Literature DB >> 21583876

(E,E)-1-(2-Hydroxy-imino-1-phenyl-ethyl-idene)semicarbazide monohydrate.

Aslı Oztürk, Ilknur Babahan, Nursabah Sarıkavaklı, Tuncer Hökelek.   

Abstract

In the title compound, C(9)H(10)N(4)O(2)·H(2)O, the oxime unit has an E configuration, and an intra-molecular N-H⋯N hydrogen bond results in the formation of a planar five-membered ring, which is oriented with respect to the aromatic ring at a dihedral angle of 74.82 (17)°. In the crystal structure, inter-molecular O-H⋯O and N-H⋯O hydrogen bonds link the mol-ecules and R(2) (2)(8) ring motifs are apparent.

Entities:  

Year:  2009        PMID: 21583876      PMCID: PMC2977740          DOI: 10.1107/S1600536809013865

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Balsamo et al. (1990 ▶); Marsman et al. (1999 ▶); Karle et al. (1996 ▶); Etter et al. (1990 ▶). For related structures, see: Sarıkavaklı et al. (2007 ▶, 2008 ▶); Özel Güven et al. (2007 ▶); Hökelek, Batı et al. (2001 ▶); Hökelek, Zülfikaroğlu et al. (2001 ▶); Büyükgüngör et al. (2003 ▶); Hökelek et al. (2004 ▶); Hökelek et al. (2004a ▶,b ▶). For reference structural data, see: Allen et al. (1987 ▶). For ring motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C9H10N4O2·H2O M = 224.23 Triclinic, a = 5.5593 (2) Å b = 8.2701 (3) Å c = 12.6193 (5) Å α = 71.900 (3)° β = 89.998 (5)° γ = 78.538 (5)° V = 539.29 (4) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 294 K 0.40 × 0.25 × 0.20 mm

Data collection

Enraf–Nonius TurboCAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.968, T max = 0.978 1953 measured reflections 1752 independent reflections 867 reflections with I > 2σ(I) R int = 0.048 3 standard reflections frequency: 120 min intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.060 wR(F 2) = 0.185 S = 1.05 1752 reflections 171 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.34 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809013865/hb2932sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809013865/hb2932Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H10N4O2·H2OZ = 2
Mr = 224.23F(000) = 236
Triclinic, P1Dx = 1.381 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.5593 (2) ÅCell parameters from 25 reflections
b = 8.2701 (3) Åθ = 8.6–17.3°
c = 12.6193 (5) ŵ = 0.11 mm1
α = 71.900 (3)°T = 294 K
β = 89.998 (5)°Prism, colorless
γ = 78.538 (5)°0.40 × 0.25 × 0.20 mm
V = 539.29 (4) Å3
Enraf–Nonius TurboCAD-4 diffractometer867 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.048
graphiteθmax = 24.3°, θmin = 3.4°
Non–profiled ω scansh = −6→0
Absorption correction: ψ scan (North et al., 1968)k = −9→9
Tmin = 0.968, Tmax = 0.978l = −14→14
1953 measured reflections3 standard reflections every 120 min
1752 independent reflections intensity decay: 1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.060Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.185H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0859P)2] where P = (Fo2 + 2Fc2)/3
1752 reflections(Δ/σ)max < 0.001
171 parametersΔρmax = 0.19 e Å3
5 restraintsΔρmin = −0.34 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.5650 (8)−0.2847 (5)0.9749 (4)0.0635 (13)
O21.6136 (8)−0.2215 (5)0.5421 (4)0.0583 (13)
H211.658 (12)−0.131 (10)0.490 (6)0.09 (3)*
O30.2334 (12)−0.0741 (10)1.0657 (7)0.132 (3)
H310.344 (10)−0.122 (11)1.028 (6)0.125*
H320.088 (7)−0.084 (10)1.041 (7)0.125*
N11.0377 (8)−0.2812 (6)0.7948 (4)0.0456 (13)
N20.8573 (9)−0.2253 (6)0.8554 (4)0.0498 (14)
H220.823 (9)−0.128 (4)0.863 (4)0.040 (17)*
N30.7601 (11)−0.4938 (7)0.9070 (5)0.0594 (16)
H3A0.884 (8)−0.531 (8)0.872 (5)0.08 (2)*
H3B0.665 (11)−0.578 (9)0.942 (5)0.08 (2)*
N41.4358 (8)−0.1346 (5)0.5950 (4)0.0435 (13)
C11.0910 (10)0.0218 (7)0.7132 (5)0.0389 (14)
C21.2415 (11)0.0996 (7)0.7590 (5)0.0538 (17)
H21.38000.03170.80440.065*
C31.1895 (12)0.2758 (8)0.7384 (6)0.0646 (19)
H31.29050.32570.77190.077*
C40.9938 (13)0.3786 (8)0.6700 (6)0.0602 (18)
H40.96260.49870.65430.072*
C50.8426 (12)0.3024 (8)0.6244 (5)0.065 (2)
H50.70640.37160.57780.078*
C60.8891 (12)0.1243 (8)0.6466 (5)0.0591 (18)
H60.78290.07420.61620.071*
C71.1479 (10)−0.1688 (6)0.7314 (4)0.0387 (14)
C80.7189 (11)−0.3364 (7)0.9167 (5)0.0455 (15)
C91.3383 (11)−0.2382 (8)0.6696 (5)0.0444 (15)
H91.374 (10)−0.359 (9)0.687 (5)0.064 (19)*
U11U22U33U12U13U23
O10.066 (3)0.051 (3)0.078 (3)−0.018 (2)0.036 (3)−0.024 (2)
O20.062 (3)0.044 (3)0.064 (3)−0.005 (2)0.026 (2)−0.014 (2)
O30.106 (5)0.148 (6)0.173 (7)0.002 (5)0.008 (5)−0.111 (5)
N10.049 (3)0.041 (3)0.048 (3)−0.012 (2)0.017 (3)−0.013 (2)
N20.058 (3)0.036 (3)0.057 (3)−0.015 (3)0.019 (3)−0.014 (3)
N30.065 (4)0.043 (3)0.076 (4)−0.022 (3)0.030 (3)−0.019 (3)
N40.046 (3)0.037 (3)0.046 (3)−0.006 (2)0.009 (2)−0.012 (2)
C10.038 (3)0.035 (3)0.041 (3)−0.007 (3)0.011 (3)−0.010 (3)
C20.050 (4)0.042 (4)0.066 (4)−0.005 (3)−0.008 (3)−0.014 (3)
C30.062 (4)0.046 (4)0.089 (5)−0.016 (4)−0.003 (4)−0.024 (4)
C40.074 (5)0.035 (3)0.071 (5)−0.013 (4)0.013 (4)−0.016 (3)
C50.068 (5)0.045 (4)0.067 (5)0.010 (4)−0.011 (4)−0.007 (4)
C60.060 (4)0.045 (4)0.065 (4)−0.008 (3)−0.014 (4)−0.010 (3)
C70.043 (3)0.032 (3)0.037 (3)−0.009 (3)0.002 (3)−0.005 (3)
C80.049 (4)0.035 (3)0.046 (4)−0.009 (3)0.012 (3)−0.005 (3)
C90.051 (4)0.031 (3)0.051 (4)−0.011 (3)0.007 (3)−0.012 (3)
O1—C81.226 (6)C2—H20.9300
O2—N41.399 (5)C3—H30.9300
O2—H210.91 (8)C4—C31.352 (9)
O3—H310.88 (7)C4—C51.368 (9)
O3—H320.90 (3)C4—H40.9300
N1—C71.281 (6)C5—C61.381 (8)
N2—N11.357 (6)C5—H50.9300
N2—C81.369 (7)C6—H60.9300
N2—H220.82 (3)C7—C11.489 (7)
N3—H3A0.88 (3)C8—N31.320 (7)
N3—H3B0.96 (7)C9—N41.264 (7)
C1—C21.376 (8)C9—C71.447 (7)
C1—C61.365 (8)C9—H90.94 (6)
C2—C31.368 (8)
N4—O2—H21101 (4)C3—C4—C5118.6 (6)
H31—O3—H32105 (4)C3—C4—H4120.7
C7—N1—N2118.1 (5)C5—C4—H4120.7
N1—N2—C8120.5 (5)C4—C5—C6121.0 (6)
N1—N2—H22126 (4)C4—C5—H5119.5
C8—N2—H22113 (4)C6—C5—H5119.5
C8—N3—H3A122 (4)C1—C6—C5120.0 (6)
C8—N3—H3B123 (4)C1—C6—H6120.0
H3A—N3—H3B115 (6)C5—C6—H6120.0
C9—N4—O2112.3 (4)N1—C7—C1126.4 (5)
C2—C1—C7121.7 (5)N1—C7—C9114.9 (5)
C6—C1—C2118.6 (5)C9—C7—C1118.7 (5)
C6—C1—C7119.7 (5)O1—C8—N2119.1 (5)
C1—C2—H2119.7O1—C8—N3124.4 (6)
C3—C2—C1120.7 (6)N3—C8—N2116.5 (5)
C3—C2—H2119.7N4—C9—C7119.3 (5)
C2—C3—H3119.5N4—C9—H9125 (4)
C4—C3—C2121.1 (6)C7—C9—H9116 (3)
C4—C3—H3119.5
N2—N1—C7—C1−2.8 (8)C5—C4—C3—C22.2 (10)
N2—N1—C7—C9179.9 (5)C3—C4—C5—C6−0.6 (10)
C8—N2—N1—C7174.2 (5)C4—C5—C6—C1−1.2 (10)
N1—N2—C8—O1176.6 (5)N1—C7—C1—C2106.3 (7)
N1—N2—C8—N3−4.4 (8)N1—C7—C1—C6−75.8 (8)
C6—C1—C2—C30.1 (9)C9—C7—C1—C2−76.5 (7)
C7—C1—C2—C3178.0 (6)C9—C7—C1—C6101.4 (6)
C2—C1—C6—C51.4 (9)N4—C9—C7—N1171.4 (5)
C7—C1—C6—C5−176.5 (6)N4—C9—C7—C1−6.1 (8)
C1—C2—C3—C4−2.0 (10)C7—C9—N4—O2−179.2 (5)
D—H···AD—HH···AD···AD—H···A
N3—H3A···N10.88 (3)2.32 (6)2.647 (8)102 (5)
O3—H31···O10.88 (7)1.92 (8)2.776 (9)164 (8)
O3—H32···O3i0.90 (3)2.17 (7)2.909 (11)140 (7)
N2—H22···O3ii0.82 (3)2.10 (4)2.901 (10)162 (5)
N3—H3B···O1iii0.96 (7)1.96 (6)2.909 (8)169 (6)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3A⋯N10.88 (3)2.32 (6)2.647 (8)102 (5)
O3—H31⋯O10.88 (7)1.92 (8)2.776 (9)164 (8)
O3—H32⋯O3i0.90 (3)2.17 (7)2.909 (11)140 (7)
N2—H22⋯O3ii0.82 (3)2.10 (4)2.901 (10)162 (5)
N3—H3B⋯O1iii0.96 (7)1.96 (6)2.909 (8)169 (6)

Symmetry codes: (i) ; (ii) ; (iii) , .

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