| Literature DB >> 21583876 |
Aslı Oztürk, Ilknur Babahan, Nursabah Sarıkavaklı, Tuncer Hökelek.
Abstract
In the title compound, C(9)H(10)N(4)O(2)·H(2)O, the oxime unit has an E configuration, and an intra-molecular N-H⋯N hydrogen bond results in the formation of a planar five-membered ring, which is oriented with respect to the aromatic ring at a dihedral angle of 74.82 (17)°. In the crystal structure, inter-molecular O-H⋯O and N-H⋯O hydrogen bonds link the mol-ecules and R(2) (2)(8) ring motifs are apparent.Entities:
Year: 2009 PMID: 21583876 PMCID: PMC2977740 DOI: 10.1107/S1600536809013865
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H10N4O2·H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 25 reflections | |
| θ = 8.6–17.3° | |
| µ = 0.11 mm−1 | |
| α = 71.900 (3)° | |
| β = 89.998 (5)° | Prism, colorless |
| γ = 78.538 (5)° | 0.40 × 0.25 × 0.20 mm |
| Enraf–Nonius TurboCAD-4 diffractometer | 867 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 24.3°, θmin = 3.4° |
| Non–profiled ω scans | |
| Absorption correction: ψ scan (North | |
| 1953 measured reflections | 3 standard reflections every 120 min |
| 1752 independent reflections | intensity decay: 1% |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1752 reflections | (Δ/σ)max < 0.001 |
| 171 parameters | Δρmax = 0.19 e Å−3 |
| 5 restraints | Δρmin = −0.34 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.5650 (8) | −0.2847 (5) | 0.9749 (4) | 0.0635 (13) | |
| O2 | 1.6136 (8) | −0.2215 (5) | 0.5421 (4) | 0.0583 (13) | |
| H21 | 1.658 (12) | −0.131 (10) | 0.490 (6) | 0.09 (3)* | |
| O3 | 0.2334 (12) | −0.0741 (10) | 1.0657 (7) | 0.132 (3) | |
| H31 | 0.344 (10) | −0.122 (11) | 1.028 (6) | 0.125* | |
| H32 | 0.088 (7) | −0.084 (10) | 1.041 (7) | 0.125* | |
| N1 | 1.0377 (8) | −0.2812 (6) | 0.7948 (4) | 0.0456 (13) | |
| N2 | 0.8573 (9) | −0.2253 (6) | 0.8554 (4) | 0.0498 (14) | |
| H22 | 0.823 (9) | −0.128 (4) | 0.863 (4) | 0.040 (17)* | |
| N3 | 0.7601 (11) | −0.4938 (7) | 0.9070 (5) | 0.0594 (16) | |
| H3A | 0.884 (8) | −0.531 (8) | 0.872 (5) | 0.08 (2)* | |
| H3B | 0.665 (11) | −0.578 (9) | 0.942 (5) | 0.08 (2)* | |
| N4 | 1.4358 (8) | −0.1346 (5) | 0.5950 (4) | 0.0435 (13) | |
| C1 | 1.0910 (10) | 0.0218 (7) | 0.7132 (5) | 0.0389 (14) | |
| C2 | 1.2415 (11) | 0.0996 (7) | 0.7590 (5) | 0.0538 (17) | |
| H2 | 1.3800 | 0.0317 | 0.8044 | 0.065* | |
| C3 | 1.1895 (12) | 0.2758 (8) | 0.7384 (6) | 0.0646 (19) | |
| H3 | 1.2905 | 0.3257 | 0.7719 | 0.077* | |
| C4 | 0.9938 (13) | 0.3786 (8) | 0.6700 (6) | 0.0602 (18) | |
| H4 | 0.9626 | 0.4987 | 0.6543 | 0.072* | |
| C5 | 0.8426 (12) | 0.3024 (8) | 0.6244 (5) | 0.065 (2) | |
| H5 | 0.7064 | 0.3716 | 0.5778 | 0.078* | |
| C6 | 0.8891 (12) | 0.1243 (8) | 0.6466 (5) | 0.0591 (18) | |
| H6 | 0.7829 | 0.0742 | 0.6162 | 0.071* | |
| C7 | 1.1479 (10) | −0.1688 (6) | 0.7314 (4) | 0.0387 (14) | |
| C8 | 0.7189 (11) | −0.3364 (7) | 0.9167 (5) | 0.0455 (15) | |
| C9 | 1.3383 (11) | −0.2382 (8) | 0.6696 (5) | 0.0444 (15) | |
| H9 | 1.374 (10) | −0.359 (9) | 0.687 (5) | 0.064 (19)* |
| O1 | 0.066 (3) | 0.051 (3) | 0.078 (3) | −0.018 (2) | 0.036 (3) | −0.024 (2) |
| O2 | 0.062 (3) | 0.044 (3) | 0.064 (3) | −0.005 (2) | 0.026 (2) | −0.014 (2) |
| O3 | 0.106 (5) | 0.148 (6) | 0.173 (7) | 0.002 (5) | 0.008 (5) | −0.111 (5) |
| N1 | 0.049 (3) | 0.041 (3) | 0.048 (3) | −0.012 (2) | 0.017 (3) | −0.013 (2) |
| N2 | 0.058 (3) | 0.036 (3) | 0.057 (3) | −0.015 (3) | 0.019 (3) | −0.014 (3) |
| N3 | 0.065 (4) | 0.043 (3) | 0.076 (4) | −0.022 (3) | 0.030 (3) | −0.019 (3) |
| N4 | 0.046 (3) | 0.037 (3) | 0.046 (3) | −0.006 (2) | 0.009 (2) | −0.012 (2) |
| C1 | 0.038 (3) | 0.035 (3) | 0.041 (3) | −0.007 (3) | 0.011 (3) | −0.010 (3) |
| C2 | 0.050 (4) | 0.042 (4) | 0.066 (4) | −0.005 (3) | −0.008 (3) | −0.014 (3) |
| C3 | 0.062 (4) | 0.046 (4) | 0.089 (5) | −0.016 (4) | −0.003 (4) | −0.024 (4) |
| C4 | 0.074 (5) | 0.035 (3) | 0.071 (5) | −0.013 (4) | 0.013 (4) | −0.016 (3) |
| C5 | 0.068 (5) | 0.045 (4) | 0.067 (5) | 0.010 (4) | −0.011 (4) | −0.007 (4) |
| C6 | 0.060 (4) | 0.045 (4) | 0.065 (4) | −0.008 (3) | −0.014 (4) | −0.010 (3) |
| C7 | 0.043 (3) | 0.032 (3) | 0.037 (3) | −0.009 (3) | 0.002 (3) | −0.005 (3) |
| C8 | 0.049 (4) | 0.035 (3) | 0.046 (4) | −0.009 (3) | 0.012 (3) | −0.005 (3) |
| C9 | 0.051 (4) | 0.031 (3) | 0.051 (4) | −0.011 (3) | 0.007 (3) | −0.012 (3) |
| O1—C8 | 1.226 (6) | C2—H2 | 0.9300 |
| O2—N4 | 1.399 (5) | C3—H3 | 0.9300 |
| O2—H21 | 0.91 (8) | C4—C3 | 1.352 (9) |
| O3—H31 | 0.88 (7) | C4—C5 | 1.368 (9) |
| O3—H32 | 0.90 (3) | C4—H4 | 0.9300 |
| N1—C7 | 1.281 (6) | C5—C6 | 1.381 (8) |
| N2—N1 | 1.357 (6) | C5—H5 | 0.9300 |
| N2—C8 | 1.369 (7) | C6—H6 | 0.9300 |
| N2—H22 | 0.82 (3) | C7—C1 | 1.489 (7) |
| N3—H3A | 0.88 (3) | C8—N3 | 1.320 (7) |
| N3—H3B | 0.96 (7) | C9—N4 | 1.264 (7) |
| C1—C2 | 1.376 (8) | C9—C7 | 1.447 (7) |
| C1—C6 | 1.365 (8) | C9—H9 | 0.94 (6) |
| C2—C3 | 1.368 (8) | ||
| N4—O2—H21 | 101 (4) | C3—C4—C5 | 118.6 (6) |
| H31—O3—H32 | 105 (4) | C3—C4—H4 | 120.7 |
| C7—N1—N2 | 118.1 (5) | C5—C4—H4 | 120.7 |
| N1—N2—C8 | 120.5 (5) | C4—C5—C6 | 121.0 (6) |
| N1—N2—H22 | 126 (4) | C4—C5—H5 | 119.5 |
| C8—N2—H22 | 113 (4) | C6—C5—H5 | 119.5 |
| C8—N3—H3A | 122 (4) | C1—C6—C5 | 120.0 (6) |
| C8—N3—H3B | 123 (4) | C1—C6—H6 | 120.0 |
| H3A—N3—H3B | 115 (6) | C5—C6—H6 | 120.0 |
| C9—N4—O2 | 112.3 (4) | N1—C7—C1 | 126.4 (5) |
| C2—C1—C7 | 121.7 (5) | N1—C7—C9 | 114.9 (5) |
| C6—C1—C2 | 118.6 (5) | C9—C7—C1 | 118.7 (5) |
| C6—C1—C7 | 119.7 (5) | O1—C8—N2 | 119.1 (5) |
| C1—C2—H2 | 119.7 | O1—C8—N3 | 124.4 (6) |
| C3—C2—C1 | 120.7 (6) | N3—C8—N2 | 116.5 (5) |
| C3—C2—H2 | 119.7 | N4—C9—C7 | 119.3 (5) |
| C2—C3—H3 | 119.5 | N4—C9—H9 | 125 (4) |
| C4—C3—C2 | 121.1 (6) | C7—C9—H9 | 116 (3) |
| C4—C3—H3 | 119.5 | ||
| N2—N1—C7—C1 | −2.8 (8) | C5—C4—C3—C2 | 2.2 (10) |
| N2—N1—C7—C9 | 179.9 (5) | C3—C4—C5—C6 | −0.6 (10) |
| C8—N2—N1—C7 | 174.2 (5) | C4—C5—C6—C1 | −1.2 (10) |
| N1—N2—C8—O1 | 176.6 (5) | N1—C7—C1—C2 | 106.3 (7) |
| N1—N2—C8—N3 | −4.4 (8) | N1—C7—C1—C6 | −75.8 (8) |
| C6—C1—C2—C3 | 0.1 (9) | C9—C7—C1—C2 | −76.5 (7) |
| C7—C1—C2—C3 | 178.0 (6) | C9—C7—C1—C6 | 101.4 (6) |
| C2—C1—C6—C5 | 1.4 (9) | N4—C9—C7—N1 | 171.4 (5) |
| C7—C1—C6—C5 | −176.5 (6) | N4—C9—C7—C1 | −6.1 (8) |
| C1—C2—C3—C4 | −2.0 (10) | C7—C9—N4—O2 | −179.2 (5) |
| H··· | ||||
| N3—H3A···N1 | 0.88 (3) | 2.32 (6) | 2.647 (8) | 102 (5) |
| O3—H31···O1 | 0.88 (7) | 1.92 (8) | 2.776 (9) | 164 (8) |
| O3—H32···O3i | 0.90 (3) | 2.17 (7) | 2.909 (11) | 140 (7) |
| N2—H22···O3ii | 0.82 (3) | 2.10 (4) | 2.901 (10) | 162 (5) |
| N3—H3B···O1iii | 0.96 (7) | 1.96 (6) | 2.909 (8) | 169 (6) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3 | 0.88 (3) | 2.32 (6) | 2.647 (8) | 102 (5) |
| O3—H31⋯O1 | 0.88 (7) | 1.92 (8) | 2.776 (9) | 164 (8) |
| O3—H32⋯O3i | 0.90 (3) | 2.17 (7) | 2.909 (11) | 140 (7) |
| N2—H22⋯O3ii | 0.82 (3) | 2.10 (4) | 2.901 (10) | 162 (5) |
| N3—H3 | 0.96 (7) | 1.96 (6) | 2.909 (8) | 169 (6) |
Symmetry codes: (i) ; (ii) ; (iii) , .