Literature DB >> 21583887

4-{[3-(4-Hydroxy-benzyl-ideneamino)-2,2-dimethyl-propyl]iminiomethyl}phenolate dihydrate.

Reza Kia, Hoong-Kun Fun, Hadi Kargar.   

Abstract

The asymmetric unit of the title compound, C(19)H(22)N(2)O(2)·2H(2)O, comprises a zwitterionic form of the Schiff base compound and two water mol-ecules of crystallization. Inter-molecular N-H⋯O, C-H⋯O and O-H⋯N hydrogen bonds involving one of the water mol-ecules in the asymmetric unit generate seven- and eight-membered rings, with R(2) (1)(7) and R(2) (2)(8) ring motifs, respectively. The dihedral angle beween the two aromatic rings is 86.5 (2)°. The imino and iminium groups are coplanar with the benzene rings to which they are attached, making dihedral angles (N-C-C-C) of -179.3 (5) and -179.2 (4)°, respectively. Validation software indicates the higher symmetry space group Pnma for this structure. However, this process ignores H atoms and the zwitterionic configuration of the main mol-ecule breaks the higher symmetry. Solution in Pna2(1) provides a chemically sensible zwitterionic compound with improved residuals. In the crystal structure, mol-ecules are linked together through inter-molecular O-H⋯O, O-H⋯N, N-H⋯O and C-H⋯O inter-actions, forming a three-dimensional network. The crystal structure is further stabilized by inter-molecular C-H⋯π inter-actions.

Entities:  

Year:  2009        PMID: 21583887      PMCID: PMC2977751          DOI: 10.1107/S1600536809013804

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For information on Schiff base ligands and their complexes and applications, see: Calligaris & Randaccio (1987 ▶); Li et al. (2005 ▶); Bomfim et al. (2005 ▶); Glidewell et al. (2005 ▶, 2006 ▶); Sun et al. (2004 ▶). For details of the synthesis, see: Fun et al. (2008 ▶). For the stability of the temperature controller used for data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C19H22N2O2·2H2O M = 346.42 Orthorhombic, a = 13.0336 (4) Å b = 11.5242 (3) Å c = 12.4132 (4) Å V = 1864.49 (10) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.34 × 0.21 × 0.11 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.971, T max = 0.991 10183 measured reflections 2237 independent reflections 1753 reflections with I > 2σ(I) R int = 0.056

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.116 S = 1.05 2237 reflections 235 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.27 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2005 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809013804/sj2615sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809013804/sj2615Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H22N2O2·2H2OF(000) = 744
Mr = 346.42Dx = 1.234 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 1477 reflections
a = 13.0336 (4) Åθ = 2.4–29.9°
b = 11.5242 (3) ŵ = 0.09 mm1
c = 12.4132 (4) ÅT = 100 K
V = 1864.49 (10) Å3Block, orange
Z = 40.34 × 0.21 × 0.11 mm
Bruker SMART APEXII CCD area-detector diffractometer2237 independent reflections
Radiation source: fine-focus sealed tube1753 reflections with I > 2σ(I)
graphiteRint = 0.056
φ and ω scansθmax = 27.5°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −15→16
Tmin = 0.971, Tmax = 0.991k = −14→14
10183 measured reflectionsl = −16→7
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0526P)2 + 0.5548P] where P = (Fo2 + 2Fc2)/3
2237 reflections(Δ/σ)max < 0.001
235 parametersΔρmax = 0.27 e Å3
3 restraintsΔρmin = −0.20 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.0498 (3)0.5696 (3)1.0250 (3)0.0254 (8)
O20.0475 (3)0.5792 (3)0.4102 (2)0.0217 (7)
N10.5104 (3)0.5803 (3)0.8323 (3)0.0192 (8)
N20.5136 (3)0.5842 (3)0.5796 (3)0.0186 (8)
C10.2946 (4)0.5328 (4)0.8831 (4)0.0181 (10)
H1A0.32250.48950.82700.022*
C20.1925 (4)0.5165 (4)0.9112 (4)0.0178 (10)
H2A0.15280.46270.87410.021*
C30.1496 (4)0.5802 (4)0.9947 (4)0.0184 (10)
C40.2104 (4)0.6615 (4)1.0498 (4)0.0221 (10)
H4A0.18280.70501.10590.026*
C50.3115 (4)0.6764 (4)1.0197 (4)0.0211 (10)
H5A0.35100.73101.05600.025*
C60.3563 (4)0.6130 (4)0.9374 (4)0.0181 (10)
C70.4645 (4)0.6339 (4)0.9073 (4)0.0186 (10)
H7A0.50100.68960.94570.022*
C80.6178 (4)0.6143 (4)0.8131 (4)0.0172 (9)
H8A0.65940.54470.80920.021*
H8B0.64160.65930.87420.021*
C90.63477 (18)0.6854 (2)0.7101 (5)0.0166 (5)
C100.6196 (4)0.6143 (4)0.6059 (4)0.0207 (10)
H10A0.64810.65800.54630.025*
H10B0.65880.54310.61220.025*
C110.4577 (4)0.6396 (3)0.5096 (3)0.0173 (9)
H11A0.48910.70090.47370.021*
C120.3548 (4)0.6168 (4)0.4823 (4)0.0160 (9)
C130.3087 (4)0.6874 (4)0.4023 (4)0.0186 (10)
H13A0.34760.74320.36680.022*
C140.2061 (4)0.6736 (4)0.3767 (4)0.0183 (9)
H14A0.17680.72060.32410.022*
C150.1448 (4)0.5894 (4)0.4291 (4)0.0172 (9)
C160.1949 (4)0.5154 (3)0.5056 (4)0.0182 (10)
H16A0.15740.45640.53820.022*
C170.2949 (4)0.5287 (3)0.5318 (4)0.0181 (10)
H17A0.32460.47980.58260.022*
C180.56782 (19)0.7944 (2)0.7087 (5)0.0209 (6)
H18A0.57700.83640.77480.031*
H18B0.49710.77250.70140.031*
H18C0.58730.84260.64910.031*
C190.74958 (18)0.7180 (2)0.7099 (6)0.0230 (6)
H19A0.76590.75900.77500.034*
H19B0.76400.76660.64900.034*
H19C0.79030.64870.70570.034*
O1W0.02979 (14)0.33777 (16)0.7189 (3)0.0223 (5)
H1W10.00210.37540.65920.033*
H2W10.00120.37130.77310.033*
O2W0.45692 (15)0.38775 (16)0.7030 (3)0.0247 (5)
H1W20.49220.32790.69160.037*
H2W20.47350.40560.76810.037*
H1N20.487 (3)0.520 (3)0.618 (3)0.020 (9)*
H1O10.020 (3)0.524 (4)0.984 (4)0.040 (14)*
U11U22U33U12U13U23
O10.0152 (16)0.0329 (16)0.0281 (17)−0.0051 (14)0.0031 (13)−0.0086 (14)
O20.0171 (16)0.0261 (15)0.0219 (16)−0.0001 (13)−0.0042 (13)0.0062 (12)
N10.020 (2)0.0172 (18)0.0207 (18)−0.0025 (17)0.0044 (15)0.0045 (16)
N20.0145 (19)0.0181 (18)0.0231 (19)−0.0025 (16)0.0018 (15)−0.0003 (15)
C10.019 (2)0.019 (2)0.016 (2)0.001 (2)0.0061 (19)0.0063 (18)
C20.018 (3)0.020 (2)0.015 (2)−0.0032 (19)−0.0010 (19)0.0004 (17)
C30.012 (2)0.0189 (19)0.025 (2)−0.0004 (17)0.0006 (17)0.0025 (18)
C40.022 (2)0.0227 (19)0.022 (2)0.0024 (19)0.0011 (19)−0.0022 (18)
C50.026 (3)0.0182 (18)0.019 (2)−0.0060 (19)−0.004 (2)0.0028 (18)
C60.021 (2)0.0139 (18)0.019 (2)0.0006 (19)0.0014 (18)0.0042 (19)
C70.0090 (19)0.024 (2)0.023 (2)−0.0051 (17)−0.0087 (18)0.0076 (18)
C80.010 (2)0.017 (2)0.025 (2)0.0022 (19)−0.0017 (18)0.004 (2)
C90.0150 (11)0.0190 (11)0.0157 (13)−0.0035 (10)0.002 (2)−0.004 (2)
C100.021 (2)0.025 (2)0.016 (2)−0.004 (2)−0.0033 (19)0.000 (2)
C110.029 (2)0.0100 (16)0.013 (2)0.0029 (18)−0.0015 (18)−0.0009 (15)
C120.012 (2)0.0166 (18)0.020 (2)0.0025 (18)0.0026 (17)−0.0080 (19)
C130.018 (2)0.0142 (17)0.024 (2)−0.0012 (17)0.0025 (19)0.0039 (17)
C140.023 (2)0.0161 (18)0.016 (2)0.0023 (18)0.0008 (19)0.0027 (17)
C150.021 (2)0.0144 (16)0.017 (2)0.0029 (18)−0.0014 (18)−0.0027 (17)
C160.018 (3)0.0117 (18)0.025 (3)0.0003 (18)0.0044 (19)0.0002 (18)
C170.021 (2)0.0116 (17)0.022 (2)0.0041 (18)0.0054 (19)0.0051 (18)
C180.0220 (12)0.0170 (12)0.0238 (15)−0.0011 (10)−0.001 (3)−0.006 (2)
C190.0181 (12)0.0244 (13)0.0265 (16)−0.0061 (11)0.002 (3)0.001 (3)
O1W0.0244 (10)0.0209 (9)0.0216 (13)0.0046 (8)−0.0003 (16)−0.0010 (13)
O2W0.0286 (11)0.0201 (9)0.0255 (14)0.0002 (8)−0.0010 (18)−0.0041 (16)
O1—C31.359 (6)C9—C101.543 (7)
O1—H1O10.83 (4)C10—H10A0.9700
O2—C151.295 (6)C10—H10B0.9700
N1—C71.267 (6)C11—C121.407 (7)
N1—C81.473 (6)C11—H11A0.9300
N2—C111.302 (6)C12—C131.418 (6)
N2—C101.461 (6)C12—C171.421 (6)
N2—H1N20.95 (4)C13—C141.384 (8)
C1—C21.388 (7)C13—H13A0.9300
C1—C61.398 (7)C14—C151.415 (7)
C1—H1A0.9300C14—H14A0.9300
C2—C31.387 (6)C15—C161.434 (6)
C2—H2A0.9300C16—C171.352 (7)
C3—C41.405 (7)C16—H16A0.9300
C4—C51.380 (8)C17—H17A0.9300
C4—H4A0.9300C18—H18A0.9600
C5—C61.385 (7)C18—H18B0.9600
C5—H5A0.9300C18—H18C0.9600
C6—C71.480 (6)C19—H19A0.9600
C7—H7A0.9300C19—H19B0.9600
C8—C91.535 (7)C19—H19C0.9600
C8—H8A0.9700O1W—H1W10.9309
C8—H8B0.9700O1W—H2W10.8614
C9—C181.529 (3)O2W—H1W20.8404
C9—C191.543 (3)O2W—H2W20.8612
C3—O1—H1O1110 (4)C9—C10—H10A108.3
C7—N1—C8115.9 (4)N2—C10—H10B108.3
C11—N2—C10124.2 (4)C9—C10—H10B108.3
C11—N2—H1N2121 (2)H10A—C10—H10B107.4
C10—N2—H1N2115 (2)N2—C11—C12127.0 (4)
C2—C1—C6121.3 (4)N2—C11—H11A116.5
C2—C1—H1A119.4C12—C11—H11A116.5
C6—C1—H1A119.4C11—C12—C13117.7 (4)
C3—C2—C1120.2 (4)C11—C12—C17123.6 (4)
C3—C2—H2A119.9C13—C12—C17118.7 (4)
C1—C2—H2A119.9C14—C13—C12120.3 (4)
O1—C3—C2123.0 (4)C14—C13—H13A119.8
O1—C3—C4117.7 (4)C12—C13—H13A119.8
C2—C3—C4119.3 (4)C13—C14—C15121.3 (4)
C5—C4—C3119.3 (5)C13—C14—H14A119.4
C5—C4—H4A120.3C15—C14—H14A119.4
C3—C4—H4A120.3O2—C15—C14122.1 (4)
C4—C5—C6122.4 (4)O2—C15—C16120.8 (4)
C4—C5—H5A118.8C14—C15—C16117.1 (4)
C6—C5—H5A118.8C17—C16—C15122.0 (4)
C5—C6—C1117.5 (4)C17—C16—H16A119.0
C5—C6—C7120.1 (4)C15—C16—H16A119.0
C1—C6—C7122.3 (4)C16—C17—C12120.5 (4)
N1—C7—C6123.8 (4)C16—C17—H17A119.8
N1—C7—H7A118.1C12—C17—H17A119.8
C6—C7—H7A118.1C9—C18—H18A109.5
N1—C8—C9114.5 (3)C9—C18—H18B109.5
N1—C8—H8A108.6H18A—C18—H18B109.5
C9—C8—H8A108.6C9—C18—H18C109.5
N1—C8—H8B108.6H18A—C18—H18C109.5
C9—C8—H8B108.6H18B—C18—H18C109.5
H8A—C8—H8B107.6C9—C19—H19A109.5
C18—C9—C8111.4 (4)C9—C19—H19B109.5
C18—C9—C19110.7 (2)H19A—C19—H19B109.5
C8—C9—C19105.7 (4)C9—C19—H19C109.5
C18—C9—C10110.7 (4)H19A—C19—H19C109.5
C8—C9—C10113.3 (2)H19B—C19—H19C109.5
C19—C9—C10104.6 (4)H1W1—O1W—H2W1104.2
N2—C10—C9115.8 (4)H1W2—O2W—H2W2102.5
N2—C10—H10A108.3
C6—C1—C2—C3−0.1 (7)C11—N2—C10—C999.7 (5)
C1—C2—C3—O1178.9 (4)C18—C9—C10—N2−53.5 (5)
C1—C2—C3—C40.4 (7)C8—C9—C10—N272.5 (4)
O1—C3—C4—C5−178.6 (4)C19—C9—C10—N2−172.8 (4)
C2—C3—C4—C50.0 (7)C10—N2—C11—C12−178.4 (4)
C3—C4—C5—C6−0.7 (7)N2—C11—C12—C13−179.2 (4)
C4—C5—C6—C10.9 (7)N2—C11—C12—C171.9 (7)
C4—C5—C6—C7179.0 (4)C11—C12—C13—C14−176.2 (4)
C2—C1—C6—C5−0.6 (7)C17—C12—C13—C142.8 (7)
C2—C1—C6—C7−178.6 (4)C12—C13—C14—C15−0.1 (7)
C8—N1—C7—C6179.1 (4)C13—C14—C15—O2176.4 (4)
C5—C6—C7—N1−179.3 (4)C13—C14—C15—C16−3.1 (7)
C1—C6—C7—N1−1.3 (7)O2—C15—C16—C17−175.9 (5)
C7—N1—C8—C9−106.9 (4)C14—C15—C16—C173.6 (7)
N1—C8—C9—C1856.0 (4)C15—C16—C17—C12−1.0 (7)
N1—C8—C9—C19176.4 (4)C11—C12—C17—C16176.6 (4)
N1—C8—C9—C10−69.6 (4)C13—C12—C17—C16−2.3 (7)
D—H···AD—HH···AD···AD—H···A
O1W—H1W1···O1i0.931.912.830 (5)171
O1W—H2W1···O2ii0.861.902.751 (4)168
O2W—H1W2···O1Wiii0.842.002.774 (3)153
O2W—H2W2···N10.862.222.826 (4)127
N2—H1N2···O2W0.95 (4)1.90 (4)2.832 (4)170 (3)
O1—H1O1···O2ii0.83 (4)1.74 (5)2.565 (5)174 (5)
C17—H17A···O2W0.932.523.408 (6)161
C10—H10B···Cg1iv0.972.693.422 (5)133
C8—H8A···Cg2v0.972.743.497 (5)136
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C1–C6 and C12–C17 benzene rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1W1⋯O1i0.931.912.830 (5)171
O1W—H2W1⋯O2ii0.861.902.751 (4)168
O2W—H1W2⋯O1Wiii0.842.002.774 (3)153
O2W—H2W2⋯N10.862.222.826 (4)127
N2—H1N2⋯O2W0.95 (4)1.90 (4)2.832 (4)170 (3)
O1—H1O1⋯O2ii0.83 (4)1.74 (5)2.565 (5)174 (5)
C17—H17A⋯O2W0.932.523.408 (6)161
C10—H10BCg1iv0.972.693.422 (5)133
C8—H8ACg2v0.972.743.497 (5)136

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  5 in total

1.  Three-dimensional supramolecular structures in (E,E)-N,N'-bis(4-nitrobenzylidene)butane-1,4-diamine and (E,E)-N,N'-bis(4-nitrobenzylidene)hexane-1,6-diamine.

Authors:  Christopher Glidewell; John N Low; Janet M S Skakle; James L Wardell
Journal:  Acta Crystallogr C       Date:  2005-12-10       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  pi-Stacked hydrogen-bonded sheets in N,N'-bis(4-nitrobenzylidene)ethane-1,2-diamine and pi-stacked hydrogen-bonded chains in N,N'-bis(4-nitrobenzylidene)propane-1,3-diamine.

Authors:  Joao A S Bomfim; James L Wardell; John N Low; Janet M S Skakle; Christopher Glidewell
Journal:  Acta Crystallogr C       Date:  2004-12-18       Impact factor: 1.172

4.  N,N'-Bis(5-bromo-2-hydroxy-benzyl-idene)-2,2-dimethylpropane-1,3-diamine.

Authors:  Hoong-Kun Fun; Reza Kia; Hadi Kargar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-06

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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