Literature DB >> 21583961

Dimethyl 1-(2-cyano-benz-yl)-1H-pyrazole-3,5-dicarboxyl-ate.

Ji-Yuan Yao1, Jie Xiao, Hong Zhao.   

Abstract

In the mol-ecule of the title compound, C(15)H(13)N(3)O(4), the dihedral angle between the pyrazole and benzene rings is 79.89 (6)°. An intra-molecular C-H⋯O hydrogen bond is present. The crystal structure is stabilized by π-π stacking inter-actions between centrosymmetrically related pyrazole rings with a centroid-centroid distance of 3.500 (3) Å.

Entities:  

Year:  2009        PMID: 21583961      PMCID: PMC2977824          DOI: 10.1107/S1600536809015153

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of pyrazoles as ligands, see: Dvorak et al. (2005 ▶). For the use of nitrile derivatives in the synthesis of heterocyclic compounds, see: Radl et al. (2000 ▶). For a related structure, see: Fu & Zhao (2007 ▶).

Experimental

Crystal data

C15H13N3O4 M = 299.28 Monoclinic, a = 7.2416 (19) Å b = 10.977 (3) Å c = 18.405 (4) Å β = 100.670 (11)° V = 1437.7 (6) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 291 K 0.35 × 0.30 × 0.25 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.968, T max = 0.980 14431 measured reflections 3287 independent reflections 2452 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.130 S = 1.09 3287 reflections 201 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.19 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL/PC (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL/PC. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809015153/rz2312sup1.cif Structure factors: contains datablocks I, I. DOI: 10.1107/S1600536809015153/rz2312Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H13N3O4F(000) = 624
Mr = 299.28Dx = 1.383 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3210 reflections
a = 7.2416 (19) Åθ = 2.9–27.5°
b = 10.977 (3) ŵ = 0.10 mm1
c = 18.405 (4) ÅT = 291 K
β = 100.670 (11)°Prism, colourless
V = 1437.7 (6) Å30.35 × 0.30 × 0.25 mm
Z = 4
Rigaku SCXmini diffractometer3287 independent reflections
Radiation source: fine-focus sealed tube2452 reflections with I > 2σ(I)
graphiteRint = 0.040
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 2.9°
ω scansh = −9→9
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −14→14
Tmin = 0.968, Tmax = 0.980l = −23→23
14431 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.130H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0618P)2 + 0.1406P] where P = (Fo2 + 2Fc2)/3
3287 reflections(Δ/σ)max < 0.001
201 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.7452 (2)−0.11741 (14)−0.00030 (8)0.0384 (4)
C20.7207 (2)0.00398 (14)−0.02209 (9)0.0384 (4)
H20.65930.0337−0.06750.046*
C30.8066 (2)0.07034 (14)0.03796 (9)0.0369 (4)
C40.6825 (2)−0.22943 (15)−0.04182 (9)0.0430 (4)
C50.5284 (3)−0.3033 (2)−0.15741 (12)0.0698 (6)
H5A0.6333−0.3544−0.16180.105*
H5B0.4715−0.2736−0.20540.105*
H5C0.4378−0.3494−0.13680.105*
C60.8293 (2)0.20236 (15)0.04805 (9)0.0419 (4)
C70.7579 (3)0.39182 (17)−0.01060 (12)0.0691 (6)
H7A0.69400.42590.02590.104*
H7B0.70380.4234−0.05840.104*
H7C0.88860.41320.00090.104*
C80.9833 (2)0.00848 (16)0.16631 (9)0.0438 (4)
H8A1.06960.07580.16550.053*
H8B1.0572−0.06350.18260.053*
C90.8571 (2)0.03652 (14)0.22102 (9)0.0409 (4)
C100.9142 (2)0.11795 (15)0.27911 (9)0.0455 (4)
C110.8042 (3)0.13819 (17)0.33260 (10)0.0572 (5)
H110.84470.19190.37140.069*
C120.6365 (3)0.0788 (2)0.32785 (11)0.0639 (5)
H120.56230.09240.36330.077*
C130.5775 (3)−0.0008 (2)0.27081 (12)0.0636 (5)
H130.4631−0.04080.26770.076*
C140.6869 (3)−0.02201 (17)0.21785 (10)0.0519 (4)
H140.6452−0.07640.17960.062*
C151.0869 (3)0.18543 (18)0.28545 (10)0.0560 (5)
N10.87843 (18)−0.01204 (12)0.09157 (7)0.0385 (3)
N20.84141 (19)−0.12686 (12)0.06921 (7)0.0414 (3)
N31.2207 (3)0.24250 (19)0.29236 (11)0.0811 (6)
O10.7088 (2)−0.33067 (12)−0.01849 (7)0.0649 (4)
O20.5924 (2)−0.20179 (11)−0.10967 (7)0.0574 (4)
O30.9169 (2)0.25110 (12)0.10214 (7)0.0645 (4)
O40.7390 (2)0.26063 (10)−0.01091 (7)0.0568 (4)
U11U22U33U12U13U23
C10.0436 (9)0.0354 (8)0.0381 (9)0.0005 (7)0.0124 (7)0.0002 (6)
C20.0426 (9)0.0358 (8)0.0364 (8)0.0020 (6)0.0068 (7)−0.0002 (6)
C30.0405 (8)0.0315 (8)0.0404 (8)0.0021 (6)0.0121 (7)0.0012 (6)
C40.0520 (10)0.0354 (9)0.0437 (9)−0.0026 (7)0.0140 (8)−0.0022 (7)
C50.0987 (17)0.0559 (12)0.0525 (12)−0.0175 (11)0.0084 (11)−0.0181 (9)
C60.0468 (9)0.0367 (9)0.0433 (9)0.0000 (7)0.0112 (7)−0.0030 (7)
C70.1012 (17)0.0315 (10)0.0721 (14)−0.0033 (10)0.0092 (12)0.0056 (9)
C80.0463 (9)0.0459 (10)0.0377 (9)0.0035 (7)0.0041 (7)−0.0006 (7)
C90.0487 (9)0.0368 (8)0.0366 (8)0.0070 (7)0.0058 (7)0.0040 (6)
C100.0579 (10)0.0394 (9)0.0377 (9)0.0082 (7)0.0050 (8)0.0025 (7)
C110.0759 (13)0.0531 (12)0.0438 (10)0.0114 (9)0.0148 (10)−0.0049 (8)
C120.0738 (14)0.0707 (14)0.0537 (11)0.0150 (11)0.0288 (10)0.0053 (10)
C130.0589 (12)0.0713 (14)0.0646 (13)−0.0013 (10)0.0220 (10)0.0057 (10)
C140.0577 (11)0.0501 (11)0.0484 (10)−0.0008 (8)0.0114 (9)−0.0012 (8)
C150.0632 (12)0.0537 (12)0.0484 (10)0.0007 (9)0.0030 (9)−0.0093 (8)
N10.0453 (8)0.0350 (7)0.0356 (7)0.0015 (5)0.0089 (6)−0.0003 (5)
N20.0523 (8)0.0324 (7)0.0407 (7)0.0006 (6)0.0122 (6)0.0003 (5)
N30.0735 (13)0.0847 (14)0.0806 (14)−0.0193 (11)0.0024 (10)−0.0156 (11)
O10.0995 (11)0.0333 (7)0.0601 (8)−0.0036 (7)0.0103 (8)0.0019 (6)
O20.0811 (9)0.0403 (7)0.0458 (7)−0.0055 (6)−0.0011 (6)−0.0065 (5)
O30.0864 (10)0.0431 (7)0.0573 (8)−0.0058 (7)−0.0037 (7)−0.0088 (6)
O40.0792 (9)0.0307 (6)0.0555 (8)0.0007 (6)−0.0005 (7)0.0026 (5)
C1—N21.343 (2)C7—H7C0.9600
C1—C21.393 (2)C8—N11.460 (2)
C1—C41.474 (2)C8—C91.512 (2)
C2—C31.373 (2)C8—H8A0.9700
C2—H20.9300C8—H8B0.9700
C3—N11.368 (2)C9—C141.381 (3)
C3—C61.466 (2)C9—C101.396 (2)
C4—O11.194 (2)C10—C111.394 (3)
C4—O21.332 (2)C10—C151.440 (3)
C5—O21.441 (2)C11—C121.367 (3)
C5—H5A0.9600C11—H110.9300
C5—H5B0.9600C12—C131.372 (3)
C5—H5C0.9600C12—H120.9300
C6—O31.202 (2)C13—C141.385 (3)
C6—O41.324 (2)C13—H130.9300
C7—O41.446 (2)C14—H140.9300
C7—H7A0.9600C15—N31.141 (3)
C7—H7B0.9600N1—N21.3376 (18)
N2—C1—C2111.35 (14)C9—C8—H8A109.1
N2—C1—C4119.02 (14)N1—C8—H8B109.1
C2—C1—C4129.63 (15)C9—C8—H8B109.1
C3—C2—C1105.13 (14)H8A—C8—H8B107.8
C3—C2—H2127.4C14—C9—C10117.76 (16)
C1—C2—H2127.4C14—C9—C8121.46 (15)
N1—C3—C2106.57 (13)C10—C9—C8120.69 (16)
N1—C3—C6122.89 (14)C11—C10—C9121.04 (18)
C2—C3—C6130.53 (15)C11—C10—C15117.53 (17)
O1—C4—O2124.53 (16)C9—C10—C15121.42 (16)
O1—C4—C1125.21 (16)C12—C11—C10119.74 (18)
O2—C4—C1110.25 (14)C12—C11—H11120.1
O2—C5—H5A109.5C10—C11—H11120.1
O2—C5—H5B109.5C11—C12—C13119.98 (18)
H5A—C5—H5B109.5C11—C12—H12120.0
O2—C5—H5C109.5C13—C12—H12120.0
H5A—C5—H5C109.5C12—C13—C14120.5 (2)
H5B—C5—H5C109.5C12—C13—H13119.7
O3—C6—O4124.65 (16)C14—C13—H13119.7
O3—C6—C3125.05 (16)C9—C14—C13120.93 (18)
O4—C6—C3110.30 (14)C9—C14—H14119.5
O4—C7—H7A109.5C13—C14—H14119.5
O4—C7—H7B109.5N3—C15—C10177.0 (2)
H7A—C7—H7B109.5N2—N1—C3111.90 (13)
O4—C7—H7C109.5N2—N1—C8118.35 (13)
H7A—C7—H7C109.5C3—N1—C8129.75 (14)
H7B—C7—H7C109.5N1—N2—C1105.04 (12)
N1—C8—C9112.67 (14)C4—O2—C5116.21 (14)
N1—C8—H8A109.1C6—O4—C7116.47 (14)
D—H···AD—HH···AD···AD—H···A
C8—H8A···O30.972.412.917 (2)112
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C8—H8A⋯O30.972.412.917 (2)112
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Palladium-catalyzed coupling of pyrazole triflates with arylboronic acids.

Authors:  Curt A Dvorak; Dale A Rudolph; Sandy Ma; Nicholas I Carruthers
Journal:  J Org Chem       Date:  2005-05-13       Impact factor: 4.354

  2 in total
  1 in total

1.  Tris(ethyl-enediamine)-nickel(II) 1H-pyrazole-3,5-dicarboxyl-ate 1.67-hydrate.

Authors:  Güneş Demirtaş; Necmi Dege; Okan Zafer Yeşilel; Hakan Erer; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-14
  1 in total

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