Literature DB >> 21583949

3-Isopropyl-2-p-tol-yloxy-5,6,7,8-tetra-hydro-1-benzothieno[2,3-d]pyrimidin-4(3H)-one.

Xiao-Hua Zeng, Shou-Heng Deng, Yong-Nian Qu, Hong-Mei Wang.   

Abstract

In the title compound, C(20)H(22)N(2)O(2)S, the central thieno-pyrimidine ring system is essentially planar, with a maximum displacement of 0.023 (2) Å. The attached cyclo-hexene ring is disordered over two possible conformations, with an occupancy ratio of 0.776 (12):0.224 (12). Neither inter-molecular hydrogen-bonding inter-actions nor π-π stacking inter-actions are present in the crystal structure. The mol-ecular conformation and crystal packing are stabilized by three intra-molecular C-H⋯O hydrogen bonds and two C-H⋯π inter-actions.

Entities:  

Year:  2009        PMID: 21583949      PMCID: PMC2977812          DOI: 10.1107/S1600536809014962

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of thienopyrimidin-4(3H)-one derivatives, see: De Laszlo et al. (1992a ▶,b ▶); Taguchi et al. (1993a ▶,b ▶); Walter (1999a ▶,b ▶,c ▶,d ▶); Walter & Zeun (2004 ▶); Ding et al. (2004 ▶); Santagati et al. (2003 ▶); Abbott GmbH Co KG (2004a ▶, 2004b ▶); Waehaelae et al. (2004a ▶,b ▶); Ford et al. (2004a ▶,b ▶); Duval et al. (2005 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶). For related structures, see: Xie et al. (2008 ▶); Xu et al. (2005 ▶); Zeng et al. (2005 ▶, 2006 ▶, 2007 ▶, 2008 ▶); Wang et al. (2006 ▶, 2007 ▶, 2008 ▶); Zheng et al. (2007 ▶).

Experimental

Crystal data

C20H22N2O2S M = 354.47 Monoclinic, a = 13.2367 (7) Å b = 5.7493 (3) Å c = 13.4306 (7) Å β = 115.858 (4)° V = 919.76 (8) Å3 Z = 2 Mo Kα radiation μ = 0.19 mm−1 T = 298 K 0.20 × 0.10 × 0.10 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.963, T max = 0.981 6373 measured reflections 3920 independent reflections 3370 reflections with I > 2σ(I) R int = 0.079

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.141 S = 1.01 3920 reflections 248 parameters 16 restraints H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.32 e Å−3 Absolute structure: Flack (1983 ▶), 1702 Freidel pairs Flack parameter: 0.16 (10) Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809014962/at2765sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809014962/at2765Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H22N2O2SF(000) = 376
Mr = 354.47Dx = 1.280 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 2048 reflections
a = 13.2367 (7) Åθ = 2.9–24.5°
b = 5.7493 (3) ŵ = 0.19 mm1
c = 13.4306 (7) ÅT = 298 K
β = 115.858 (4)°Block, colourless
V = 919.76 (8) Å30.20 × 0.10 × 0.10 mm
Z = 2
Bruker SMART CCD area-detector diffractometer3920 independent reflections
Radiation source: fine-focus sealed tube3370 reflections with I > 2σ(I)
graphiteRint = 0.079
φ and ω scansθmax = 27.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −16→16
Tmin = 0.963, Tmax = 0.981k = −7→7
6373 measured reflectionsl = −17→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.057H-atom parameters constrained
wR(F2) = 0.141w = 1/[σ2(Fo2) + (0.0798P)2] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
3920 reflectionsΔρmax = 0.20 e Å3
248 parametersΔρmin = −0.32 e Å3
16 restraintsAbsolute structure: Flack (1983), 1702 Freidel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.16 (10)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.20878 (19)0.6656 (5)0.88050 (19)0.0448 (6)
C20.0948 (2)0.6877 (6)0.8794 (2)0.0563 (7)
H2A0.04460.77000.81320.068*0.776 (12)
H2B0.06390.53390.87760.068*0.776 (12)
H2C0.08170.55930.91910.068*0.224 (12)
H2D0.03700.68490.80370.068*0.224 (12)
C30.1018 (4)0.8162 (11)0.9796 (5)0.0662 (16)0.776 (12)
H3A0.13480.71571.04390.079*0.776 (12)
H3B0.02680.85760.96930.079*0.776 (12)
C40.1717 (4)1.0336 (10)0.9996 (6)0.0690 (17)0.776 (12)
H4A0.17031.11751.06160.083*0.776 (12)
H4B0.13831.13290.93490.083*0.776 (12)
C3'0.0904 (12)0.916 (2)0.9334 (14)0.061 (5)0.224 (12)
H3'10.08291.04050.88170.073*0.224 (12)
H3'20.02300.91690.94480.073*0.224 (12)
C4'0.1882 (9)0.974 (5)1.0420 (11)0.068 (6)0.224 (12)
H4'10.19650.85561.09640.081*0.224 (12)
H4'20.17581.12241.06920.081*0.224 (12)
C50.2932 (2)0.9853 (6)1.0236 (3)0.0615 (8)
H5A0.32831.12651.01440.074*0.776 (12)
H5B0.33460.93221.09930.074*0.776 (12)
H5C0.29961.13760.99580.074*0.224 (12)
H5D0.35780.96361.09430.074*0.224 (12)
C60.2953 (2)0.8022 (5)0.9451 (2)0.0489 (6)
C70.3471 (2)0.5369 (5)0.8298 (2)0.0457 (6)
C80.23832 (18)0.5102 (5)0.81357 (19)0.0419 (5)
C90.1665 (2)0.3547 (5)0.7278 (2)0.0440 (5)
C100.33155 (19)0.2882 (5)0.6970 (2)0.0472 (6)
C110.1476 (2)0.1089 (5)0.5680 (2)0.0476 (6)
H110.07270.11040.56580.057*
C120.1818 (3)−0.1432 (6)0.5773 (3)0.0763 (10)
H12A0.2536−0.15560.57600.114*
H12B0.1269−0.22870.51630.114*
H12C0.1867−0.20600.64550.114*
C130.1348 (3)0.2214 (6)0.4619 (2)0.0640 (8)
H13A0.10850.37810.45870.096*
H13B0.08170.13490.40010.096*
H13C0.20610.22290.45910.096*
C140.4833 (2)0.1798 (5)0.6585 (2)0.0515 (7)
C150.5521 (3)0.0051 (7)0.7178 (3)0.0704 (9)
H150.5252−0.11410.74660.084*
C160.6628 (3)0.0076 (7)0.7348 (3)0.0743 (9)
H160.7098−0.11370.77410.089*
C170.7055 (2)0.1829 (6)0.6956 (2)0.0592 (8)
C180.6321 (3)0.3536 (7)0.6344 (3)0.0721 (9)
H180.65830.47270.60500.086*
C190.5207 (3)0.3543 (6)0.6149 (3)0.0710 (9)
H190.47240.47150.57300.085*
C200.8275 (2)0.1872 (10)0.7183 (3)0.0936 (15)
H20A0.86390.31780.76460.140*
H20B0.83320.20060.64960.140*
H20C0.86320.04600.75490.140*
N10.22102 (15)0.2496 (4)0.66777 (15)0.0435 (4)
N20.39874 (17)0.4226 (4)0.77485 (19)0.0524 (6)
O20.36853 (15)0.1676 (4)0.63340 (17)0.0689 (7)
O10.06852 (14)0.3137 (4)0.70296 (16)0.0607 (6)
S10.41623 (5)0.74703 (15)0.92707 (6)0.0585 (2)
U11U22U33U12U13U23
C10.0409 (13)0.0542 (15)0.0392 (12)0.0072 (10)0.0172 (10)0.0072 (11)
C20.0453 (14)0.068 (2)0.0600 (16)0.0029 (12)0.0267 (12)−0.0012 (14)
C30.062 (3)0.086 (4)0.062 (3)−0.003 (2)0.038 (2)−0.010 (3)
C40.075 (3)0.074 (4)0.070 (4)0.005 (2)0.042 (3)−0.014 (3)
C3'0.053 (7)0.072 (8)0.060 (8)0.002 (6)0.026 (6)0.000 (6)
C4'0.075 (9)0.081 (10)0.056 (9)0.012 (6)0.036 (7)0.012 (7)
C50.0554 (16)0.071 (2)0.0553 (16)0.0041 (14)0.0213 (13)−0.0128 (15)
C60.0409 (12)0.0616 (17)0.0410 (12)0.0051 (11)0.0149 (10)−0.0014 (12)
C70.0371 (13)0.0556 (15)0.0383 (12)0.0036 (11)0.0107 (10)−0.0022 (11)
C80.0347 (11)0.0508 (13)0.0373 (12)0.0014 (10)0.0130 (10)0.0026 (10)
C90.0369 (12)0.0502 (14)0.0449 (13)0.0016 (10)0.0179 (10)0.0058 (11)
C100.0360 (11)0.0563 (16)0.0490 (13)0.0013 (11)0.0182 (10)−0.0032 (12)
C110.0381 (13)0.0495 (15)0.0485 (14)−0.0052 (11)0.0127 (11)−0.0059 (12)
C120.095 (3)0.0463 (17)0.072 (2)−0.0096 (16)0.0220 (19)0.0016 (16)
C130.0728 (18)0.0565 (18)0.0483 (15)0.0039 (15)0.0130 (13)−0.0016 (14)
C140.0381 (13)0.0631 (18)0.0561 (15)−0.0044 (11)0.0232 (12)−0.0184 (13)
C150.0602 (18)0.075 (2)0.082 (2)−0.0034 (17)0.0366 (17)0.0130 (19)
C160.0570 (18)0.083 (2)0.077 (2)0.0165 (17)0.0243 (16)0.0157 (19)
C170.0473 (14)0.085 (2)0.0514 (15)−0.0026 (14)0.0276 (12)−0.0128 (15)
C180.0622 (19)0.085 (2)0.076 (2)−0.0121 (18)0.0372 (17)0.0070 (18)
C190.0608 (18)0.067 (2)0.083 (2)0.0070 (16)0.0292 (17)0.0075 (18)
C200.0496 (17)0.166 (5)0.073 (2)0.002 (2)0.0332 (16)−0.020 (3)
N10.0338 (9)0.0498 (11)0.0439 (10)−0.0019 (10)0.0143 (8)−0.0033 (10)
N20.0319 (10)0.0662 (15)0.0566 (13)−0.0020 (10)0.0169 (9)−0.0152 (11)
O20.0398 (10)0.0937 (17)0.0744 (13)−0.0097 (10)0.0261 (9)−0.0374 (12)
O10.0361 (9)0.0808 (15)0.0670 (11)−0.0103 (9)0.0242 (8)−0.0142 (11)
S10.0359 (3)0.0722 (5)0.0603 (4)−0.0040 (3)0.0144 (3)−0.0216 (4)
C1—C61.347 (4)C9—O11.213 (3)
C1—C81.437 (4)C9—N11.429 (3)
C1—C21.508 (3)C10—N21.292 (3)
C2—C31.502 (5)C10—O21.348 (3)
C2—C3'1.515 (10)C10—N11.358 (3)
C2—H2A0.9700C11—N11.503 (3)
C2—H2B0.9700C11—C131.506 (4)
C2—H2C0.9700C11—C121.508 (5)
C2—H2D0.9700C11—H110.9800
C3—C41.508 (7)C12—H12A0.9600
C3—H3A0.9700C12—H12B0.9600
C3—H3B0.9700C12—H12C0.9600
C4—C51.521 (5)C13—H13A0.9600
C4—H4A0.9700C13—H13B0.9600
C4—H4B0.9700C13—H13C0.9600
C3'—C4'1.505 (10)C14—C151.356 (5)
C3'—H3'10.9700C14—C191.359 (4)
C3'—H3'20.9700C14—O21.407 (3)
C4'—C51.515 (9)C15—C161.382 (4)
C4'—H4'10.9700C15—H150.9300
C4'—H4'20.9700C16—C171.368 (5)
C5—C61.499 (4)C16—H160.9300
C5—H5A0.9700C17—C181.373 (5)
C5—H5B0.9700C17—C201.508 (4)
C5—H5C0.9700C18—C191.381 (4)
C5—H5D0.9700C18—H180.9300
C6—S11.749 (3)C19—H190.9300
C7—C81.368 (3)C20—H20A0.9600
C7—N21.372 (3)C20—H20B0.9600
C7—S11.721 (3)C20—H20C0.9600
C8—C91.440 (4)
C6—C1—C8112.2 (2)H5A—C5—H5D88.0
C6—C1—C2121.6 (2)H5B—C5—H5D23.0
C8—C1—C2126.2 (2)H5C—C5—H5D107.8
C3—C2—C1111.2 (3)C1—C6—C5126.2 (2)
C3—C2—C3'31.2 (6)C1—C6—S1112.19 (19)
C1—C2—C3'108.4 (7)C5—C6—S1121.6 (2)
C3—C2—H2A109.4C8—C7—N2126.7 (2)
C1—C2—H2A109.4C8—C7—S1111.93 (19)
C3'—C2—H2A82.1N2—C7—S1121.34 (18)
C3—C2—H2B109.4C7—C8—C1112.7 (2)
C1—C2—H2B109.4C7—C8—C9118.6 (2)
C3'—C2—H2B134.4C1—C8—C9128.4 (2)
H2A—C2—H2B108.0O1—C9—N1120.3 (2)
C3—C2—H2C80.7O1—C9—C8126.4 (2)
C1—C2—H2C110.4N1—C9—C8113.2 (2)
C3'—C2—H2C110.1N2—C10—O2120.6 (2)
H2A—C2—H2C131.4N2—C10—N1127.4 (2)
H2B—C2—H2C31.3O2—C10—N1112.1 (2)
C3—C2—H2D131.3N1—C11—C13112.0 (2)
C1—C2—H2D109.7N1—C11—C12112.9 (2)
C3'—C2—H2D109.9C13—C11—C12113.4 (3)
H2A—C2—H2D30.2N1—C11—H11105.9
H2B—C2—H2D80.0C13—C11—H11105.9
H2C—C2—H2D108.4C12—C11—H11105.9
C2—C3—C4111.1 (5)C11—C12—H12A109.5
C2—C3—H3A109.4C11—C12—H12B109.5
C4—C3—H3A109.4H12A—C12—H12B109.5
C2—C3—H3B109.4C11—C12—H12C109.5
C4—C3—H3B109.4H12A—C12—H12C109.5
H3A—C3—H3B108.0H12B—C12—H12C109.5
C3—C4—C5113.3 (4)C11—C13—H13A109.5
C3—C4—H4A108.9C11—C13—H13B109.5
C5—C4—H4A108.9H13A—C13—H13B109.5
C3—C4—H4B108.9C11—C13—H13C109.5
C5—C4—H4B108.9H13A—C13—H13C109.5
H4A—C4—H4B107.7H13B—C13—H13C109.5
C4'—C3'—C2117.3 (15)C15—C14—C19121.5 (3)
C4'—C3'—H3'1108.0C15—C14—O2118.8 (3)
C2—C3'—H3'1108.0C19—C14—O2119.4 (3)
C4'—C3'—H3'2108.0C14—C15—C16118.8 (3)
C2—C3'—H3'2108.0C14—C15—H15120.6
H3'1—C3'—H3'2107.2C16—C15—H15120.6
C3'—C4'—C5108.3 (10)C17—C16—C15122.0 (3)
C3'—C4'—H4'1110.0C17—C16—H16119.0
C5—C4'—H4'1110.0C15—C16—H16119.0
C3'—C4'—H4'2110.0C16—C17—C18117.0 (3)
C5—C4'—H4'2110.0C16—C17—C20121.3 (3)
H4'1—C4'—H4'2108.4C18—C17—C20121.6 (3)
C6—C5—C4'112.6 (9)C17—C18—C19122.2 (3)
C6—C5—C4108.8 (3)C17—C18—H18118.9
C4'—C5—C423.5 (6)C19—C18—H18118.9
C6—C5—H5A109.9C14—C19—C18118.4 (3)
C4'—C5—H5A125.5C14—C19—H19120.8
C4—C5—H5A109.9C18—C19—H19120.8
C6—C5—H5B109.9C17—C20—H20A109.5
C4'—C5—H5B87.4C17—C20—H20B109.5
C4—C5—H5B109.9H20A—C20—H20B109.5
H5A—C5—H5B108.3C17—C20—H20C109.5
C6—C5—H5C109.4H20A—C20—H20C109.5
C4'—C5—H5C110.0H20B—C20—H20C109.5
C4—C5—H5C90.9C10—N1—C9120.8 (2)
H5A—C5—H5C21.3C10—N1—C11122.9 (2)
H5B—C5—H5C125.7C9—N1—C11116.21 (18)
C6—C5—H5D108.6C10—N2—C7113.1 (2)
C4'—C5—H5D108.3C10—O2—C14118.4 (2)
C4—C5—H5D129.0C7—S1—C690.97 (12)
C6—C1—C2—C3−17.9 (5)C19—C14—C15—C160.6 (5)
C8—C1—C2—C3164.4 (4)O2—C14—C15—C16174.8 (3)
C6—C1—C2—C3'15.2 (8)C14—C15—C16—C171.4 (5)
C8—C1—C2—C3'−162.5 (8)C15—C16—C17—C18−2.5 (5)
C1—C2—C3—C446.7 (6)C15—C16—C17—C20177.8 (3)
C3'—C2—C3—C4−44.0 (11)C16—C17—C18—C191.7 (5)
C2—C3—C4—C5−62.5 (8)C20—C17—C18—C19−178.6 (3)
C3—C2—C3'—C4'53.3 (13)C15—C14—C19—C18−1.4 (5)
C1—C2—C3'—C4'−47.5 (19)O2—C14—C19—C18−175.5 (3)
C2—C3'—C4'—C561 (3)C17—C18—C19—C140.2 (5)
C3'—C4'—C5—C6−39 (2)N2—C10—N1—C9−2.7 (4)
C3'—C4'—C5—C446.5 (12)O2—C10—N1—C9177.7 (2)
C3—C4—C5—C643.0 (7)N2—C10—N1—C11173.4 (3)
C3—C4—C5—C4'−61 (2)O2—C10—N1—C11−6.3 (4)
C8—C1—C6—C5179.2 (3)O1—C9—N1—C10−177.9 (3)
C2—C1—C6—C51.2 (4)C8—C9—N1—C103.8 (3)
C8—C1—C6—S10.0 (3)O1—C9—N1—C115.8 (4)
C2—C1—C6—S1−178.0 (2)C8—C9—N1—C11−172.6 (2)
C4'—C5—C6—C111.4 (9)C13—C11—N1—C10−64.3 (3)
C4—C5—C6—C1−13.4 (5)C12—C11—N1—C1065.2 (3)
C4'—C5—C6—S1−169.5 (9)C13—C11—N1—C9112.0 (3)
C4—C5—C6—S1165.8 (3)C12—C11—N1—C9−118.6 (3)
N2—C7—C8—C1−176.8 (3)O2—C10—N2—C7178.4 (3)
S1—C7—C8—C10.7 (3)N1—C10—N2—C7−1.2 (4)
N2—C7—C8—C9−2.7 (4)C8—C7—N2—C104.0 (4)
S1—C7—C8—C9174.81 (19)S1—C7—N2—C10−173.3 (2)
C6—C1—C8—C7−0.4 (3)N2—C10—O2—C144.1 (4)
C2—C1—C8—C7177.4 (2)N1—C10—O2—C14−176.3 (2)
C6—C1—C8—C9−173.8 (2)C15—C14—O2—C1098.6 (3)
C2—C1—C8—C94.1 (4)C19—C14—O2—C10−87.0 (3)
C7—C8—C9—O1−179.5 (3)C8—C7—S1—C6−0.6 (2)
C1—C8—C9—O1−6.5 (4)N2—C7—S1—C6177.0 (2)
C7—C8—C9—N1−1.3 (3)C1—C6—S1—C70.4 (2)
C1—C8—C9—N1171.7 (2)C5—C6—S1—C7−178.9 (2)
D—H···AD—HH···AD···AD—H···A
C13—H13C···O20.962.412.959 (4)116
C12—H12A···O20.962.312.871 (4)117
C11—H11···O10.982.202.725 (3)112
C12—H12C···Cg1i0.962.943.838 (4)156
C12—H12C···Cg2i0.962.723.413 (4)130
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C13—H13C⋯O20.962.412.959 (4)116
C12—H12A⋯O20.962.312.871 (4)117
C11—H11⋯O10.982.202.725 (3)112
C12—H12CCg1i0.962.943.838 (4)156
C12—H12CCg2i0.962.723.413 (4)130

Symmetry code: (i) . Cg1 and Cg2 are the centroids of the thio­phene (S1/C1/C6–C8) and pyrimidine (N1/N2/C7–C10) rings, respectively.

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1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
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Authors:  Hai Xie; Shuang-Ming Meng; Yue-Qin Fan; Yong Guo
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Authors:  Guo-Ping Zeng; Qing Li; Yang-Gen Hu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-30

7.  Application of bis(iminophosphorane) in heterocyclic synthesis: new entries to symmetrically or unsymmetrically substituted thieno[2,3-d:5,4-d']dipyrimidine-4,5(3H,6H)-diones.

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Journal:  J Org Chem       Date:  2004-11-26       Impact factor: 4.354

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