Literature DB >> 21583878

4,4,5,5-Tetra-methyl-2-(4-pyridinio)-2-imidazoline-1-oxyl-3-oxide perchlorate.

Zhi-Yong Gao1, Jiu-Li Chang, Dong Xian, Kai Jiang.   

Abstract

The crystal structure of the title compound, C(12)H(17)N(3)O(2) (+)·ClO(4) (-), consists of 4,4,5,5-tetra-methyl-2-(4-pyridinio)imidazoline-1-oxyl-3-oxide radical cations and perchlorate anions. Both the cation and the Cl atom of the anion are located on the same twofold rotation axis, and the crystal structure shows the average structure for the radical cation. The five-membered ring assumes a half-chair conformation. The cation links with the anion via N-H⋯O hydrogen bonding.

Entities:  

Year:  2009        PMID: 21583878      PMCID: PMC2977742          DOI: 10.1107/S1600536809013531

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Wang et al. (2004 ▶); Li et al. (2003 ▶); Kahn et al. (2000 ▶); Tsukahara et al. (2003 ▶); Fettouhi et al. (2003 ▶); Zhang et al. (2004 ▶); Fokin et al. (2004 ▶); Chang et al. (2009 ▶). For the synthesis, see: Ullman et al. (1970 ▶, 1972 ▶).

Experimental

Crystal data

C12H17N3O2ClO4 M = 334.74 Orthorhombic, a = 17.485 (4) Å b = 11.854 (2) Å c = 14.921 (2) Å V = 3092.6 (10) Å3 Z = 8 Mo Kα radiation μ = 0.28 mm−1 T = 273 K 0.33 × 0.26 × 0.23 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.915, T max = 0.930 3994 measured reflections 1204 independent reflections 1169 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.102 S = 1.06 1204 reflections 103 parameters 1 restraint H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.15 e Å−3 Absolute structure: Flack (1983 ▶), 457 Friedel pairs Flack parameter: 0.12 (10) Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809013531/xu2504sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809013531/xu2504Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H17N3O2+·ClO4F(000) = 1400
Mr = 334.74Dx = 1.438 Mg m3
Orthorhombic, Fdd2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: F 2 -2dCell parameters from 2949 reflections
a = 17.485 (4) Åθ = 2.3–29.0°
b = 11.854 (2) ŵ = 0.28 mm1
c = 14.921 (2) ÅT = 273 K
V = 3092.6 (10) Å3Block, dark-purple
Z = 80.33 × 0.26 × 0.23 mm
Bruker SMART CCD area-detector diffractometer1204 independent reflections
Radiation source: fine-focus sealed tube1169 reflections with I > 2σ(I)
graphiteRint = 0.016
φ and ω scansθmax = 25.5°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −21→20
Tmin = 0.915, Tmax = 0.930k = −11→14
3994 measured reflectionsl = −15→18
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.033w = 1/[σ2(Fo2) + (0.0762P)2 + 1.0334P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.102(Δ/σ)max < 0.001
S = 1.06Δρmax = 0.27 e Å3
1204 reflectionsΔρmin = −0.15 e Å3
103 parametersExtinction correction: SHELXTL (Bruker, 2000), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
1 restraintExtinction coefficient: 0.0026 (5)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 457 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.12 (10)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.00000.50000.05797 (7)0.0787 (4)
O20.0203 (2)0.4065 (5)0.0039 (3)0.1497 (15)
O30.06280 (15)0.5281 (3)0.1140 (2)0.1055 (9)
N10.00000.50000.2971 (2)0.0684 (10)
H1B0.00000.50000.23950.082*
N20.05399 (9)0.54721 (12)0.62987 (12)0.0399 (4)
C10.04640 (17)0.5698 (2)0.33929 (18)0.0626 (6)
H1A0.07850.61690.30670.075*
C20.04743 (13)0.57302 (19)0.43134 (16)0.0520 (5)
H2A0.07930.62320.46140.062*
C30.00000.50000.4789 (2)0.0417 (6)
C40.00000.50000.5764 (2)0.0379 (6)
C50.02991 (11)0.54883 (16)0.72622 (14)0.0425 (5)
C60.09853 (14)0.5301 (2)0.78664 (19)0.0630 (6)
H6A0.13220.59390.78270.095*
H6B0.12530.46340.76800.095*
H6C0.08160.52130.84740.095*
C7−0.00457 (14)0.66478 (19)0.74312 (19)0.0616 (7)
H7A0.03520.72060.74220.092*
H7B−0.02930.66540.80060.092*
H7C−0.04140.68150.69720.092*
O10.11652 (8)0.59302 (15)0.60418 (12)0.0599 (5)
U11U22U33U12U13U23
Cl10.0631 (5)0.1338 (9)0.0392 (5)−0.0116 (5)0.0000.000
O20.154 (3)0.199 (4)0.096 (3)0.023 (3)0.013 (2)−0.053 (3)
O30.0789 (14)0.167 (2)0.0707 (17)−0.0372 (15)−0.0088 (13)0.0105 (16)
N10.092 (2)0.0776 (18)0.0360 (17)0.0404 (17)0.0000.000
N20.0356 (7)0.0440 (7)0.0400 (10)−0.0075 (6)−0.0005 (7)−0.0002 (6)
C10.0729 (15)0.0692 (14)0.0457 (14)0.0203 (11)0.0104 (11)0.0154 (11)
C20.0547 (12)0.0570 (10)0.0443 (13)0.0068 (9)0.0035 (9)0.0088 (9)
C30.0394 (13)0.0430 (12)0.0425 (18)0.0116 (10)0.0000.000
C40.0367 (12)0.0376 (12)0.0394 (18)−0.0002 (9)0.0000.000
C50.0409 (10)0.0499 (10)0.0368 (11)−0.0056 (9)−0.0015 (9)−0.0025 (8)
C60.0548 (12)0.0865 (15)0.0478 (15)−0.0160 (12)−0.0141 (11)0.0046 (11)
C70.0683 (14)0.0550 (11)0.0614 (17)−0.0014 (10)0.0048 (12)−0.0153 (10)
O10.0461 (7)0.0784 (10)0.0553 (11)−0.0250 (7)0.0047 (7)0.0008 (8)
Cl1—O2i1.416 (4)C2—H2A0.9300
Cl1—O21.416 (4)C3—C2i1.393 (3)
Cl1—O31.420 (3)C3—C41.455 (4)
Cl1—O3i1.420 (3)C4—N2i1.357 (2)
N1—C11.318 (4)C5—C61.517 (3)
N1—C1i1.318 (4)C5—C71.522 (3)
N1—H1B0.8600C5—C5i1.560 (4)
N2—O11.280 (2)C6—H6A0.9600
N2—C41.357 (2)C6—H6B0.9600
N2—C51.498 (3)C6—H6C0.9600
C1—C21.374 (4)C7—H7A0.9600
C1—H1A0.9300C7—H7B0.9600
C2—C31.393 (3)C7—H7C0.9600
O2i—Cl1—O2110.5 (5)N2—C4—N2i108.0 (3)
O2i—Cl1—O3110.2 (3)N2—C4—C3126.01 (13)
O2—Cl1—O3109.0 (2)N2i—C4—C3126.01 (13)
O2i—Cl1—O3i109.0 (2)N2—C5—C6110.26 (18)
O2—Cl1—O3i110.2 (3)N2—C5—C7106.37 (18)
O3—Cl1—O3i107.9 (2)C6—C5—C7110.28 (19)
C1—N1—C1i123.0 (3)N2—C5—C5i100.31 (10)
C1—N1—H1B118.5C6—C5—C5i114.96 (17)
C1i—N1—H1B118.5C7—C5—C5i113.9 (2)
O1—N2—C4126.40 (18)C5—C6—H6A109.5
O1—N2—C5121.47 (16)C5—C6—H6B109.5
C4—N2—C5111.96 (16)H6A—C6—H6B109.5
N1—C1—C2120.2 (3)C5—C6—H6C109.5
N1—C1—H1A119.9H6A—C6—H6C109.5
C2—C1—H1A119.9H6B—C6—H6C109.5
C1—C2—C3118.9 (2)C5—C7—H7A109.5
C1—C2—H2A120.5C5—C7—H7B109.5
C3—C2—H2A120.5H7A—C7—H7B109.5
C2i—C3—C2118.8 (3)C5—C7—H7C109.5
C2i—C3—C4120.61 (16)H7A—C7—H7C109.5
C2—C3—C4120.61 (16)H7B—C7—H7C109.5
C1i—N1—C1—C2−0.68 (16)C2—C3—C4—N2−15.56 (13)
N1—C1—C2—C31.3 (3)C2i—C3—C4—N2i−15.56 (13)
C1—C2—C3—C2i−0.65 (15)C2—C3—C4—N2i164.44 (13)
C1—C2—C3—C4179.35 (15)O1—N2—C5—C6−39.6 (2)
O1—N2—C4—N2i175.0 (2)C4—N2—C5—C6144.69 (16)
C5—N2—C4—N2i−9.58 (9)O1—N2—C5—C780.0 (2)
O1—N2—C4—C3−5.0 (2)C4—N2—C5—C7−95.74 (16)
C5—N2—C4—C3170.42 (9)O1—N2—C5—C5i−161.21 (18)
C2i—C3—C4—N2164.44 (13)C4—N2—C5—C5i23.1 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1B···O30.862.202.963 (4)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1B⋯O30.862.202.963 (4)149
  5 in total

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3.  4,4,5,5-Tetramethyl-2-(4-pyridinio)imidazoline-1-oxyl-3-oxide chloride.

Authors:  Jiu Li Chang; Zhi Yong Gao; Kai Jiang
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