Literature DB >> 21583928

7-(2,4-Dichloro-phen-yl)-2-methyl-sulfanyl-pyrazolo[1,5-a]pyrimidine-3-carbonitrile.

Li-Rong Wen1, Huai-Yuan Xie, Shu-Wen Wang.   

Abstract

In the mol-ecule of the title compound, C(14)H(8)Cl(2)N(4)S, all the ring atoms in the pyrazolopyrimidine system are almost coplanar, the largest deviation from the mean plane being 0.027 (2) Å for a C atom. The conformation of the methyl-sulfanyl group is anti-periplanar, with a torsion angle of -176.7 (2)°. A weak inter-molecular C-H⋯N hydrogen bond and a Cl⋯N halogen bond [Cl⋯N = 3.196 (5) Å] with a nearly linear N⋯Cl-C angle [174.2 (1)°] link the mol-ecules into a two-dimensional assembly. Face-to-face π-π stacking, with a centroid-centroid separation of 3.557 (2) Å and an angle of 7.1 (1)° between the two planes, completes the inter-molecular inter-actions in the solid state.

Entities:  

Year:  2009        PMID: 21583928      PMCID: PMC2977792          DOI: 10.1107/S1600536809014792

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of pyrazolo[1,5-a]pyrimidine derivatives, see: Li et al. (1995 ▶). For applications of enamino­nes, see: El-Taweei et al. (2001 ▶); Hernandez et al. (2003 ▶); Olivera et al. (2000 ▶). For bond-length data, see: Allen et al. (1987 ▶). For Cl⋯N halogen bonds, see: Chu, et al. (2001 ▶); Lommerse et al. (1996 ▶); Ramasubbu et al. (1986 ▶).

Experimental

Crystal data

C14H8Cl2N4S M = 335.20 Monoclinic, a = 8.230 (2) Å b = 14.656 (4) Å c = 12.667 (4) Å β = 108.460 (5)° V = 1449.3 (7) Å3 Z = 4 Mo Kα radiation μ = 0.59 mm−1 T = 293 K 0.32 × 0.26 × 0.22 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.814, T max = 0.879 8252 measured reflections 2965 independent reflections 2181 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.095 S = 1.04 2965 reflections 191 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.29 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1999 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809014792/zl2192sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809014792/zl2192Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H8Cl2N4SF(000) = 680
Mr = 335.20Dx = 1.536 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 970 reflections
a = 8.230 (2) Åθ = 2.8–26.3°
b = 14.656 (4) ŵ = 0.59 mm1
c = 12.667 (4) ÅT = 293 K
β = 108.460 (5)°Prism, colorless
V = 1449.3 (7) Å30.32 × 0.26 × 0.22 mm
Z = 4
Bruker SMART CCD area-detector diffractometer2965 independent reflections
Radiation source: fine-focus sealed tube2181 reflections with I > 2σ(I)
graphiteRint = 0.032
φ and ω scansθmax = 26.4°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −6→10
Tmin = 0.814, Tmax = 0.879k = −16→18
8252 measured reflectionsl = −15→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.095H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0395P)2 + 0.5056P] where P = (Fo2 + 2Fc2)/3
2965 reflections(Δ/σ)max = 0.001
191 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.07522 (9)1.04589 (4)0.33961 (6)0.0515 (2)
Cl10.27654 (9)0.56767 (4)0.47097 (6)0.0587 (2)
Cl20.81796 (7)0.72025 (5)0.77238 (6)0.0570 (2)
N10.1176 (2)0.88388 (12)0.44665 (15)0.0337 (4)
N20.0148 (2)0.81205 (12)0.45471 (14)0.0304 (4)
N4−0.4254 (3)0.99138 (17)0.2170 (2)0.0694 (8)
C10.3585 (3)0.65420 (15)0.56647 (18)0.0351 (5)
C20.5304 (3)0.65097 (16)0.62770 (19)0.0399 (6)
H20.59820.60250.61930.048*
C30.6000 (3)0.72040 (16)0.70121 (19)0.0373 (5)
C40.4996 (3)0.79158 (16)0.71666 (19)0.0385 (5)
H40.54680.83730.76810.046*
C50.3289 (3)0.79383 (16)0.65490 (19)0.0383 (5)
H50.26160.84200.66480.046*
C60.2541 (3)0.72596 (14)0.57789 (18)0.0317 (5)
C70.0708 (3)0.73292 (15)0.51216 (18)0.0335 (5)
C8−0.0531 (3)0.66876 (16)0.5045 (2)0.0437 (6)
H8−0.02430.61320.54110.052*
C9−0.2230 (3)0.68669 (18)0.4416 (2)0.0479 (6)
H9−0.30360.64120.43760.057*
N3−0.2771 (2)0.76324 (14)0.38782 (17)0.0427 (5)
C10−0.1555 (3)0.82588 (15)0.39444 (18)0.0336 (5)
C11−0.1611 (3)0.91130 (15)0.34518 (18)0.0352 (5)
C120.0087 (3)0.94280 (15)0.38006 (18)0.0342 (5)
C130.3024 (4)1.0381 (2)0.4068 (3)0.0697 (9)
H13A0.32491.02290.48380.105*
H13B0.35471.09570.40120.105*
H13C0.34890.99160.37140.105*
C14−0.3084 (3)0.95536 (16)0.2741 (2)0.0429 (6)
U11U22U33U12U13U23
S10.0594 (4)0.0374 (4)0.0588 (4)0.0004 (3)0.0206 (3)0.0114 (3)
Cl10.0602 (4)0.0408 (4)0.0615 (4)0.0086 (3)−0.0002 (3)−0.0164 (3)
Cl20.0290 (3)0.0678 (5)0.0654 (5)0.0002 (3)0.0025 (3)0.0056 (4)
N10.0313 (10)0.0320 (10)0.0379 (11)0.0008 (8)0.0110 (8)0.0017 (8)
N20.0266 (9)0.0312 (10)0.0319 (10)0.0020 (7)0.0069 (7)0.0012 (8)
N40.0641 (15)0.0544 (15)0.0648 (16)0.0238 (12)−0.0150 (13)−0.0040 (12)
C10.0396 (13)0.0294 (11)0.0335 (12)0.0021 (10)0.0075 (10)0.0003 (10)
C20.0361 (13)0.0379 (13)0.0445 (14)0.0101 (10)0.0113 (11)0.0052 (11)
C30.0276 (11)0.0421 (13)0.0400 (13)−0.0003 (10)0.0075 (10)0.0083 (11)
C40.0385 (13)0.0377 (13)0.0347 (12)−0.0040 (10)0.0049 (10)−0.0013 (10)
C50.0391 (13)0.0346 (13)0.0388 (13)0.0072 (10)0.0089 (10)−0.0002 (10)
C60.0309 (11)0.0302 (11)0.0312 (11)0.0028 (9)0.0056 (9)0.0034 (9)
C70.0338 (12)0.0325 (12)0.0323 (12)0.0048 (9)0.0079 (10)0.0029 (9)
C80.0417 (14)0.0374 (14)0.0475 (15)−0.0015 (11)0.0075 (11)0.0110 (11)
C90.0385 (14)0.0461 (15)0.0550 (16)−0.0102 (11)0.0089 (12)0.0053 (12)
N30.0289 (10)0.0456 (12)0.0497 (12)−0.0016 (9)0.0070 (9)0.0027 (10)
C100.0280 (11)0.0383 (13)0.0327 (12)0.0045 (10)0.0069 (9)−0.0005 (10)
C110.0353 (12)0.0347 (12)0.0319 (12)0.0072 (10)0.0054 (9)0.0002 (10)
C120.0391 (12)0.0320 (12)0.0319 (12)0.0021 (10)0.0117 (10)0.0001 (10)
C130.0535 (17)0.0595 (19)0.104 (3)−0.0107 (14)0.0367 (17)0.0076 (18)
C140.0450 (14)0.0362 (13)0.0393 (13)0.0077 (11)0.0016 (11)−0.0040 (11)
S1—C121.739 (2)C5—C61.393 (3)
S1—C131.796 (3)C5—H50.9300
Cl1—C11.735 (2)C6—C71.478 (3)
Cl2—C31.734 (2)C7—C81.368 (3)
N1—C121.335 (3)C8—C91.398 (3)
N1—N21.375 (2)C8—H80.9300
N2—C71.369 (3)C9—N31.315 (3)
N2—C101.383 (3)C9—H90.9300
N4—C141.135 (3)N3—C101.341 (3)
C1—C21.382 (3)C10—C111.393 (3)
C1—C61.394 (3)C11—C121.404 (3)
C2—C31.376 (3)C11—C141.416 (3)
C2—H20.9300C13—H13A0.9600
C3—C41.383 (3)C13—H13B0.9600
C4—C51.375 (3)C13—H13C0.9600
C4—H40.9300
C12—S1—C13100.53 (12)N2—C7—C6118.02 (18)
C12—N1—N2103.65 (17)C7—C8—C9120.0 (2)
C7—N2—N1125.20 (17)C7—C8—H8120.0
C7—N2—C10121.97 (18)C9—C8—H8120.0
N1—N2—C10112.79 (17)N3—C9—C8124.7 (2)
C2—C1—C6121.5 (2)N3—C9—H9117.6
C2—C1—Cl1117.98 (17)C8—C9—H9117.6
C6—C1—Cl1120.48 (17)C9—N3—C10115.34 (19)
C3—C2—C1119.2 (2)N3—C10—N2122.7 (2)
C3—C2—H2120.4N3—C10—C11132.0 (2)
C1—C2—H2120.4N2—C10—C11105.25 (18)
C2—C3—C4120.9 (2)C10—C11—C12105.43 (18)
C2—C3—Cl2119.44 (18)C10—C11—C14126.5 (2)
C4—C3—Cl2119.59 (18)C12—C11—C14128.1 (2)
C5—C4—C3119.1 (2)N1—C12—C11112.9 (2)
C5—C4—H4120.4N1—C12—S1122.49 (17)
C3—C4—H4120.4C11—C12—S1124.61 (17)
C4—C5—C6121.8 (2)S1—C13—H13A109.5
C4—C5—H5119.1S1—C13—H13B109.5
C6—C5—H5119.1H13A—C13—H13B109.5
C5—C6—C1117.5 (2)S1—C13—H13C109.5
C5—C6—C7119.43 (19)H13A—C13—H13C109.5
C1—C6—C7123.12 (19)H13B—C13—H13C109.5
C8—C7—N2115.24 (19)N4—C14—C11179.3 (3)
C8—C7—C6126.7 (2)
C12—N1—N2—C7177.7 (2)N2—C7—C8—C9−0.3 (3)
C12—N1—N2—C10−0.1 (2)C6—C7—C8—C9177.8 (2)
C6—C1—C2—C3−0.3 (3)C7—C8—C9—N3−0.8 (4)
Cl1—C1—C2—C3177.75 (18)C8—C9—N3—C101.3 (4)
C1—C2—C3—C41.8 (4)C9—N3—C10—N2−0.9 (3)
C1—C2—C3—Cl2−176.31 (18)C9—N3—C10—C11176.2 (2)
C2—C3—C4—C5−1.9 (4)C7—N2—C10—N3−0.1 (3)
Cl2—C3—C4—C5176.16 (18)N1—N2—C10—N3177.8 (2)
C3—C4—C5—C60.6 (4)C7—N2—C10—C11−177.85 (19)
C4—C5—C6—C10.9 (3)N1—N2—C10—C110.1 (2)
C4—C5—C6—C7−178.7 (2)N3—C10—C11—C12−177.4 (2)
C2—C1—C6—C5−1.0 (3)N2—C10—C11—C120.0 (2)
Cl1—C1—C6—C5−179.02 (18)N3—C10—C11—C141.9 (4)
C2—C1—C6—C7178.6 (2)N2—C10—C11—C14179.4 (2)
Cl1—C1—C6—C70.6 (3)N2—N1—C12—C110.1 (2)
N1—N2—C7—C8−177.0 (2)N2—N1—C12—S1−178.37 (15)
C10—N2—C7—C80.7 (3)C10—C11—C12—N1−0.1 (3)
N1—N2—C7—C64.8 (3)C14—C11—C12—N1−179.5 (2)
C10—N2—C7—C6−177.55 (19)C10—C11—C12—S1178.38 (17)
C5—C6—C7—C8−125.1 (3)C14—C11—C12—S1−1.0 (3)
C1—C6—C7—C855.3 (3)C13—S1—C12—N11.7 (2)
C5—C6—C7—N252.9 (3)C13—S1—C12—C11−176.7 (2)
C1—C6—C7—N2−126.7 (2)
D—H···AD—HH···AD···AD—H···A
C8—H8···N4i0.932.613.474 (3)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C8—H8⋯N4i0.932.613.474 (3)154

Symmetry code: (i) .

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