Literature DB >> 21583969

2-(Chloro-meth-yl)benzimidazolium chloride.

Gang Wang1, Zhi-Rong Qu.   

Abstract

The structure of title compound, C(8)H(8)ClN(2) (+)·Cl(-), comprises discrete ions which are inter-connected by N-H⋯Cl hydrogen bonds, leading to a neutral one-dimensional network in [001]. This hydrogen bonding appears to complement π-π stacking inter-actions [centroid-centroid distances 3.768 (2) and 3.551 (2) Å] and helps to stabilize the structure further.

Entities:  

Year:  2009        PMID: 21583969      PMCID: PMC2977832          DOI: 10.1107/S1600536809015359

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of the preparation of imidazole compounds, see: Ikezaki & Nakamura (2002 ▶). For the chemistry of 2-(chloro­meth­yl)-1H-benzo[d]imidazolium chloride, see: Jian et al. (2003 ▶).

Experimental

Crystal data

C8H8ClN2 +·Cl− M = 203.06 Monoclinic, a = 7.1972 (14) Å b = 9.4507 (19) Å c = 14.046 (3) Å β = 102.51 (3)° V = 932.7 (3) Å3 Z = 4 Mo Kα radiation μ = 0.64 mm−1 T = 293 K 0.22 × 0.20 × 0.20 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.867, T max = 0.882 9462 measured reflections 2141 independent reflections 1212 reflections with I > 2σ(I) R int = 0.083 Standard reflections: ?

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.180 S = 0.84 2141 reflections 109 parameters . Δρmax = 0.29 e Å−3 Δρmin = −0.31 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL/PC (Sheldrick, 2008 ▶); software used to prepare material for publication: PRPKAPPA (Ferguson, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809015359/bx2205sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809015359/bx2205Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H8ClN2+·ClF(000) = 416
Mr = 203.06Dx = 1.446 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -p 2ybcCell parameters from 1979 reflections
a = 7.1972 (14) Åθ = 3.1–27.5°
b = 9.4507 (19) ŵ = 0.64 mm1
c = 14.046 (3) ÅT = 293 K
β = 102.51 (3)°Prism, colourless
V = 932.7 (3) Å30.22 × 0.20 × 0.20 mm
Z = 4
Rigaku SCXmini diffractometer2141 independent reflections
Radiation source: fine-focus sealed tube1212 reflections with I > 2σ(I)
graphiteRint = 0.083
CCD_Profile_fitting scansθmax = 27.5°, θmin = 3.6°
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)h = −9→9
Tmin = 0.867, Tmax = 0.882k = −12→12
9462 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.180w = 1/[σ2(Fo2) + (0.1077P)2 + 0.4199P] where P = (Fo2 + 2Fc2)/3
S = 0.84(Δ/σ)max < 0.001
2141 reflectionsΔρmax = 0.29 e Å3
109 parametersΔρmin = −0.31 e Å3
0 restraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.34571 (17)0.59201 (10)1.15934 (7)0.0608 (4)
Cl20.11234 (16)0.56643 (10)0.83757 (8)0.0654 (4)
N20.2890 (4)0.8248 (3)1.00495 (19)0.0449 (7)
H2A0.30320.76111.04960.054*
N10.2626 (4)0.9234 (3)0.86427 (19)0.0446 (7)
H1A0.25750.93380.80290.053*
C60.2574 (4)0.9674 (4)1.0180 (2)0.0385 (8)
C10.2393 (5)1.0306 (3)0.9280 (2)0.0388 (8)
C70.2936 (5)0.8027 (4)0.9125 (3)0.0438 (8)
C50.2467 (5)1.0453 (4)1.1012 (3)0.0528 (10)
H5A0.25961.00281.16200.063*
C20.2079 (5)1.1754 (4)0.9153 (3)0.0528 (10)
H2B0.19571.21830.85460.063*
C40.2163 (6)1.1877 (4)1.0883 (3)0.0588 (11)
H4A0.20901.24351.14190.071*
C30.1961 (6)1.2515 (4)0.9973 (3)0.0615 (11)
H3A0.17381.34840.99170.074*
C80.3276 (6)0.6648 (4)0.8695 (3)0.0628 (11)
H8A0.42050.61140.91620.075*
H8B0.37870.68010.81190.075*
U11U22U33U12U13U23
Cl10.0894 (8)0.0515 (6)0.0475 (6)0.0166 (5)0.0280 (5)0.0084 (4)
Cl20.0670 (7)0.0524 (6)0.0753 (7)−0.0038 (5)0.0119 (5)−0.0149 (5)
N20.0488 (18)0.0411 (16)0.0452 (17)0.0062 (14)0.0111 (14)0.0093 (12)
N10.0527 (19)0.0459 (17)0.0377 (15)0.0017 (14)0.0154 (14)0.0019 (13)
C60.0319 (18)0.0439 (18)0.0407 (18)0.0021 (15)0.0104 (14)0.0029 (14)
C10.0361 (18)0.0403 (17)0.0409 (18)−0.0009 (15)0.0105 (15)−0.0002 (15)
C70.0383 (19)0.0436 (19)0.052 (2)0.0025 (16)0.0157 (16)−0.0010 (16)
C50.050 (2)0.071 (3)0.0383 (19)0.002 (2)0.0099 (16)−0.0059 (17)
C20.058 (2)0.046 (2)0.054 (2)0.0001 (18)0.0104 (19)0.0072 (17)
C40.054 (2)0.064 (3)0.057 (2)0.005 (2)0.011 (2)−0.022 (2)
C30.061 (3)0.042 (2)0.082 (3)0.005 (2)0.015 (2)−0.013 (2)
C80.053 (2)0.051 (2)0.087 (3)0.002 (2)0.021 (2)−0.016 (2)
C1—C61.381 (4)C5—H5A0.9300
C1—C21.389 (4)C6—N21.385 (4)
C1—N11.391 (3)C7—N21.320 (3)
C2—C31.372 (4)C7—N11.322 (3)
C2—H2B0.9300C7—C81.477 (4)
C3—C41.395 (4)C8—Cl21.781 (3)
C3—H3A0.9300C8—H8A0.9700
C4—C51.367 (4)C8—H8B0.9700
C4—H4A0.9300N1—H1A0.8600
C5—C61.392 (4)N2—H2A0.8600
C6—C1—C2121.8 (3)N2—C6—C5132.0 (3)
C6—C1—N1106.0 (2)N2—C7—N1109.3 (2)
C2—C1—N1132.2 (3)N2—C7—C8125.5 (3)
C3—C2—C1116.4 (3)N1—C7—C8125.2 (3)
C3—C2—H2B121.8C7—C8—Cl2110.6 (2)
C1—C2—H2B121.8C7—C8—H8A109.5
C2—C3—C4121.8 (3)Cl2—C8—H8A109.5
C2—C3—H3A119.1C7—C8—H8B109.5
C4—C3—H3A119.1Cl2—C8—H8B109.5
C5—C4—C3121.9 (3)H8A—C8—H8B108.1
C5—C4—H4A119.1C7—N1—C1109.1 (2)
C3—C4—H4A119.1C7—N1—H1A125.5
C4—C5—C6116.5 (3)C1—N1—H1A125.5
C4—C5—H5A121.7C7—N2—C6109.2 (2)
C6—C5—H5A121.7C7—N2—H2A125.4
C1—C6—N2106.4 (2)C6—N2—H2A125.4
C1—C6—C5121.5 (3)
C6—C1—C2—C30.1 (5)N2—C7—C8—Cl284.1 (4)
N1—C1—C2—C3−178.5 (3)N1—C7—C8—Cl2−95.6 (3)
C1—C2—C3—C40.6 (5)N2—C7—N1—C11.1 (3)
C2—C3—C4—C5−0.7 (5)C8—C7—N1—C1−179.1 (3)
C3—C4—C5—C60.1 (5)C6—C1—N1—C7−0.3 (3)
C2—C1—C6—N2−179.4 (3)C2—C1—N1—C7178.4 (3)
N1—C1—C6—N2−0.5 (3)N1—C7—N2—C6−1.5 (3)
C2—C1—C6—C5−0.7 (4)C8—C7—N2—C6178.8 (3)
N1—C1—C6—C5178.2 (3)C1—C6—N2—C71.2 (3)
C4—C5—C6—C10.6 (4)C5—C6—N2—C7−177.3 (3)
C4—C5—C6—N2178.9 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···Cl1i0.862.253.066 (2)158
N2—H2A···Cl10.862.203.055 (2)178
Group 1Group 2α /°DCC /Åτ /°
Cg1Cg2i1.433.768 (2)21.88
Cg1Cg2ii1.433.551 (2)12.47
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯Cl1i0.862.253.066 (2)158
N2—H2A⋯Cl10.862.203.055 (2)178

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Models for cytochromes c': spin states of mono(imidazole)-ligated (meso-tetramesitylporphyrinato)iron(III) complexes as studied by UV-Vis, 13C NMR, 1H NMR, and EPR spectroscopy.

Authors:  Akira Ikezaki; Mikio Nakamura
Journal:  Inorg Chem       Date:  2002-12-02       Impact factor: 5.165

  2 in total

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