Literature DB >> 21583929

1,4a,7-Trimethyl-7-vinyl-1,2,3,4,4a,4b,5,6,7,9,10,10a-dodeca-hydro-phenanthrene-1-carboxylic acid.

Yu-Xiang Chen1, Zhen-Dong Zhao, Yan Gu, Yu-Min Wang.   

Abstract

The title compound, pimaric acid, C(20)H(30)O(2), was isolated from a mixture of resin acids. There are three rings in the structure. The two cyclo-hexane rings have classical chair conformations with trans-fused ring junctions. The cyclo-hexene ring appears as a semi-chair.

Entities:  

Year:  2009        PMID: 21583929      PMCID: PMC2977793          DOI: 10.1107/S1600536809013233

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For physical and spectral data relating to pimaric acid, see: Green et al. (1958 ▶); Harris & Sanderson (1948 ▶). For the biological activity of pimaric acid, see: Imaizumi et al. (2002 ▶); Rubio et al. (2005 ▶).

Experimental

Crystal data

C20H30O2 M = 302.44 Orthorhombic, a = 20.818 (4) Å b = 10.990 (2) Å c = 7.7650 (16) Å V = 1776.6 (6) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 293 K 0.30 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.979, T max = 0.993 1862 measured reflections 1862 independent reflections 1231 reflections with I > 2σ(I) 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.065 wR(F 2) = 0.188 S = 1.00 1862 reflections 193 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.17 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo,1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809013233/at2757sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809013233/at2757Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H30O2Dx = 1.131 Mg m3
Mr = 302.44Melting point: 490K K
Orthorhombic, P21212Mo Kα radiation, λ = 0.71073 Å
a = 20.818 (4) ÅCell parameters from 25 reflections
b = 10.990 (2) Åθ = 9–12°
c = 7.7650 (16) ŵ = 0.07 mm1
V = 1776.6 (6) Å3T = 293 K
Z = 4Rectangular plate, colorless
F(000) = 6640.30 × 0.20 × 0.10 mm
Enraf–Nonius CAD-4 diffractometer1231 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.0000
graphiteθmax = 25.3°, θmin = 2.0°
ω/2θ scansh = 0→25
Absorption correction: ψ scan (North et al., 1968)k = 0→13
Tmin = 0.979, Tmax = 0.993l = −9→9
1862 measured reflections3 standard reflections every 200 reflections
1862 independent reflections intensity decay: 1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.065Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.188H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.1P)2 + 0.6P] where P = (Fo2 + 2Fc2)/3
1862 reflections(Δ/σ)max < 0.001
193 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.17 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.99697 (17)0.6536 (3)0.9540 (7)0.1009 (15)
O20.91875 (17)0.5243 (3)0.9640 (8)0.1170 (19)
H2B0.94930.47720.96030.176*
C10.5623 (5)0.9204 (9)0.5670 (15)0.149 (4)
H1A0.54210.90850.67250.179*
H1B0.55890.99500.51130.179*
C20.5940 (4)0.8361 (8)0.5000 (12)0.119 (3)
H2A0.61250.85580.39470.143*
C30.5645 (3)0.6180 (8)0.4461 (11)0.124 (3)
H3A0.57250.63400.32640.186*
H3B0.52000.63210.47130.186*
H3C0.57520.53500.47150.186*
C40.6077 (3)0.7061 (6)0.5606 (8)0.0801 (17)
C50.6758 (2)0.6766 (5)0.5262 (7)0.0711 (14)
H5A0.68740.66470.41180.085*
C60.7215 (2)0.6657 (4)0.6420 (6)0.0521 (11)
C70.7116 (2)0.6929 (4)0.8315 (6)0.0498 (11)
H7A0.71390.61440.89110.060*
C80.6445 (2)0.7431 (5)0.8672 (7)0.0680 (14)
H8A0.63390.73010.98740.082*
H8B0.64420.83000.84580.082*
C90.5940 (2)0.6822 (6)0.7544 (8)0.0787 (16)
H9A0.55180.71360.78370.094*
H9B0.59400.59520.77600.094*
C100.7870 (2)0.6163 (5)0.5973 (6)0.0640 (13)
H10A0.79200.61790.47310.077*
H10B0.78920.53200.63380.077*
C110.8424 (2)0.6850 (5)0.6776 (6)0.0577 (12)
H11A0.84650.76450.62450.069*
H11B0.88220.64090.65920.069*
C120.82995 (19)0.6994 (4)0.8726 (5)0.0445 (10)
H12A0.82030.61690.91280.053*
C130.7675 (2)0.7720 (4)0.9057 (5)0.0484 (11)
C140.8910 (2)0.7370 (4)0.9743 (6)0.0532 (12)
C150.8742 (3)0.7497 (5)1.1667 (7)0.0662 (14)
H15A0.86470.66991.21370.079*
H15B0.91100.78211.22800.079*
C160.8169 (3)0.8327 (5)1.1954 (7)0.0697 (14)
H16A0.80810.83851.31780.084*
H16B0.82700.91371.15350.084*
C170.7580 (2)0.7849 (5)1.1030 (5)0.0562 (13)
H17A0.72240.83961.12440.067*
H17B0.74690.70611.15050.067*
C180.7663 (2)0.8972 (4)0.8218 (7)0.0620 (13)
H18A0.80060.94580.86720.093*
H18B0.72600.93600.84560.093*
H18C0.77150.88870.69950.093*
C190.9237 (2)0.8539 (5)0.9099 (8)0.0758 (16)
H19A0.96080.87060.97940.114*
H19B0.89410.92060.91810.114*
H19C0.93660.84350.79220.114*
C200.9393 (2)0.6334 (4)0.9643 (7)0.062
U11U22U33U12U13U23
O10.0487 (19)0.069 (2)0.185 (4)0.0073 (17)−0.008 (3)−0.014 (3)
O20.065 (2)0.063 (2)0.223 (6)0.0112 (18)−0.001 (3)0.030 (3)
C10.150 (8)0.132 (7)0.166 (10)0.000 (6)−0.001 (8)0.027 (7)
C20.098 (5)0.129 (7)0.130 (7)0.024 (5)−0.018 (5)0.027 (6)
C30.090 (5)0.158 (7)0.124 (6)−0.019 (5)−0.015 (5)−0.021 (6)
C40.056 (3)0.104 (5)0.080 (4)0.003 (3)−0.012 (3)−0.004 (4)
C50.065 (3)0.086 (4)0.062 (3)0.001 (3)0.007 (3)−0.009 (3)
C60.056 (3)0.049 (2)0.051 (3)0.000 (2)0.004 (2)−0.009 (2)
C70.050 (3)0.052 (3)0.048 (2)0.007 (2)0.010 (2)0.007 (2)
C80.049 (3)0.088 (3)0.067 (3)0.012 (3)0.004 (3)−0.003 (3)
C90.053 (3)0.084 (4)0.100 (4)0.003 (3)0.004 (3)0.008 (4)
C100.064 (3)0.076 (3)0.052 (3)0.008 (3)0.008 (2)−0.013 (3)
C110.051 (3)0.069 (3)0.053 (3)0.010 (2)0.014 (2)−0.002 (3)
C120.049 (2)0.042 (2)0.042 (2)0.0070 (19)0.007 (2)0.005 (2)
C130.055 (2)0.050 (2)0.041 (2)0.013 (2)0.004 (2)0.001 (2)
C140.052 (2)0.045 (2)0.063 (3)0.002 (2)−0.004 (2)0.006 (2)
C150.071 (3)0.070 (3)0.057 (3)0.016 (3)−0.011 (3)0.000 (3)
C160.089 (4)0.069 (3)0.052 (3)0.017 (3)−0.009 (3)−0.008 (3)
C170.068 (3)0.059 (3)0.042 (3)0.016 (2)0.001 (2)−0.004 (2)
C180.073 (3)0.051 (3)0.062 (3)0.010 (2)−0.006 (3)0.007 (2)
C190.070 (3)0.065 (3)0.093 (4)−0.013 (3)−0.021 (3)0.011 (3)
C200.0680.0530.064−0.002−0.0070.008
O1—C201.223 (6)C10—H10A0.9700
O2—C201.273 (6)C10—H10B0.9700
O2—H2B0.8200C11—C121.544 (6)
C1—C21.251 (11)C11—H11A0.9700
C1—H1A0.9300C11—H11B0.9700
C1—H1B0.9300C12—C131.546 (6)
C2—C41.531 (10)C12—C141.552 (6)
C2—H2A0.9300C12—H12A0.9800
C3—C41.592 (9)C13—C181.523 (6)
C3—H3A0.9600C13—C171.551 (6)
C3—H3B0.9600C14—C201.520 (6)
C3—H3C0.9600C14—C191.538 (6)
C4—C51.479 (7)C14—C151.541 (7)
C4—C91.554 (8)C15—C161.517 (7)
C5—C61.315 (6)C15—H15A0.9700
C5—H5A0.9300C15—H15B0.9700
C6—C101.507 (6)C16—C171.515 (7)
C6—C71.516 (6)C16—H16A0.9700
C7—C81.527 (6)C16—H16B0.9700
C7—C131.563 (6)C17—H17A0.9700
C7—H7A0.9800C17—H17B0.9700
C8—C91.524 (7)C18—H18A0.9600
C8—H8A0.9700C18—H18B0.9600
C8—H8B0.9700C18—H18C0.9600
C9—H9A0.9700C19—H19A0.9600
C9—H9B0.9700C19—H19B0.9600
C10—C111.514 (7)C19—H19C0.9600
C20—O2—H2B109.5C12—C11—H11B109.9
C2—C1—H1A120.0H11A—C11—H11B108.3
C2—C1—H1B120.0C11—C12—C13110.9 (3)
H1A—C1—H1B120.0C11—C12—C14112.8 (4)
C1—C2—C4131.5 (10)C13—C12—C14117.8 (3)
C1—C2—H2A114.3C11—C12—H12A104.6
C4—C2—H2A114.3C13—C12—H12A104.6
C4—C3—H3A109.5C14—C12—H12A104.6
C4—C3—H3B109.5C18—C13—C12114.1 (4)
H3A—C3—H3B109.5C18—C13—C17109.7 (4)
C4—C3—H3C109.5C12—C13—C17108.6 (4)
H3A—C3—H3C109.5C18—C13—C7109.4 (4)
H3B—C3—H3C109.5C12—C13—C7106.2 (3)
C5—C4—C2109.1 (6)C17—C13—C7108.7 (4)
C5—C4—C9108.3 (5)C20—C14—C19108.4 (4)
C2—C4—C9114.9 (6)C20—C14—C15105.6 (4)
C5—C4—C3107.9 (5)C19—C14—C15109.9 (4)
C2—C4—C3106.9 (6)C20—C14—C12108.5 (4)
C9—C4—C3109.5 (6)C19—C14—C12114.8 (4)
C6—C5—C4126.2 (5)C15—C14—C12109.3 (4)
C6—C5—H5A116.9C16—C15—C14112.1 (4)
C4—C5—H5A116.9C16—C15—H15A109.2
C5—C6—C10122.0 (4)C14—C15—H15A109.2
C5—C6—C7123.1 (4)C16—C15—H15B109.2
C10—C6—C7114.7 (4)C14—C15—H15B109.2
C6—C7—C8111.8 (4)H15A—C15—H15B107.9
C6—C7—C13111.4 (4)C17—C16—C15111.0 (4)
C8—C7—C13114.4 (4)C17—C16—H16A109.4
C6—C7—H7A106.2C15—C16—H16A109.4
C8—C7—H7A106.2C17—C16—H16B109.4
C13—C7—H7A106.2C15—C16—H16B109.4
C9—C8—C7111.6 (4)H16A—C16—H16B108.0
C9—C8—H8A109.3C16—C17—C13113.4 (4)
C7—C8—H8A109.3C16—C17—H17A108.9
C9—C8—H8B109.3C13—C17—H17A108.9
C7—C8—H8B109.3C16—C17—H17B108.9
H8A—C8—H8B108.0C13—C17—H17B108.9
C8—C9—C4110.8 (5)H17A—C17—H17B107.7
C8—C9—H9A109.5C13—C18—H18A109.5
C4—C9—H9A109.5C13—C18—H18B109.5
C8—C9—H9B109.5H18A—C18—H18B109.5
C4—C9—H9B109.5C13—C18—H18C109.5
H9A—C9—H9B108.1H18A—C18—H18C109.5
C6—C10—C11114.5 (4)H18B—C18—H18C109.5
C6—C10—H10A108.6C14—C19—H19A109.5
C11—C10—H10A108.6C14—C19—H19B109.5
C6—C10—H10B108.6H19A—C19—H19B109.5
C11—C10—H10B108.6C14—C19—H19C109.5
H10A—C10—H10B107.6H19A—C19—H19C109.5
C10—C11—C12109.1 (4)H19B—C19—H19C109.5
C10—C11—H11A109.9O1—C20—O2120.0 (5)
C12—C11—H11A109.9O1—C20—C14121.1 (4)
C10—C11—H11B109.9O2—C20—C14118.8 (4)
C1—C2—C4—C5−138.0 (10)C14—C12—C13—C7−163.7 (4)
C1—C2—C4—C9−16.1 (13)C6—C7—C13—C1866.0 (5)
C1—C2—C4—C3105.6 (12)C8—C7—C13—C18−62.1 (5)
C2—C4—C5—C6108.1 (7)C6—C7—C13—C12−57.6 (4)
C9—C4—C5—C6−17.6 (9)C8—C7—C13—C12174.3 (4)
C3—C4—C5—C6−136.1 (6)C6—C7—C13—C17−174.2 (4)
C4—C5—C6—C10170.2 (5)C8—C7—C13—C1757.7 (5)
C4—C5—C6—C7−5.4 (9)C11—C12—C14—C20−65.6 (5)
C5—C6—C7—C8−4.4 (7)C13—C12—C14—C20163.0 (4)
C10—C6—C7—C8179.7 (4)C11—C12—C14—C1955.8 (5)
C5—C6—C7—C13−133.9 (5)C13—C12—C14—C19−75.5 (5)
C10—C6—C7—C1350.2 (5)C11—C12—C14—C15179.8 (4)
C6—C7—C8—C937.2 (6)C13—C12—C14—C1548.4 (5)
C13—C7—C8—C9165.1 (4)C20—C14—C15—C16−168.9 (4)
C7—C8—C9—C4−61.6 (6)C19—C14—C15—C1674.3 (5)
C5—C4—C9—C849.7 (7)C12—C14—C15—C16−52.4 (6)
C2—C4—C9—C8−72.5 (6)C14—C15—C16—C1759.3 (6)
C3—C4—C9—C8167.2 (5)C15—C16—C17—C13−58.9 (6)
C5—C6—C10—C11137.5 (5)C18—C13—C17—C16−74.5 (5)
C7—C6—C10—C11−46.6 (6)C12—C13—C17—C1650.8 (5)
C6—C10—C11—C1250.2 (6)C7—C13—C17—C16165.9 (4)
C10—C11—C12—C13−60.7 (5)C19—C14—C20—O118.5 (7)
C10—C11—C12—C14164.6 (4)C15—C14—C20—O1−99.2 (6)
C11—C12—C13—C18−56.5 (5)C12—C14—C20—O1143.8 (5)
C14—C12—C13—C1875.7 (5)C19—C14—C20—O2−160.4 (5)
C11—C12—C13—C17−179.2 (4)C15—C14—C20—O281.9 (6)
C14—C12—C13—C17−47.0 (5)C12—C14—C20—O2−35.2 (7)
C11—C12—C13—C764.1 (4)
  4 in total

1.  Trypanocidal activity of oleoresin and terpenoids isolated from Pinus oocarpa.

Authors:  Julieta Rubio; José S Calderón; Angélica Flores; Clementina Castroa; Carlos L Céspedes
Journal:  Z Naturforsch C J Biosci       Date:  2005 Sep-Oct

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Resin acids; the position of the ring double bond in dextropimaric acid and the structure of isodextropimaric acid.

Authors:  G C HARRIS; T F SANDERSON
Journal:  J Am Chem Soc       Date:  1948-06       Impact factor: 15.419

4.  Molecular basis of pimarane compounds as novel activators of large-conductance Ca(2+)-activated K(+) channel alpha-subunit.

Authors:  Yuji Imaizumi; Kazuho Sakamoto; Aki Yamada; Aya Hotta; Susumu Ohya; Katsuhiko Muraki; Masanobu Uchiyama; Tomohiko Ohwada
Journal:  Mol Pharmacol       Date:  2002-10       Impact factor: 4.436

  4 in total

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