| Literature DB >> 21583914 |
Jing Qin1.
Abstract
In the title compound, C(18)H(20)N(4)O(6), the dihedral angle between the two fused five-membered rings in the glycoluril unit is 64.42 (2)°. The crystal structure features inter-molecular N-H⋯O and C-H⋯O interactions. An intramolecular C-H⋯O contact is also present.Entities:
Year: 2009 PMID: 21583914 PMCID: PMC2977778 DOI: 10.1107/S1600536809014548
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C18H20N4O6 | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 3262 reflections | |
| θ = 2.4–27.5° | |
| µ = 0.11 mm−1 | |
| α = 93.155 (1)° | |
| β = 96.056 (1)° | Block, colorless |
| γ = 112.397 (1)° | 0.20 × 0.20 × 0.10 mm |
| Bruker SMART 4K CCD area-detector diffractometer | 3624 independent reflections |
| Radiation source: fine-focus sealed tube | 3028 reflections with |
| graphite | |
| φ and ω scans | θmax = 26.0°, θmin = 1.5° |
| Absorption correction: multi-scan ( | |
| 7700 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3624 reflections | (Δ/σ)max = 0.005 |
| 261 parameters | Δρmax = 0.28 e Å−3 |
| 0 restraints | Δρmin = −0.20 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.7535 (3) | 0.3332 (2) | 0.06082 (12) | 0.0350 (4) | |
| C2 | 0.6905 (3) | 0.1940 (2) | 0.00001 (15) | 0.0442 (5) | |
| H2 | 0.5714 | 0.1512 | −0.0298 | 0.053* | |
| C3 | 0.8025 (3) | 0.1180 (2) | −0.01692 (16) | 0.0516 (5) | |
| H3 | 0.7589 | 0.0250 | −0.0579 | 0.062* | |
| C4 | 0.9787 (3) | 0.1811 (2) | 0.02733 (16) | 0.0515 (5) | |
| H4 | 1.0552 | 0.1318 | 0.0152 | 0.062* | |
| C5 | 1.0421 (3) | 0.3177 (2) | 0.08982 (15) | 0.0437 (5) | |
| H5 | 1.1607 | 0.3581 | 0.1207 | 0.052* | |
| C6 | 0.9321 (2) | 0.3955 (2) | 0.10733 (12) | 0.0352 (4) | |
| C7 | 0.6302 (3) | 0.4178 (2) | 0.07030 (12) | 0.0375 (4) | |
| H7A | 0.6781 | 0.5130 | 0.0391 | 0.045* | |
| H7B | 0.5141 | 0.3556 | 0.0321 | 0.045* | |
| C8 | 1.0095 (2) | 0.5470 (2) | 0.17322 (13) | 0.0359 (4) | |
| H8A | 1.1323 | 0.5666 | 0.2006 | 0.043* | |
| H8B | 1.0123 | 0.6287 | 0.1316 | 0.043* | |
| C9 | 0.4886 (3) | 0.3441 (2) | 0.22434 (14) | 0.0392 (4) | |
| C10 | 0.9584 (3) | 0.5307 (2) | 0.35329 (13) | 0.0395 (4) | |
| C11 | 0.7426 (2) | 0.5735 (2) | 0.24235 (12) | 0.0330 (4) | |
| C12 | 0.7751 (3) | 0.7358 (2) | 0.20982 (13) | 0.0372 (4) | |
| C13 | 0.9500 (4) | 1.0015 (3) | 0.2570 (2) | 0.0691 (7) | |
| H13A | 1.0481 | 1.0306 | 0.2168 | 0.083* | |
| H13B | 0.8494 | 1.0152 | 0.2195 | 0.083* | |
| C14 | 1.0045 (7) | 1.0966 (3) | 0.3520 (3) | 0.1181 (14) | |
| H14A | 0.9041 | 1.0729 | 0.3891 | 0.177* | |
| H14B | 1.0469 | 1.2031 | 0.3398 | 0.177* | |
| H14C | 1.0988 | 1.0774 | 0.3906 | 0.177* | |
| C15 | 0.6771 (3) | 0.5423 (2) | 0.34897 (13) | 0.0379 (4) | |
| C16 | 0.6154 (3) | 0.6578 (2) | 0.40178 (14) | 0.0412 (4) | |
| C17 | 0.4679 (4) | 0.8288 (3) | 0.3831 (2) | 0.0741 (8) | |
| H17A | 0.5609 | 0.9012 | 0.4335 | 0.089* | |
| H17B | 0.3639 | 0.7756 | 0.4160 | 0.089* | |
| C18 | 0.4201 (6) | 0.9114 (4) | 0.3022 (3) | 0.1120 (13) | |
| H18A | 0.5252 | 0.9687 | 0.2727 | 0.168* | |
| H18B | 0.3718 | 0.9808 | 0.3300 | 0.168* | |
| H18C | 0.3321 | 0.8386 | 0.2511 | 0.168* | |
| N1 | 0.6035 (2) | 0.45511 (17) | 0.17377 (10) | 0.0356 (4) | |
| N2 | 0.9101 (2) | 0.55255 (17) | 0.25637 (10) | 0.0345 (4) | |
| N3 | 0.5268 (3) | 0.3968 (2) | 0.32473 (13) | 0.0491 (4) | |
| H3A | 0.456 (3) | 0.355 (3) | 0.3683 (19) | 0.059* | |
| N4 | 0.8307 (3) | 0.5358 (2) | 0.40898 (13) | 0.0532 (5) | |
| H4A | 0.835 (3) | 0.525 (3) | 0.472 (2) | 0.064* | |
| O1 | 0.37312 (19) | 0.22369 (16) | 0.18597 (12) | 0.0528 (4) | |
| O2 | 1.0959 (2) | 0.51339 (19) | 0.38374 (10) | 0.0531 (4) | |
| O3 | 0.7018 (2) | 0.75960 (17) | 0.13482 (10) | 0.0552 (4) | |
| O4 | 0.8984 (2) | 0.84003 (15) | 0.27670 (11) | 0.0526 (4) | |
| O5 | 0.6376 (3) | 0.68292 (19) | 0.49151 (11) | 0.0644 (5) | |
| O6 | 0.5323 (2) | 0.71765 (18) | 0.33836 (11) | 0.0556 (4) |
| C1 | 0.0430 (10) | 0.0384 (9) | 0.0271 (8) | 0.0191 (8) | 0.0058 (7) | 0.0050 (7) |
| C2 | 0.0461 (11) | 0.0437 (10) | 0.0410 (10) | 0.0161 (9) | 0.0054 (8) | 0.0024 (8) |
| C3 | 0.0708 (15) | 0.0391 (11) | 0.0507 (12) | 0.0266 (11) | 0.0138 (11) | 0.0024 (9) |
| C4 | 0.0657 (15) | 0.0492 (12) | 0.0557 (12) | 0.0368 (11) | 0.0181 (11) | 0.0113 (10) |
| C5 | 0.0426 (11) | 0.0528 (11) | 0.0450 (10) | 0.0261 (10) | 0.0106 (9) | 0.0166 (9) |
| C6 | 0.0391 (10) | 0.0427 (10) | 0.0286 (8) | 0.0197 (8) | 0.0072 (7) | 0.0108 (7) |
| C7 | 0.0406 (10) | 0.0476 (10) | 0.0266 (8) | 0.0221 (9) | −0.0021 (7) | −0.0009 (7) |
| C8 | 0.0340 (10) | 0.0443 (10) | 0.0305 (9) | 0.0155 (8) | 0.0059 (7) | 0.0078 (7) |
| C9 | 0.0373 (10) | 0.0384 (10) | 0.0451 (10) | 0.0186 (9) | 0.0059 (8) | 0.0022 (8) |
| C10 | 0.0412 (11) | 0.0464 (10) | 0.0293 (9) | 0.0160 (9) | 0.0003 (8) | 0.0062 (8) |
| C11 | 0.0354 (10) | 0.0382 (9) | 0.0262 (8) | 0.0151 (8) | 0.0042 (7) | 0.0044 (7) |
| C12 | 0.0419 (10) | 0.0411 (10) | 0.0312 (9) | 0.0186 (9) | 0.0061 (8) | 0.0055 (7) |
| C13 | 0.0793 (18) | 0.0386 (12) | 0.0763 (17) | 0.0093 (12) | 0.0038 (14) | 0.0123 (11) |
| C14 | 0.170 (4) | 0.0489 (16) | 0.107 (3) | 0.019 (2) | 0.001 (3) | −0.0135 (16) |
| C15 | 0.0405 (10) | 0.0436 (10) | 0.0296 (9) | 0.0160 (9) | 0.0055 (7) | 0.0056 (7) |
| C16 | 0.0412 (11) | 0.0415 (10) | 0.0350 (10) | 0.0092 (9) | 0.0087 (8) | −0.0008 (8) |
| C17 | 0.0743 (18) | 0.0650 (16) | 0.096 (2) | 0.0388 (15) | 0.0268 (15) | −0.0014 (14) |
| C18 | 0.123 (3) | 0.088 (2) | 0.143 (3) | 0.070 (2) | −0.014 (3) | 0.001 (2) |
| N1 | 0.0346 (8) | 0.0415 (8) | 0.0296 (7) | 0.0153 (7) | 0.0002 (6) | 0.0005 (6) |
| N2 | 0.0339 (8) | 0.0433 (8) | 0.0263 (7) | 0.0155 (7) | 0.0013 (6) | 0.0051 (6) |
| N3 | 0.0571 (11) | 0.0412 (9) | 0.0423 (9) | 0.0088 (8) | 0.0185 (8) | 0.0041 (7) |
| N4 | 0.0579 (12) | 0.0867 (14) | 0.0265 (8) | 0.0393 (11) | 0.0068 (8) | 0.0152 (8) |
| O1 | 0.0427 (8) | 0.0437 (8) | 0.0624 (9) | 0.0079 (7) | 0.0054 (7) | −0.0045 (7) |
| O2 | 0.0493 (9) | 0.0791 (11) | 0.0373 (7) | 0.0323 (8) | 0.0003 (6) | 0.0148 (7) |
| O3 | 0.0773 (11) | 0.0517 (9) | 0.0407 (8) | 0.0328 (8) | −0.0054 (7) | 0.0069 (6) |
| O4 | 0.0588 (9) | 0.0372 (7) | 0.0505 (8) | 0.0091 (7) | −0.0048 (7) | 0.0069 (6) |
| O5 | 0.0891 (13) | 0.0677 (10) | 0.0367 (8) | 0.0307 (9) | 0.0136 (8) | −0.0042 (7) |
| O6 | 0.0633 (10) | 0.0630 (9) | 0.0520 (9) | 0.0378 (8) | 0.0095 (7) | 0.0002 (7) |
| C1—C2 | 1.390 (3) | C11—C12 | 1.548 (2) |
| C1—C6 | 1.401 (3) | C11—C15 | 1.577 (2) |
| C1—C7 | 1.513 (2) | C12—O3 | 1.188 (2) |
| C2—C3 | 1.386 (3) | C12—O4 | 1.317 (2) |
| C2—H2 | 0.9300 | C13—C14 | 1.437 (4) |
| C3—C4 | 1.375 (3) | C13—O4 | 1.466 (3) |
| C3—H3 | 0.9300 | C13—H13A | 0.9700 |
| C4—C5 | 1.382 (3) | C13—H13B | 0.9700 |
| C4—H4 | 0.9300 | C14—H14A | 0.9600 |
| C5—C6 | 1.387 (3) | C14—H14B | 0.9600 |
| C5—H5 | 0.9300 | C14—H14C | 0.9600 |
| C6—C8 | 1.508 (3) | C15—N4 | 1.437 (2) |
| C7—N1 | 1.466 (2) | C15—N3 | 1.441 (3) |
| C7—H7A | 0.9700 | C15—C16 | 1.531 (3) |
| C7—H7B | 0.9700 | C16—O5 | 1.190 (2) |
| C8—N2 | 1.451 (2) | C16—O6 | 1.311 (2) |
| C8—H8A | 0.9700 | C17—O6 | 1.466 (3) |
| C8—H8B | 0.9700 | C17—C18 | 1.471 (4) |
| C9—O1 | 1.208 (2) | C17—H17A | 0.9700 |
| C9—N3 | 1.365 (3) | C17—H17B | 0.9700 |
| C9—N1 | 1.376 (2) | C18—H18A | 0.9600 |
| C10—O2 | 1.223 (2) | C18—H18B | 0.9600 |
| C10—N4 | 1.354 (3) | C18—H18C | 0.9600 |
| C10—N2 | 1.363 (2) | N3—H3A | 0.87 (3) |
| C11—N1 | 1.440 (2) | N4—H4A | 0.85 (3) |
| C11—N2 | 1.445 (2) | ||
| C2—C1—C6 | 119.23 (17) | C14—C13—H13A | 109.9 |
| C2—C1—C7 | 119.00 (17) | O4—C13—H13A | 109.9 |
| C6—C1—C7 | 121.69 (16) | C14—C13—H13B | 109.9 |
| C3—C2—C1 | 121.0 (2) | O4—C13—H13B | 109.9 |
| C3—C2—H2 | 119.5 | H13A—C13—H13B | 108.3 |
| C1—C2—H2 | 119.5 | C13—C14—H14A | 109.5 |
| C4—C3—C2 | 119.5 (2) | C13—C14—H14B | 109.5 |
| C4—C3—H3 | 120.3 | H14A—C14—H14B | 109.5 |
| C2—C3—H3 | 120.3 | C13—C14—H14C | 109.5 |
| C3—C4—C5 | 120.1 (2) | H14A—C14—H14C | 109.5 |
| C3—C4—H4 | 120.0 | H14B—C14—H14C | 109.5 |
| C5—C4—H4 | 120.0 | N4—C15—N3 | 114.94 (17) |
| C4—C5—C6 | 121.16 (19) | N4—C15—C16 | 110.13 (16) |
| C4—C5—H5 | 119.4 | N3—C15—C16 | 109.09 (16) |
| C6—C5—H5 | 119.4 | N4—C15—C11 | 102.62 (15) |
| C5—C6—C1 | 118.94 (18) | N3—C15—C11 | 101.34 (14) |
| C5—C6—C8 | 119.12 (17) | C16—C15—C11 | 118.67 (15) |
| C1—C6—C8 | 121.91 (16) | O5—C16—O6 | 125.5 (2) |
| N1—C7—C1 | 115.68 (14) | O5—C16—C15 | 121.54 (18) |
| N1—C7—H7A | 108.4 | O6—C16—C15 | 112.92 (15) |
| C1—C7—H7A | 108.4 | O6—C17—C18 | 108.6 (3) |
| N1—C7—H7B | 108.4 | O6—C17—H17A | 110.0 |
| C1—C7—H7B | 108.4 | C18—C17—H17A | 110.0 |
| H7A—C7—H7B | 107.4 | O6—C17—H17B | 110.0 |
| N2—C8—C6 | 113.76 (15) | C18—C17—H17B | 110.0 |
| N2—C8—H8A | 108.8 | H17A—C17—H17B | 108.3 |
| C6—C8—H8A | 108.8 | C17—C18—H18A | 109.5 |
| N2—C8—H8B | 108.8 | C17—C18—H18B | 109.5 |
| C6—C8—H8B | 108.8 | H18A—C18—H18B | 109.5 |
| H8A—C8—H8B | 107.7 | C17—C18—H18C | 109.5 |
| O1—C9—N3 | 126.68 (18) | H18A—C18—H18C | 109.5 |
| O1—C9—N1 | 125.85 (18) | H18B—C18—H18C | 109.5 |
| N3—C9—N1 | 107.45 (16) | C9—N1—C11 | 111.93 (14) |
| O2—C10—N4 | 126.78 (16) | C9—N1—C7 | 120.52 (15) |
| O2—C10—N2 | 125.11 (18) | C11—N1—C7 | 121.64 (15) |
| N4—C10—N2 | 108.09 (16) | C10—N2—C11 | 113.25 (15) |
| N1—C11—N2 | 113.91 (14) | C10—N2—C8 | 124.21 (15) |
| N1—C11—C12 | 111.49 (13) | C11—N2—C8 | 122.46 (13) |
| N2—C11—C12 | 109.92 (14) | C9—N3—C15 | 114.32 (16) |
| N1—C11—C15 | 103.63 (14) | C9—N3—H3A | 122.6 (16) |
| N2—C11—C15 | 101.80 (13) | C15—N3—H3A | 122.3 (16) |
| C12—C11—C15 | 115.76 (14) | C10—N4—C15 | 113.12 (15) |
| O3—C12—O4 | 126.43 (17) | C10—N4—H4A | 123.5 (17) |
| O3—C12—C11 | 124.36 (17) | C15—N4—H4A | 123.0 (17) |
| O4—C12—C11 | 109.19 (14) | C12—O4—C13 | 116.92 (16) |
| C14—C13—O4 | 108.9 (2) | C16—O6—C17 | 116.28 (18) |
| C6—C1—C2—C3 | −1.4 (3) | O1—C9—N1—C7 | −17.8 (3) |
| C7—C1—C2—C3 | 175.22 (17) | N3—C9—N1—C7 | 163.56 (16) |
| C1—C2—C3—C4 | 0.2 (3) | N2—C11—N1—C9 | 97.72 (17) |
| C2—C3—C4—C5 | 1.3 (3) | C12—C11—N1—C9 | −137.17 (15) |
| C3—C4—C5—C6 | −1.5 (3) | C15—C11—N1—C9 | −12.01 (18) |
| C4—C5—C6—C1 | 0.3 (3) | N2—C11—N1—C7 | −55.3 (2) |
| C4—C5—C6—C8 | −177.86 (17) | C12—C11—N1—C7 | 69.8 (2) |
| C2—C1—C6—C5 | 1.2 (2) | C15—C11—N1—C7 | −165.00 (14) |
| C7—C1—C6—C5 | −175.36 (16) | C1—C7—N1—C9 | −78.3 (2) |
| C2—C1—C6—C8 | 179.26 (16) | C1—C7—N1—C11 | 72.4 (2) |
| C7—C1—C6—C8 | 2.7 (2) | O2—C10—N2—C11 | −178.59 (18) |
| C2—C1—C7—N1 | 124.69 (18) | N4—C10—N2—C11 | −0.2 (2) |
| C6—C1—C7—N1 | −58.8 (2) | O2—C10—N2—C8 | 4.8 (3) |
| C5—C6—C8—N2 | −126.25 (17) | N4—C10—N2—C8 | −176.82 (17) |
| C1—C6—C8—N2 | 55.7 (2) | N1—C11—N2—C10 | −116.92 (17) |
| N1—C11—C12—O3 | −3.8 (3) | C12—C11—N2—C10 | 117.15 (16) |
| N2—C11—C12—O3 | 123.5 (2) | C15—C11—N2—C10 | −6.07 (19) |
| C15—C11—C12—O3 | −121.9 (2) | N1—C11—N2—C8 | 59.8 (2) |
| N1—C11—C12—O4 | 177.71 (15) | C12—C11—N2—C8 | −66.1 (2) |
| N2—C11—C12—O4 | −55.00 (19) | C15—C11—N2—C8 | 170.64 (15) |
| C15—C11—C12—O4 | 59.6 (2) | C6—C8—N2—C10 | 99.2 (2) |
| N1—C11—C15—N4 | 127.94 (15) | C6—C8—N2—C11 | −77.2 (2) |
| N2—C11—C15—N4 | 9.48 (18) | O1—C9—N3—C15 | 177.73 (18) |
| C12—C11—C15—N4 | −109.69 (17) | N1—C9—N3—C15 | −3.7 (2) |
| N1—C11—C15—N3 | 8.88 (17) | N4—C15—N3—C9 | −113.33 (19) |
| N2—C11—C15—N3 | −109.58 (15) | C16—C15—N3—C9 | 122.44 (18) |
| C12—C11—C15—N3 | 131.26 (16) | C11—C15—N3—C9 | −3.5 (2) |
| N1—C11—C15—C16 | −110.44 (17) | O2—C10—N4—C15 | −174.2 (2) |
| N2—C11—C15—C16 | 131.09 (17) | N2—C10—N4—C15 | 7.4 (2) |
| C12—C11—C15—C16 | 11.9 (2) | N3—C15—N4—C10 | 98.4 (2) |
| N4—C15—C16—O5 | −29.5 (3) | C16—C15—N4—C10 | −137.96 (18) |
| N3—C15—C16—O5 | 97.5 (2) | C11—C15—N4—C10 | −10.7 (2) |
| C11—C15—C16—O5 | −147.25 (19) | O3—C12—O4—C13 | 0.2 (3) |
| N4—C15—C16—O6 | 153.07 (17) | C11—C12—O4—C13 | 178.62 (19) |
| N3—C15—C16—O6 | −79.91 (19) | C14—C13—O4—C12 | 150.2 (3) |
| C11—C15—C16—O6 | 35.3 (2) | O5—C16—O6—C17 | 2.3 (3) |
| O1—C9—N1—C11 | −171.16 (18) | C15—C16—O6—C17 | 179.63 (19) |
| N3—C9—N1—C11 | 10.2 (2) | C18—C17—O6—C16 | 166.1 (2) |
| H··· | ||||
| C7—H7A···O3 | 0.97 | 2.52 | 3.107 (2) | 119 |
| C17—H17B···O2i | 0.97 | 2.58 | 3.343 (3) | 136 |
| C7—H7B···O3ii | 0.97 | 2.59 | 3.478 (2) | 153 |
| N4—H4A···O2iii | 0.85 (3) | 2.05 (3) | 2.871 (2) | 165 (2) |
| N3—H3A···O5iv | 0.87 (3) | 2.09 (3) | 2.917 (2) | 159 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C7—H7 | 0.97 | 2.52 | 3.107 (2) | 119 |
| C17—H17 | 0.97 | 2.58 | 3.343 (3) | 136 |
| C7—H7 | 0.97 | 2.59 | 3.478 (2) | 153 |
| N4—H4 | 0.85 (3) | 2.05 (3) | 2.871 (2) | 165 (2) |
| N3—H3 | 0.87 (3) | 2.09 (3) | 2.917 (2) | 159 (2) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .