| Literature DB >> 21583887 |
Reza Kia, Hoong-Kun Fun, Hadi Kargar.
Abstract
The asymmetric unit of the title compound, C(19)H(22)N(2)O(2)·2H(2)O, comprises a zwitterionic form of the Schiff base compound and two water mol-ecules of crystallization. Inter-molecular N-H⋯O, C-H⋯O and O-H⋯N hydrogen bonds involving one of the water mol-ecules in the asymmetric unit generate seven- and eight-membered rings, with R(2) (1)(7) and R(2) (2)(8) ring motifs, respectively. The dihedral angle beween the two aromatic rings is 86.5 (2)°. The imino and iminium groups are coplanar with the benzene rings to which they are attached, making dihedral angles (N-C-C-C) of -179.3 (5) and -179.2 (4)°, respectively. Validation software indicates the higher symmetry space group Pnma for this structure. However, this process ignores H atoms and the zwitterionic configuration of the main mol-ecule breaks the higher symmetry. Solution in Pna2(1) provides a chemically sensible zwitterionic compound with improved residuals. In the crystal structure, mol-ecules are linked together through inter-molecular O-H⋯O, O-H⋯N, N-H⋯O and C-H⋯O inter-actions, forming a three-dimensional network. The crystal structure is further stabilized by inter-molecular C-H⋯π inter-actions.Entities:
Year: 2009 PMID: 21583887 PMCID: PMC2977751 DOI: 10.1107/S1600536809013804
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C19H22N2O2·2H2O | |
| Orthorhombic, | Mo |
| Hall symbol: P 2c -2n | Cell parameters from 1477 reflections |
| θ = 2.4–29.9° | |
| µ = 0.09 mm−1 | |
| Block, orange | |
| 0.34 × 0.21 × 0.11 mm |
| Bruker SMART APEXII CCD area-detector diffractometer | 2237 independent reflections |
| Radiation source: fine-focus sealed tube | 1753 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.5°, θmin = 2.4° |
| Absorption correction: multi-scan ( | |
| 10183 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2237 reflections | (Δ/σ)max < 0.001 |
| 235 parameters | Δρmax = 0.27 e Å−3 |
| 3 restraints | Δρmin = −0.20 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.0498 (3) | 0.5696 (3) | 1.0250 (3) | 0.0254 (8) | |
| O2 | 0.0475 (3) | 0.5792 (3) | 0.4102 (2) | 0.0217 (7) | |
| N1 | 0.5104 (3) | 0.5803 (3) | 0.8323 (3) | 0.0192 (8) | |
| N2 | 0.5136 (3) | 0.5842 (3) | 0.5796 (3) | 0.0186 (8) | |
| C1 | 0.2946 (4) | 0.5328 (4) | 0.8831 (4) | 0.0181 (10) | |
| H1A | 0.3225 | 0.4895 | 0.8270 | 0.022* | |
| C2 | 0.1925 (4) | 0.5165 (4) | 0.9112 (4) | 0.0178 (10) | |
| H2A | 0.1528 | 0.4627 | 0.8741 | 0.021* | |
| C3 | 0.1496 (4) | 0.5802 (4) | 0.9947 (4) | 0.0184 (10) | |
| C4 | 0.2104 (4) | 0.6615 (4) | 1.0498 (4) | 0.0221 (10) | |
| H4A | 0.1828 | 0.7050 | 1.1059 | 0.026* | |
| C5 | 0.3115 (4) | 0.6764 (4) | 1.0197 (4) | 0.0211 (10) | |
| H5A | 0.3510 | 0.7310 | 1.0560 | 0.025* | |
| C6 | 0.3563 (4) | 0.6130 (4) | 0.9374 (4) | 0.0181 (10) | |
| C7 | 0.4645 (4) | 0.6339 (4) | 0.9073 (4) | 0.0186 (10) | |
| H7A | 0.5010 | 0.6896 | 0.9457 | 0.022* | |
| C8 | 0.6178 (4) | 0.6143 (4) | 0.8131 (4) | 0.0172 (9) | |
| H8A | 0.6594 | 0.5447 | 0.8092 | 0.021* | |
| H8B | 0.6416 | 0.6593 | 0.8742 | 0.021* | |
| C9 | 0.63477 (18) | 0.6854 (2) | 0.7101 (5) | 0.0166 (5) | |
| C10 | 0.6196 (4) | 0.6143 (4) | 0.6059 (4) | 0.0207 (10) | |
| H10A | 0.6481 | 0.6580 | 0.5463 | 0.025* | |
| H10B | 0.6588 | 0.5431 | 0.6122 | 0.025* | |
| C11 | 0.4577 (4) | 0.6396 (3) | 0.5096 (3) | 0.0173 (9) | |
| H11A | 0.4891 | 0.7009 | 0.4737 | 0.021* | |
| C12 | 0.3548 (4) | 0.6168 (4) | 0.4823 (4) | 0.0160 (9) | |
| C13 | 0.3087 (4) | 0.6874 (4) | 0.4023 (4) | 0.0186 (10) | |
| H13A | 0.3476 | 0.7432 | 0.3668 | 0.022* | |
| C14 | 0.2061 (4) | 0.6736 (4) | 0.3767 (4) | 0.0183 (9) | |
| H14A | 0.1768 | 0.7206 | 0.3241 | 0.022* | |
| C15 | 0.1448 (4) | 0.5894 (4) | 0.4291 (4) | 0.0172 (9) | |
| C16 | 0.1949 (4) | 0.5154 (3) | 0.5056 (4) | 0.0182 (10) | |
| H16A | 0.1574 | 0.4564 | 0.5382 | 0.022* | |
| C17 | 0.2949 (4) | 0.5287 (3) | 0.5318 (4) | 0.0181 (10) | |
| H17A | 0.3246 | 0.4798 | 0.5826 | 0.022* | |
| C18 | 0.56782 (19) | 0.7944 (2) | 0.7087 (5) | 0.0209 (6) | |
| H18A | 0.5770 | 0.8364 | 0.7748 | 0.031* | |
| H18B | 0.4971 | 0.7725 | 0.7014 | 0.031* | |
| H18C | 0.5873 | 0.8426 | 0.6491 | 0.031* | |
| C19 | 0.74958 (18) | 0.7180 (2) | 0.7099 (6) | 0.0230 (6) | |
| H19A | 0.7659 | 0.7590 | 0.7750 | 0.034* | |
| H19B | 0.7640 | 0.7666 | 0.6490 | 0.034* | |
| H19C | 0.7903 | 0.6487 | 0.7057 | 0.034* | |
| O1W | 0.02979 (14) | 0.33777 (16) | 0.7189 (3) | 0.0223 (5) | |
| H1W1 | 0.0021 | 0.3754 | 0.6592 | 0.033* | |
| H2W1 | 0.0012 | 0.3713 | 0.7731 | 0.033* | |
| O2W | 0.45692 (15) | 0.38775 (16) | 0.7030 (3) | 0.0247 (5) | |
| H1W2 | 0.4922 | 0.3279 | 0.6916 | 0.037* | |
| H2W2 | 0.4735 | 0.4056 | 0.7681 | 0.037* | |
| H1N2 | 0.487 (3) | 0.520 (3) | 0.618 (3) | 0.020 (9)* | |
| H1O1 | 0.020 (3) | 0.524 (4) | 0.984 (4) | 0.040 (14)* |
| O1 | 0.0152 (16) | 0.0329 (16) | 0.0281 (17) | −0.0051 (14) | 0.0031 (13) | −0.0086 (14) |
| O2 | 0.0171 (16) | 0.0261 (15) | 0.0219 (16) | −0.0001 (13) | −0.0042 (13) | 0.0062 (12) |
| N1 | 0.020 (2) | 0.0172 (18) | 0.0207 (18) | −0.0025 (17) | 0.0044 (15) | 0.0045 (16) |
| N2 | 0.0145 (19) | 0.0181 (18) | 0.0231 (19) | −0.0025 (16) | 0.0018 (15) | −0.0003 (15) |
| C1 | 0.019 (2) | 0.019 (2) | 0.016 (2) | 0.001 (2) | 0.0061 (19) | 0.0063 (18) |
| C2 | 0.018 (3) | 0.020 (2) | 0.015 (2) | −0.0032 (19) | −0.0010 (19) | 0.0004 (17) |
| C3 | 0.012 (2) | 0.0189 (19) | 0.025 (2) | −0.0004 (17) | 0.0006 (17) | 0.0025 (18) |
| C4 | 0.022 (2) | 0.0227 (19) | 0.022 (2) | 0.0024 (19) | 0.0011 (19) | −0.0022 (18) |
| C5 | 0.026 (3) | 0.0182 (18) | 0.019 (2) | −0.0060 (19) | −0.004 (2) | 0.0028 (18) |
| C6 | 0.021 (2) | 0.0139 (18) | 0.019 (2) | 0.0006 (19) | 0.0014 (18) | 0.0042 (19) |
| C7 | 0.0090 (19) | 0.024 (2) | 0.023 (2) | −0.0051 (17) | −0.0087 (18) | 0.0076 (18) |
| C8 | 0.010 (2) | 0.017 (2) | 0.025 (2) | 0.0022 (19) | −0.0017 (18) | 0.004 (2) |
| C9 | 0.0150 (11) | 0.0190 (11) | 0.0157 (13) | −0.0035 (10) | 0.002 (2) | −0.004 (2) |
| C10 | 0.021 (2) | 0.025 (2) | 0.016 (2) | −0.004 (2) | −0.0033 (19) | 0.000 (2) |
| C11 | 0.029 (2) | 0.0100 (16) | 0.013 (2) | 0.0029 (18) | −0.0015 (18) | −0.0009 (15) |
| C12 | 0.012 (2) | 0.0166 (18) | 0.020 (2) | 0.0025 (18) | 0.0026 (17) | −0.0080 (19) |
| C13 | 0.018 (2) | 0.0142 (17) | 0.024 (2) | −0.0012 (17) | 0.0025 (19) | 0.0039 (17) |
| C14 | 0.023 (2) | 0.0161 (18) | 0.016 (2) | 0.0023 (18) | 0.0008 (19) | 0.0027 (17) |
| C15 | 0.021 (2) | 0.0144 (16) | 0.017 (2) | 0.0029 (18) | −0.0014 (18) | −0.0027 (17) |
| C16 | 0.018 (3) | 0.0117 (18) | 0.025 (3) | 0.0003 (18) | 0.0044 (19) | 0.0002 (18) |
| C17 | 0.021 (2) | 0.0116 (17) | 0.022 (2) | 0.0041 (18) | 0.0054 (19) | 0.0051 (18) |
| C18 | 0.0220 (12) | 0.0170 (12) | 0.0238 (15) | −0.0011 (10) | −0.001 (3) | −0.006 (2) |
| C19 | 0.0181 (12) | 0.0244 (13) | 0.0265 (16) | −0.0061 (11) | 0.002 (3) | 0.001 (3) |
| O1W | 0.0244 (10) | 0.0209 (9) | 0.0216 (13) | 0.0046 (8) | −0.0003 (16) | −0.0010 (13) |
| O2W | 0.0286 (11) | 0.0201 (9) | 0.0255 (14) | 0.0002 (8) | −0.0010 (18) | −0.0041 (16) |
| O1—C3 | 1.359 (6) | C9—C10 | 1.543 (7) |
| O1—H1O1 | 0.83 (4) | C10—H10A | 0.9700 |
| O2—C15 | 1.295 (6) | C10—H10B | 0.9700 |
| N1—C7 | 1.267 (6) | C11—C12 | 1.407 (7) |
| N1—C8 | 1.473 (6) | C11—H11A | 0.9300 |
| N2—C11 | 1.302 (6) | C12—C13 | 1.418 (6) |
| N2—C10 | 1.461 (6) | C12—C17 | 1.421 (6) |
| N2—H1N2 | 0.95 (4) | C13—C14 | 1.384 (8) |
| C1—C2 | 1.388 (7) | C13—H13A | 0.9300 |
| C1—C6 | 1.398 (7) | C14—C15 | 1.415 (7) |
| C1—H1A | 0.9300 | C14—H14A | 0.9300 |
| C2—C3 | 1.387 (6) | C15—C16 | 1.434 (6) |
| C2—H2A | 0.9300 | C16—C17 | 1.352 (7) |
| C3—C4 | 1.405 (7) | C16—H16A | 0.9300 |
| C4—C5 | 1.380 (8) | C17—H17A | 0.9300 |
| C4—H4A | 0.9300 | C18—H18A | 0.9600 |
| C5—C6 | 1.385 (7) | C18—H18B | 0.9600 |
| C5—H5A | 0.9300 | C18—H18C | 0.9600 |
| C6—C7 | 1.480 (6) | C19—H19A | 0.9600 |
| C7—H7A | 0.9300 | C19—H19B | 0.9600 |
| C8—C9 | 1.535 (7) | C19—H19C | 0.9600 |
| C8—H8A | 0.9700 | O1W—H1W1 | 0.9309 |
| C8—H8B | 0.9700 | O1W—H2W1 | 0.8614 |
| C9—C18 | 1.529 (3) | O2W—H1W2 | 0.8404 |
| C9—C19 | 1.543 (3) | O2W—H2W2 | 0.8612 |
| C3—O1—H1O1 | 110 (4) | C9—C10—H10A | 108.3 |
| C7—N1—C8 | 115.9 (4) | N2—C10—H10B | 108.3 |
| C11—N2—C10 | 124.2 (4) | C9—C10—H10B | 108.3 |
| C11—N2—H1N2 | 121 (2) | H10A—C10—H10B | 107.4 |
| C10—N2—H1N2 | 115 (2) | N2—C11—C12 | 127.0 (4) |
| C2—C1—C6 | 121.3 (4) | N2—C11—H11A | 116.5 |
| C2—C1—H1A | 119.4 | C12—C11—H11A | 116.5 |
| C6—C1—H1A | 119.4 | C11—C12—C13 | 117.7 (4) |
| C3—C2—C1 | 120.2 (4) | C11—C12—C17 | 123.6 (4) |
| C3—C2—H2A | 119.9 | C13—C12—C17 | 118.7 (4) |
| C1—C2—H2A | 119.9 | C14—C13—C12 | 120.3 (4) |
| O1—C3—C2 | 123.0 (4) | C14—C13—H13A | 119.8 |
| O1—C3—C4 | 117.7 (4) | C12—C13—H13A | 119.8 |
| C2—C3—C4 | 119.3 (4) | C13—C14—C15 | 121.3 (4) |
| C5—C4—C3 | 119.3 (5) | C13—C14—H14A | 119.4 |
| C5—C4—H4A | 120.3 | C15—C14—H14A | 119.4 |
| C3—C4—H4A | 120.3 | O2—C15—C14 | 122.1 (4) |
| C4—C5—C6 | 122.4 (4) | O2—C15—C16 | 120.8 (4) |
| C4—C5—H5A | 118.8 | C14—C15—C16 | 117.1 (4) |
| C6—C5—H5A | 118.8 | C17—C16—C15 | 122.0 (4) |
| C5—C6—C1 | 117.5 (4) | C17—C16—H16A | 119.0 |
| C5—C6—C7 | 120.1 (4) | C15—C16—H16A | 119.0 |
| C1—C6—C7 | 122.3 (4) | C16—C17—C12 | 120.5 (4) |
| N1—C7—C6 | 123.8 (4) | C16—C17—H17A | 119.8 |
| N1—C7—H7A | 118.1 | C12—C17—H17A | 119.8 |
| C6—C7—H7A | 118.1 | C9—C18—H18A | 109.5 |
| N1—C8—C9 | 114.5 (3) | C9—C18—H18B | 109.5 |
| N1—C8—H8A | 108.6 | H18A—C18—H18B | 109.5 |
| C9—C8—H8A | 108.6 | C9—C18—H18C | 109.5 |
| N1—C8—H8B | 108.6 | H18A—C18—H18C | 109.5 |
| C9—C8—H8B | 108.6 | H18B—C18—H18C | 109.5 |
| H8A—C8—H8B | 107.6 | C9—C19—H19A | 109.5 |
| C18—C9—C8 | 111.4 (4) | C9—C19—H19B | 109.5 |
| C18—C9—C19 | 110.7 (2) | H19A—C19—H19B | 109.5 |
| C8—C9—C19 | 105.7 (4) | C9—C19—H19C | 109.5 |
| C18—C9—C10 | 110.7 (4) | H19A—C19—H19C | 109.5 |
| C8—C9—C10 | 113.3 (2) | H19B—C19—H19C | 109.5 |
| C19—C9—C10 | 104.6 (4) | H1W1—O1W—H2W1 | 104.2 |
| N2—C10—C9 | 115.8 (4) | H1W2—O2W—H2W2 | 102.5 |
| N2—C10—H10A | 108.3 | ||
| C6—C1—C2—C3 | −0.1 (7) | C11—N2—C10—C9 | 99.7 (5) |
| C1—C2—C3—O1 | 178.9 (4) | C18—C9—C10—N2 | −53.5 (5) |
| C1—C2—C3—C4 | 0.4 (7) | C8—C9—C10—N2 | 72.5 (4) |
| O1—C3—C4—C5 | −178.6 (4) | C19—C9—C10—N2 | −172.8 (4) |
| C2—C3—C4—C5 | 0.0 (7) | C10—N2—C11—C12 | −178.4 (4) |
| C3—C4—C5—C6 | −0.7 (7) | N2—C11—C12—C13 | −179.2 (4) |
| C4—C5—C6—C1 | 0.9 (7) | N2—C11—C12—C17 | 1.9 (7) |
| C4—C5—C6—C7 | 179.0 (4) | C11—C12—C13—C14 | −176.2 (4) |
| C2—C1—C6—C5 | −0.6 (7) | C17—C12—C13—C14 | 2.8 (7) |
| C2—C1—C6—C7 | −178.6 (4) | C12—C13—C14—C15 | −0.1 (7) |
| C8—N1—C7—C6 | 179.1 (4) | C13—C14—C15—O2 | 176.4 (4) |
| C5—C6—C7—N1 | −179.3 (4) | C13—C14—C15—C16 | −3.1 (7) |
| C1—C6—C7—N1 | −1.3 (7) | O2—C15—C16—C17 | −175.9 (5) |
| C7—N1—C8—C9 | −106.9 (4) | C14—C15—C16—C17 | 3.6 (7) |
| N1—C8—C9—C18 | 56.0 (4) | C15—C16—C17—C12 | −1.0 (7) |
| N1—C8—C9—C19 | 176.4 (4) | C11—C12—C17—C16 | 176.6 (4) |
| N1—C8—C9—C10 | −69.6 (4) | C13—C12—C17—C16 | −2.3 (7) |
| H··· | ||||
| O1W—H1W1···O1i | 0.93 | 1.91 | 2.830 (5) | 171 |
| O1W—H2W1···O2ii | 0.86 | 1.90 | 2.751 (4) | 168 |
| O2W—H1W2···O1Wiii | 0.84 | 2.00 | 2.774 (3) | 153 |
| O2W—H2W2···N1 | 0.86 | 2.22 | 2.826 (4) | 127 |
| N2—H1N2···O2W | 0.95 (4) | 1.90 (4) | 2.832 (4) | 170 (3) |
| O1—H1O1···O2ii | 0.83 (4) | 1.74 (5) | 2.565 (5) | 174 (5) |
| C17—H17A···O2W | 0.93 | 2.52 | 3.408 (6) | 161 |
| C10—H10B···Cg1iv | 0.97 | 2.69 | 3.422 (5) | 133 |
| C8—H8A···Cg2v | 0.97 | 2.74 | 3.497 (5) | 136 |
Hydrogen-bond geometry (Å, °)
Cg1 and Cg2 are the centroids of the C1–C6 and C12–C17 benzene rings, respectively.
| H⋯ | ||||
|---|---|---|---|---|
| O1 | 0.93 | 1.91 | 2.830 (5) | 171 |
| O1 | 0.86 | 1.90 | 2.751 (4) | 168 |
| O2 | 0.84 | 2.00 | 2.774 (3) | 153 |
| O2 | 0.86 | 2.22 | 2.826 (4) | 127 |
| N2—H1N2⋯O2 | 0.95 (4) | 1.90 (4) | 2.832 (4) | 170 (3) |
| O1—H1O1⋯O2ii | 0.83 (4) | 1.74 (5) | 2.565 (5) | 174 (5) |
| C17—H17 | 0.93 | 2.52 | 3.408 (6) | 161 |
| C10—H10 | 0.97 | 2.69 | 3.422 (5) | 133 |
| C8—H8 | 0.97 | 2.74 | 3.497 (5) | 136 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .