Literature DB >> 21583914

Diethyl 1,4-dioxo-1,2,2a,3,4,10b-hexahydro-5H,10H-2,3,4a,10a-tetraaza-benzo[g]cyclopenta[cd]azulene-2a,10b-dicarboxylate.

Jing Qin1.   

Abstract

In the title compound, C(18)H(20)N(4)O(6), the dihedral angle between the two fused five-membered rings in the glycoluril unit is 64.42 (2)°. The crystal structure features inter-molecular N-H⋯O and C-H⋯O interactions. An intramolecular C-H⋯O contact is also present.

Entities:  

Year:  2009        PMID: 21583914      PMCID: PMC2977778          DOI: 10.1107/S1600536809014548

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation of the title compound, see: Wu et al. (2002a ▶). For crystal engineering studies of glycoluril and its derivatives, see: Chen et al. (2007 ▶); Wang et al. (2006 ▶); Johnson et al. (2002 ▶); Wu et al. (2002b ▶).

Experimental

Crystal data

C18H20N4O6 M = 388.38 Triclinic, a = 8.1394 (5) Å b = 9.4425 (5) Å c = 13.3576 (8) Å α = 93.1550 (10)° β = 96.0560 (10)° γ = 112.3970 (10)° V = 938.80 (9) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 294 K 0.20 × 0.20 × 0.10 mm

Data collection

Bruker SMART 4K CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1997 ▶) T min = 0.976, T max = 0.989 7700 measured reflections 3624 independent reflections 3028 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.144 S = 1.05 3624 reflections 261 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.20 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809014548/nc2142sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809014548/nc2142Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H20N4O6Z = 2
Mr = 388.38F(000) = 408
Triclinic, P1Dx = 1.374 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.1394 (5) ÅCell parameters from 3262 reflections
b = 9.4425 (5) Åθ = 2.4–27.5°
c = 13.3576 (8) ŵ = 0.11 mm1
α = 93.155 (1)°T = 294 K
β = 96.056 (1)°Block, colorless
γ = 112.397 (1)°0.20 × 0.20 × 0.10 mm
V = 938.80 (9) Å3
Bruker SMART 4K CCD area-detector diffractometer3624 independent reflections
Radiation source: fine-focus sealed tube3028 reflections with I > 2σ(I)
graphiteRint = 0.020
φ and ω scansθmax = 26.0°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1997)h = −10→8
Tmin = 0.976, Tmax = 0.989k = −11→11
7700 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.144H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0741P)2 + 0.3055P] where P = (Fo2 + 2Fc2)/3
3624 reflections(Δ/σ)max = 0.005
261 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.7535 (3)0.3332 (2)0.06082 (12)0.0350 (4)
C20.6905 (3)0.1940 (2)0.00001 (15)0.0442 (5)
H20.57140.1512−0.02980.053*
C30.8025 (3)0.1180 (2)−0.01692 (16)0.0516 (5)
H30.75890.0250−0.05790.062*
C40.9787 (3)0.1811 (2)0.02733 (16)0.0515 (5)
H41.05520.13180.01520.062*
C51.0421 (3)0.3177 (2)0.08982 (15)0.0437 (5)
H51.16070.35810.12070.052*
C60.9321 (2)0.3955 (2)0.10733 (12)0.0352 (4)
C70.6302 (3)0.4178 (2)0.07030 (12)0.0375 (4)
H7A0.67810.51300.03910.045*
H7B0.51410.35560.03210.045*
C81.0095 (2)0.5470 (2)0.17322 (13)0.0359 (4)
H8A1.13230.56660.20060.043*
H8B1.01230.62870.13160.043*
C90.4886 (3)0.3441 (2)0.22434 (14)0.0392 (4)
C100.9584 (3)0.5307 (2)0.35329 (13)0.0395 (4)
C110.7426 (2)0.5735 (2)0.24235 (12)0.0330 (4)
C120.7751 (3)0.7358 (2)0.20982 (13)0.0372 (4)
C130.9500 (4)1.0015 (3)0.2570 (2)0.0691 (7)
H13A1.04811.03060.21680.083*
H13B0.84941.01520.21950.083*
C141.0045 (7)1.0966 (3)0.3520 (3)0.1181 (14)
H14A0.90411.07290.38910.177*
H14B1.04691.20310.33980.177*
H14C1.09881.07740.39060.177*
C150.6771 (3)0.5423 (2)0.34897 (13)0.0379 (4)
C160.6154 (3)0.6578 (2)0.40178 (14)0.0412 (4)
C170.4679 (4)0.8288 (3)0.3831 (2)0.0741 (8)
H17A0.56090.90120.43350.089*
H17B0.36390.77560.41600.089*
C180.4201 (6)0.9114 (4)0.3022 (3)0.1120 (13)
H18A0.52520.96870.27270.168*
H18B0.37180.98080.33000.168*
H18C0.33210.83860.25110.168*
N10.6035 (2)0.45511 (17)0.17377 (10)0.0356 (4)
N20.9101 (2)0.55255 (17)0.25637 (10)0.0345 (4)
N30.5268 (3)0.3968 (2)0.32473 (13)0.0491 (4)
H3A0.456 (3)0.355 (3)0.3683 (19)0.059*
N40.8307 (3)0.5358 (2)0.40898 (13)0.0532 (5)
H4A0.835 (3)0.525 (3)0.472 (2)0.064*
O10.37312 (19)0.22369 (16)0.18597 (12)0.0528 (4)
O21.0959 (2)0.51339 (19)0.38374 (10)0.0531 (4)
O30.7018 (2)0.75960 (17)0.13482 (10)0.0552 (4)
O40.8984 (2)0.84003 (15)0.27670 (11)0.0526 (4)
O50.6376 (3)0.68292 (19)0.49151 (11)0.0644 (5)
O60.5323 (2)0.71765 (18)0.33836 (11)0.0556 (4)
U11U22U33U12U13U23
C10.0430 (10)0.0384 (9)0.0271 (8)0.0191 (8)0.0058 (7)0.0050 (7)
C20.0461 (11)0.0437 (10)0.0410 (10)0.0161 (9)0.0054 (8)0.0024 (8)
C30.0708 (15)0.0391 (11)0.0507 (12)0.0266 (11)0.0138 (11)0.0024 (9)
C40.0657 (15)0.0492 (12)0.0557 (12)0.0368 (11)0.0181 (11)0.0113 (10)
C50.0426 (11)0.0528 (11)0.0450 (10)0.0261 (10)0.0106 (9)0.0166 (9)
C60.0391 (10)0.0427 (10)0.0286 (8)0.0197 (8)0.0072 (7)0.0108 (7)
C70.0406 (10)0.0476 (10)0.0266 (8)0.0221 (9)−0.0021 (7)−0.0009 (7)
C80.0340 (10)0.0443 (10)0.0305 (9)0.0155 (8)0.0059 (7)0.0078 (7)
C90.0373 (10)0.0384 (10)0.0451 (10)0.0186 (9)0.0059 (8)0.0022 (8)
C100.0412 (11)0.0464 (10)0.0293 (9)0.0160 (9)0.0003 (8)0.0062 (8)
C110.0354 (10)0.0382 (9)0.0262 (8)0.0151 (8)0.0042 (7)0.0044 (7)
C120.0419 (10)0.0411 (10)0.0312 (9)0.0186 (9)0.0061 (8)0.0055 (7)
C130.0793 (18)0.0386 (12)0.0763 (17)0.0093 (12)0.0038 (14)0.0123 (11)
C140.170 (4)0.0489 (16)0.107 (3)0.019 (2)0.001 (3)−0.0135 (16)
C150.0405 (10)0.0436 (10)0.0296 (9)0.0160 (9)0.0055 (7)0.0056 (7)
C160.0412 (11)0.0415 (10)0.0350 (10)0.0092 (9)0.0087 (8)−0.0008 (8)
C170.0743 (18)0.0650 (16)0.096 (2)0.0388 (15)0.0268 (15)−0.0014 (14)
C180.123 (3)0.088 (2)0.143 (3)0.070 (2)−0.014 (3)0.001 (2)
N10.0346 (8)0.0415 (8)0.0296 (7)0.0153 (7)0.0002 (6)0.0005 (6)
N20.0339 (8)0.0433 (8)0.0263 (7)0.0155 (7)0.0013 (6)0.0051 (6)
N30.0571 (11)0.0412 (9)0.0423 (9)0.0088 (8)0.0185 (8)0.0041 (7)
N40.0579 (12)0.0867 (14)0.0265 (8)0.0393 (11)0.0068 (8)0.0152 (8)
O10.0427 (8)0.0437 (8)0.0624 (9)0.0079 (7)0.0054 (7)−0.0045 (7)
O20.0493 (9)0.0791 (11)0.0373 (7)0.0323 (8)0.0003 (6)0.0148 (7)
O30.0773 (11)0.0517 (9)0.0407 (8)0.0328 (8)−0.0054 (7)0.0069 (6)
O40.0588 (9)0.0372 (7)0.0505 (8)0.0091 (7)−0.0048 (7)0.0069 (6)
O50.0891 (13)0.0677 (10)0.0367 (8)0.0307 (9)0.0136 (8)−0.0042 (7)
O60.0633 (10)0.0630 (9)0.0520 (9)0.0378 (8)0.0095 (7)0.0002 (7)
C1—C21.390 (3)C11—C121.548 (2)
C1—C61.401 (3)C11—C151.577 (2)
C1—C71.513 (2)C12—O31.188 (2)
C2—C31.386 (3)C12—O41.317 (2)
C2—H20.9300C13—C141.437 (4)
C3—C41.375 (3)C13—O41.466 (3)
C3—H30.9300C13—H13A0.9700
C4—C51.382 (3)C13—H13B0.9700
C4—H40.9300C14—H14A0.9600
C5—C61.387 (3)C14—H14B0.9600
C5—H50.9300C14—H14C0.9600
C6—C81.508 (3)C15—N41.437 (2)
C7—N11.466 (2)C15—N31.441 (3)
C7—H7A0.9700C15—C161.531 (3)
C7—H7B0.9700C16—O51.190 (2)
C8—N21.451 (2)C16—O61.311 (2)
C8—H8A0.9700C17—O61.466 (3)
C8—H8B0.9700C17—C181.471 (4)
C9—O11.208 (2)C17—H17A0.9700
C9—N31.365 (3)C17—H17B0.9700
C9—N11.376 (2)C18—H18A0.9600
C10—O21.223 (2)C18—H18B0.9600
C10—N41.354 (3)C18—H18C0.9600
C10—N21.363 (2)N3—H3A0.87 (3)
C11—N11.440 (2)N4—H4A0.85 (3)
C11—N21.445 (2)
C2—C1—C6119.23 (17)C14—C13—H13A109.9
C2—C1—C7119.00 (17)O4—C13—H13A109.9
C6—C1—C7121.69 (16)C14—C13—H13B109.9
C3—C2—C1121.0 (2)O4—C13—H13B109.9
C3—C2—H2119.5H13A—C13—H13B108.3
C1—C2—H2119.5C13—C14—H14A109.5
C4—C3—C2119.5 (2)C13—C14—H14B109.5
C4—C3—H3120.3H14A—C14—H14B109.5
C2—C3—H3120.3C13—C14—H14C109.5
C3—C4—C5120.1 (2)H14A—C14—H14C109.5
C3—C4—H4120.0H14B—C14—H14C109.5
C5—C4—H4120.0N4—C15—N3114.94 (17)
C4—C5—C6121.16 (19)N4—C15—C16110.13 (16)
C4—C5—H5119.4N3—C15—C16109.09 (16)
C6—C5—H5119.4N4—C15—C11102.62 (15)
C5—C6—C1118.94 (18)N3—C15—C11101.34 (14)
C5—C6—C8119.12 (17)C16—C15—C11118.67 (15)
C1—C6—C8121.91 (16)O5—C16—O6125.5 (2)
N1—C7—C1115.68 (14)O5—C16—C15121.54 (18)
N1—C7—H7A108.4O6—C16—C15112.92 (15)
C1—C7—H7A108.4O6—C17—C18108.6 (3)
N1—C7—H7B108.4O6—C17—H17A110.0
C1—C7—H7B108.4C18—C17—H17A110.0
H7A—C7—H7B107.4O6—C17—H17B110.0
N2—C8—C6113.76 (15)C18—C17—H17B110.0
N2—C8—H8A108.8H17A—C17—H17B108.3
C6—C8—H8A108.8C17—C18—H18A109.5
N2—C8—H8B108.8C17—C18—H18B109.5
C6—C8—H8B108.8H18A—C18—H18B109.5
H8A—C8—H8B107.7C17—C18—H18C109.5
O1—C9—N3126.68 (18)H18A—C18—H18C109.5
O1—C9—N1125.85 (18)H18B—C18—H18C109.5
N3—C9—N1107.45 (16)C9—N1—C11111.93 (14)
O2—C10—N4126.78 (16)C9—N1—C7120.52 (15)
O2—C10—N2125.11 (18)C11—N1—C7121.64 (15)
N4—C10—N2108.09 (16)C10—N2—C11113.25 (15)
N1—C11—N2113.91 (14)C10—N2—C8124.21 (15)
N1—C11—C12111.49 (13)C11—N2—C8122.46 (13)
N2—C11—C12109.92 (14)C9—N3—C15114.32 (16)
N1—C11—C15103.63 (14)C9—N3—H3A122.6 (16)
N2—C11—C15101.80 (13)C15—N3—H3A122.3 (16)
C12—C11—C15115.76 (14)C10—N4—C15113.12 (15)
O3—C12—O4126.43 (17)C10—N4—H4A123.5 (17)
O3—C12—C11124.36 (17)C15—N4—H4A123.0 (17)
O4—C12—C11109.19 (14)C12—O4—C13116.92 (16)
C14—C13—O4108.9 (2)C16—O6—C17116.28 (18)
C6—C1—C2—C3−1.4 (3)O1—C9—N1—C7−17.8 (3)
C7—C1—C2—C3175.22 (17)N3—C9—N1—C7163.56 (16)
C1—C2—C3—C40.2 (3)N2—C11—N1—C997.72 (17)
C2—C3—C4—C51.3 (3)C12—C11—N1—C9−137.17 (15)
C3—C4—C5—C6−1.5 (3)C15—C11—N1—C9−12.01 (18)
C4—C5—C6—C10.3 (3)N2—C11—N1—C7−55.3 (2)
C4—C5—C6—C8−177.86 (17)C12—C11—N1—C769.8 (2)
C2—C1—C6—C51.2 (2)C15—C11—N1—C7−165.00 (14)
C7—C1—C6—C5−175.36 (16)C1—C7—N1—C9−78.3 (2)
C2—C1—C6—C8179.26 (16)C1—C7—N1—C1172.4 (2)
C7—C1—C6—C82.7 (2)O2—C10—N2—C11−178.59 (18)
C2—C1—C7—N1124.69 (18)N4—C10—N2—C11−0.2 (2)
C6—C1—C7—N1−58.8 (2)O2—C10—N2—C84.8 (3)
C5—C6—C8—N2−126.25 (17)N4—C10—N2—C8−176.82 (17)
C1—C6—C8—N255.7 (2)N1—C11—N2—C10−116.92 (17)
N1—C11—C12—O3−3.8 (3)C12—C11—N2—C10117.15 (16)
N2—C11—C12—O3123.5 (2)C15—C11—N2—C10−6.07 (19)
C15—C11—C12—O3−121.9 (2)N1—C11—N2—C859.8 (2)
N1—C11—C12—O4177.71 (15)C12—C11—N2—C8−66.1 (2)
N2—C11—C12—O4−55.00 (19)C15—C11—N2—C8170.64 (15)
C15—C11—C12—O459.6 (2)C6—C8—N2—C1099.2 (2)
N1—C11—C15—N4127.94 (15)C6—C8—N2—C11−77.2 (2)
N2—C11—C15—N49.48 (18)O1—C9—N3—C15177.73 (18)
C12—C11—C15—N4−109.69 (17)N1—C9—N3—C15−3.7 (2)
N1—C11—C15—N38.88 (17)N4—C15—N3—C9−113.33 (19)
N2—C11—C15—N3−109.58 (15)C16—C15—N3—C9122.44 (18)
C12—C11—C15—N3131.26 (16)C11—C15—N3—C9−3.5 (2)
N1—C11—C15—C16−110.44 (17)O2—C10—N4—C15−174.2 (2)
N2—C11—C15—C16131.09 (17)N2—C10—N4—C157.4 (2)
C12—C11—C15—C1611.9 (2)N3—C15—N4—C1098.4 (2)
N4—C15—C16—O5−29.5 (3)C16—C15—N4—C10−137.96 (18)
N3—C15—C16—O597.5 (2)C11—C15—N4—C10−10.7 (2)
C11—C15—C16—O5−147.25 (19)O3—C12—O4—C130.2 (3)
N4—C15—C16—O6153.07 (17)C11—C12—O4—C13178.62 (19)
N3—C15—C16—O6−79.91 (19)C14—C13—O4—C12150.2 (3)
C11—C15—C16—O635.3 (2)O5—C16—O6—C172.3 (3)
O1—C9—N1—C11−171.16 (18)C15—C16—O6—C17179.63 (19)
N3—C9—N1—C1110.2 (2)C18—C17—O6—C16166.1 (2)
D—H···AD—HH···AD···AD—H···A
C7—H7A···O30.972.523.107 (2)119
C17—H17B···O2i0.972.583.343 (3)136
C7—H7B···O3ii0.972.593.478 (2)153
N4—H4A···O2iii0.85 (3)2.05 (3)2.871 (2)165 (2)
N3—H3A···O5iv0.87 (3)2.09 (3)2.917 (2)159 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7A⋯O30.972.523.107 (2)119
C17—H17B⋯O2i0.972.583.343 (3)136
C7—H7B⋯O3ii0.972.593.478 (2)153
N4—H4A⋯O2iii0.85 (3)2.05 (3)2.871 (2)165 (2)
N3—H3A⋯O5iv0.87 (3)2.09 (3)2.917 (2)159 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  5 in total

1.  New supramolecular organization for a glycoluril: chiral hydrogen-bonded ribbons.

Authors:  Darren W Johnson; Liam C Palmer; Fraser Hof; Peter M Iovine; Julius Rebek
Journal:  Chem Commun (Camb)       Date:  2002-10-07       Impact factor: 6.222

2.  Substituent effects control the self-association of molecular clips in the crystalline state.

Authors:  Zhi-Guo Wang; Bao-Han Zhou; Yun-Feng Chen; Guo-Dong Yin; Yi-Tao Li; An-Xin Wu; Lyle Isaacs
Journal:  J Org Chem       Date:  2006-06-09       Impact factor: 4.354

3.  Chiral molecular clips control orthogonal crystalline organization.

Authors:  Yunfeng Chen; Nengfang She; Xianggao Meng; Guodong Yin; Anxin Wu; Lyle Isaacs
Journal:  Org Lett       Date:  2007-04-18       Impact factor: 6.005

4.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

5.  Methylene-bridged glycoluril dimers: synthetic methods.

Authors:  Anxin Wu; Arindam Chakraborty; Dariusz Witt; Jason Lagona; Fehmi Damkaci; Marie A Ofori; Jessica K Chiles; James C Fettinger; Lyle Isaacs
Journal:  J Org Chem       Date:  2002-08-09       Impact factor: 4.354

  5 in total

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