Literature DB >> 21583896

1-Carboxy-methyl-2-ethyl-4-methyl-1H-imidazol-3-ium chloride monohydrate.

Chuan-Qing Chen, Shi-Neng Luo, Jian-Guo Lin, Ling Qiu, Yong-Mei Xia.   

Abstract

In the title compound, C(8)H(13)N(2)O(2) (+)·Cl(-)·H(2)O, the methyl C atom of the ethyl group is slightly out of the n class="Chemical">imidazole plane, with an N-C(ring)-C-C torsion angle of -15.1 (2)°. In the crystal structure, there are strong inter-molecular hydrogen-bonding inter-actions between the solvent water mol-ecule, the free chloride anion and the organic cation, resulting in a two-dimensional supra-molecular network in the ab plane.

Entities:  

Year:  2009        PMID: 21583896      PMCID: PMC2977760          DOI: 10.1107/S1600536809013403

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound is a vital intermediate in the synthesis of bisphosphonic acid, i.e. n class="Chemical">2-(2-ethyl-4-methyl-1H-imidazol-1-yl)-1-hydroxyethane-1,1-diyldiphosphonic acid; for a general background on bis­phospho­nates, see: Dawson (2003 ▶); Vasireddy et al. (2003 ▶). For related structures, see: Gao et al. (2004 ▶); Barczynski et al. (2008 ▶). For the synthesis, see: Zederenko et al. (1994 ▶).

Experimental

Crystal data

C8H13N2O2 +·Cl−·n class="Chemical">H2O M = 222.67 Monoclinic, a = 11.077 (2) Å b = 8.4542 (18) Å c = 11.938 (3) Å β = 90.265 (3)° V = 1117.9 (4) Å3 Z = 4 Mo Kα radiation μ = 0.33 mm−1 T = 93 K 0.40 × 0.40 × 0.35 mm

Data collection

Rigaku SPIDER diffractometer Absorption correction: multi-scan (RAPID-AUTO; Rigaku, 2004 ▶) T min = 0.880, T max = 0.894 8869 measured reflections 2532 independent reflections 2203 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.099 S = 1.00 2532 reflections 145 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.29 e Å−3 Δρmin = −0.20 e Å−3 Data collection: RAPID-AUTO (Rigaku, 2004 ▶); cell refinement: RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809013403/fj2205sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809013403/fj2205Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H13N2O2+·Cl·H2OF(000) = 472
Mr = 222.67Dx = 1.323 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3544 reflections
a = 11.077 (2) Åθ = 3.0–27.5°
b = 8.4542 (18) ŵ = 0.33 mm1
c = 11.938 (3) ÅT = 93 K
β = 90.265 (3)°Block, colorless
V = 1117.9 (4) Å30.40 × 0.40 × 0.35 mm
Z = 4
Rigaku SPIDER diffractometer2532 independent reflections
Radiation source: Rotating Anode2203 reflections with I > 2σ(I)
graphiteRint = 0.031
ω scansθmax = 27.5°, θmin = 3.0°
Absorption correction: multi-scan (RAPID-AUTO; Rigaku, 2004)h = −13→14
Tmin = 0.880, Tmax = 0.894k = −10→10
8869 measured reflectionsl = −15→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.099H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0582P)2 + 0.06P] where P = (Fo2 + 2Fc2)/3
2532 reflections(Δ/σ)max < 0.001
145 parametersΔρmax = 0.29 e Å3
1 restraintΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.19761 (3)0.57092 (4)0.31835 (3)0.02509 (14)
O10.88525 (10)0.95264 (13)0.14174 (10)0.0295 (3)
O20.79630 (9)0.72040 (13)0.17923 (9)0.0273 (3)
O30.40590 (10)0.32662 (16)0.33959 (12)0.0382 (3)
N10.42391 (11)0.70595 (14)0.18900 (10)0.0184 (3)
N20.57147 (10)0.84373 (14)0.12622 (10)0.0184 (3)
C10.42085 (12)0.68984 (18)0.07348 (12)0.0210 (3)
C20.51409 (12)0.77535 (17)0.03442 (12)0.0211 (3)
H20.53660.7869−0.04180.025*
C30.51465 (12)0.79974 (16)0.21927 (12)0.0178 (3)
C40.32597 (14)0.5958 (2)0.01537 (14)0.0292 (4)
H4A0.34260.5934−0.06520.035*
H4B0.24690.64450.02810.035*
H4C0.32580.48770.04490.035*
C50.54916 (13)0.84647 (19)0.33464 (12)0.0234 (3)
H5A0.56770.96100.33550.028*
H5B0.62360.78910.35620.028*
C60.45261 (15)0.8131 (2)0.42068 (13)0.0304 (4)
H6A0.37890.87100.40080.037*
H6B0.48090.84730.49470.037*
H6C0.43550.69940.42220.037*
C70.67760 (12)0.94450 (17)0.12097 (12)0.0202 (3)
H7A0.66721.03450.17310.024*
H7B0.68490.98790.04430.024*
C80.79233 (12)0.85727 (18)0.15091 (12)0.0205 (3)
H1N0.3693 (15)0.667 (2)0.2348 (14)0.027 (4)*
H1O0.961 (2)0.900 (3)0.1558 (18)0.060 (7)*
H3A0.344 (2)0.397 (3)0.336 (2)0.077 (8)*
H3B0.385 (2)0.243 (3)0.289 (2)0.067 (7)*
U11U22U33U12U13U23
Cl10.0190 (2)0.0276 (2)0.0287 (2)−0.00309 (14)0.00545 (15)−0.00028 (14)
O10.0168 (5)0.0245 (6)0.0472 (7)−0.0020 (5)0.0009 (5)0.0008 (5)
O20.0199 (5)0.0236 (6)0.0384 (6)0.0035 (4)0.0019 (5)0.0087 (5)
O30.0206 (6)0.0333 (7)0.0605 (9)0.0012 (5)−0.0053 (6)−0.0059 (6)
N10.0141 (6)0.0215 (6)0.0196 (6)−0.0007 (5)0.0018 (5)−0.0005 (5)
N20.0139 (6)0.0212 (6)0.0202 (6)0.0015 (5)0.0002 (5)0.0007 (5)
C10.0162 (7)0.0250 (8)0.0220 (7)0.0033 (6)−0.0002 (6)−0.0028 (6)
C20.0178 (7)0.0276 (8)0.0178 (7)0.0040 (6)0.0004 (5)−0.0008 (6)
C30.0139 (6)0.0179 (7)0.0217 (7)0.0029 (5)0.0018 (5)−0.0005 (5)
C40.0202 (8)0.0392 (10)0.0281 (8)−0.0016 (7)−0.0013 (6)−0.0088 (7)
C50.0236 (8)0.0269 (8)0.0197 (7)−0.0040 (6)−0.0004 (6)−0.0027 (6)
C60.0303 (9)0.0381 (10)0.0229 (8)−0.0054 (7)0.0031 (7)−0.0040 (7)
C70.0165 (7)0.0195 (7)0.0247 (7)−0.0007 (6)0.0021 (6)0.0018 (5)
C80.0173 (7)0.0232 (8)0.0211 (7)−0.0001 (6)0.0021 (6)−0.0003 (6)
O1—C81.3125 (18)C3—C51.481 (2)
O1—H1O0.96 (2)C4—H4A0.9800
O2—C81.2063 (18)C4—H4B0.9800
O3—H3A0.91 (2)C4—H4C0.9800
O3—H3B0.96 (2)C5—C61.513 (2)
N1—C31.3290 (18)C5—H5A0.9900
N1—C11.3860 (18)C5—H5B0.9900
N1—H1N0.881 (17)C6—H6A0.9800
N2—C31.3322 (18)C6—H6B0.9800
N2—C21.3903 (18)C6—H6C0.9800
N2—C71.4534 (18)C7—C81.5109 (19)
C1—C21.346 (2)C7—H7A0.9900
C1—C41.487 (2)C7—H7B0.9900
C2—H20.9500
C8—O1—H1O112.3 (13)H4B—C4—H4C109.5
H3A—O3—H3B106.1 (16)C3—C5—C6113.66 (12)
C3—N1—C1110.13 (12)C3—C5—H5A108.8
C3—N1—H1N125.1 (11)C6—C5—H5A108.8
C1—N1—H1N124.5 (11)C3—C5—H5B108.8
C3—N2—C2108.97 (12)C6—C5—H5B108.8
C3—N2—C7125.80 (12)H5A—C5—H5B107.7
C2—N2—C7125.22 (12)C5—C6—H6A109.5
C2—C1—N1106.06 (12)C5—C6—H6B109.5
C2—C1—C4131.87 (14)H6A—C6—H6B109.5
N1—C1—C4122.06 (13)C5—C6—H6C109.5
C1—C2—N2107.40 (13)H6A—C6—H6C109.5
C1—C2—H2126.3H6B—C6—H6C109.5
N2—C2—H2126.3N2—C7—C8112.54 (12)
N1—C3—N2107.43 (12)N2—C7—H7A109.1
N1—C3—C5127.13 (13)C8—C7—H7A109.1
N2—C3—C5125.44 (13)N2—C7—H7B109.1
C1—C4—H4A109.5C8—C7—H7B109.1
C1—C4—H4B109.5H7A—C7—H7B107.8
H4A—C4—H4B109.5O2—C8—O1125.81 (14)
C1—C4—H4C109.5O2—C8—C7124.34 (13)
H4A—C4—H4C109.5O1—C8—C7109.85 (13)
C3—N1—C1—C20.88 (16)C7—N2—C3—N1−178.83 (12)
C3—N1—C1—C4−177.84 (13)C2—N2—C3—C5179.31 (13)
N1—C1—C2—N2−0.76 (16)C7—N2—C3—C50.3 (2)
C4—C1—C2—N2177.78 (15)N1—C3—C5—C6−15.1 (2)
C3—N2—C2—C10.40 (16)N2—C3—C5—C6165.88 (14)
C7—N2—C2—C1179.39 (13)C3—N2—C7—C877.86 (17)
C1—N1—C3—N2−0.63 (16)C2—N2—C7—C8−100.96 (15)
C1—N1—C3—C5−179.78 (14)N2—C7—C8—O2−2.0 (2)
C2—N2—C3—N10.14 (15)N2—C7—C8—O1178.25 (12)
D—H···AD—HH···AD···AD—H···A
N1—H1N···Cl10.881 (17)2.300 (18)3.1635 (14)166.6 (15)
O3—H3A···Cl10.91 (2)2.20 (2)3.1062 (14)177 (2)
O1—H1O···O3i0.96 (2)1.60 (2)2.5557 (16)170 (2)
O3—H3B···Cl1ii0.96 (2)2.14 (2)3.0860 (14)168 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯Cl10.881 (17)2.300 (18)3.1635 (14)166.6 (15)
O3—H3A⋯Cl10.91 (2)2.20 (2)3.1062 (14)177 (2)
O1—H1O⋯O3i0.96 (2)1.60 (2)2.5557 (16)170 (2)
O3—H3B⋯Cl1ii0.96 (2)2.14 (2)3.0860 (14)168.2 (19)

Symmetry codes: (i) ; (ii) .

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