Literature DB >> 21583872

Di-4-pyridyl disulfide-isophthalic acid (1/1).

Dan-Jun Wang1, Jun-Ming Zhao, Jie Zhang, Jian-Li Lin.   

Abstract

In the title 1:1 cocrystal, C(10)H(8)N(2)S(2)·C(8)H(6)O(4), the asymmetric unit contains an isophthalic acid mol-ecule and a 4,4'-dipyridyl disulfide mol-ecule. The two carboxyl groups of isophthalic acid inter-act with neighbouring 4,4'-dipyridyl disulfide mol-ecules through O-H⋯N hydrogen bonds, forming a one-dimensional zigzag chain. Neighbouring chains are linked to each other via π-π stacking inter-actions between the pyridyl rings of adjacent 4,4'-dipyridyl disulfide mol-ecules [centroid-centroid distance = 3.7346 (6) Å], resulting in a layered motif. The dihedral angle between pyridine rings of 84.13 (7)° and the C-S-S-C torsion angle of 91.95 (1)° confirm the gauche conformation of 4,4'-dipyridyl disulfide.

Entities:  

Year:  2009        PMID: 21583872      PMCID: PMC2977736          DOI: 10.1107/S1600536809013397

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For ligands with two 4-pyridyl donors, see: Biradha et al. (2006 ▶); Sun et al. (2006 ▶); He et al. (2008 ▶); Suen et al. (2005 ▶). For related structures, see: Ranjbar et al. (2007 ▶).

Experimental

Crystal data

C10H8N2S2·C8H6O4 M = 386.43 Monoclinic, a = 5.9616 (12) Å b = 10.024 (2) Å c = 29.797 (6) Å β = 93.71 (3)° V = 1776.9 (6) Å3 Z = 4 Mo Kα radiation μ = 0.33 mm−1 T = 295 K 0.29 × 0.20 × 0.11 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.920, T max = 0.964 16923 measured reflections 4039 independent reflections 2330 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.135 S = 1.08 4039 reflections 235 parameters H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.41 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809013397/pv2150sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809013397/pv2150Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H8N2S2·C8H6O4F(000) = 800
Mr = 386.43Dx = 1.445 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 16923 reflections
a = 5.9616 (12) Åθ = 3.4–27.4°
b = 10.024 (2) ŵ = 0.33 mm1
c = 29.797 (6) ÅT = 295 K
β = 93.71 (3)°Platelet, colorless
V = 1776.9 (6) Å30.29 × 0.20 × 0.11 mm
Z = 4
Rigaku R-AXIS RAPID diffractometer4039 independent reflections
Radiation source: fine-focus sealed tube2330 reflections with I > 2σ(I)
graphiteRint = 0.048
Detector resolution: 0 pixels mm-1θmax = 27.4°, θmin = 3.4°
ω scansh = −7→7
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −12→12
Tmin = 0.920, Tmax = 0.964l = −38→38
16923 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.135H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0469P)2 + 0.8478P] where P = (Fo2 + 2Fc2)/3
4039 reflections(Δ/σ)max < 0.001
235 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.41 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.1566 (4)0.1783 (3)0.32831 (8)0.0472 (6)
C20.1371 (5)0.0516 (3)0.31039 (10)0.0570 (7)
H2A0.2419−0.01420.31870.068*
C3−0.0411 (5)0.0247 (3)0.27995 (10)0.0616 (8)
H3A−0.0545−0.06110.26820.074*
N1−0.1955 (4)0.1147 (2)0.26642 (7)0.0541 (6)
C4−0.1742 (5)0.2369 (3)0.28378 (9)0.0542 (7)
H4A−0.28060.30110.27480.065*
C5−0.0019 (5)0.2723 (3)0.31427 (9)0.0526 (7)
H5A0.00790.35890.32540.063*
S10.36292 (14)0.23223 (8)0.36981 (3)0.0629 (2)
S20.59614 (12)0.08517 (9)0.37425 (3)0.0664 (3)
C60.5151 (4)−0.0234 (3)0.41697 (8)0.0467 (6)
C70.6649 (4)−0.1247 (3)0.42909 (9)0.0543 (7)
H7A0.7977−0.13350.41460.065*
C80.6162 (5)−0.2124 (3)0.46265 (10)0.0588 (8)
H8A0.7195−0.27910.47080.071*
N20.4262 (4)−0.2055 (3)0.48407 (7)0.0571 (6)
C90.2814 (5)−0.1082 (3)0.47191 (9)0.0558 (7)
H9A0.1483−0.10310.48650.067*
C100.3170 (4)−0.0152 (3)0.43917 (9)0.0520 (7)
H10A0.21190.05130.43210.062*
O10.6473 (5)0.7527 (3)0.28620 (9)0.0996 (9)
O20.5074 (3)0.5519 (2)0.29642 (6)0.0634 (6)
H2C0.39670.57420.27150.095*
C110.6474 (5)0.6489 (3)0.30626 (9)0.0528 (7)
C120.8127 (4)0.6179 (3)0.34480 (8)0.0452 (6)
C131.0212 (5)0.6802 (3)0.34736 (9)0.0541 (7)
H13A1.05530.74260.32570.065*
C141.1780 (5)0.6495 (3)0.38191 (10)0.0603 (8)
H14A1.31790.69090.38330.072*
C151.1292 (4)0.5580 (3)0.41451 (9)0.0574 (8)
H15A1.23680.53680.43740.069*
C160.9196 (4)0.4977 (3)0.41308 (8)0.0467 (6)
C170.7617 (4)0.5277 (3)0.37792 (8)0.0451 (6)
H17A0.62140.48680.37670.054*
C180.8684 (5)0.3991 (3)0.44862 (9)0.0566 (7)
O31.0115 (4)0.3410 (3)0.47123 (9)0.0996 (9)
O40.6531 (3)0.3815 (2)0.45246 (7)0.0695 (6)
H4C0.62750.33130.47260.104*
U11U22U33U12U13U23
C10.0550 (16)0.0416 (15)0.0445 (14)−0.0047 (12)0.0007 (12)0.0048 (12)
C20.0646 (18)0.0438 (17)0.0606 (17)0.0055 (14)−0.0107 (14)−0.0019 (13)
C30.078 (2)0.0459 (17)0.0589 (17)−0.0006 (16)−0.0134 (16)−0.0092 (14)
N10.0640 (15)0.0536 (15)0.0433 (12)−0.0002 (12)−0.0078 (11)0.0003 (11)
C40.0624 (17)0.0485 (17)0.0509 (15)0.0066 (14)−0.0027 (14)0.0038 (13)
C50.0681 (18)0.0391 (15)0.0502 (15)0.0009 (14)−0.0005 (14)−0.0019 (12)
S10.0717 (5)0.0503 (5)0.0638 (5)−0.0141 (4)−0.0174 (4)0.0058 (4)
S20.0482 (4)0.0838 (6)0.0672 (5)−0.0068 (4)0.0036 (3)0.0218 (4)
C60.0386 (13)0.0557 (17)0.0447 (13)−0.0022 (12)−0.0055 (11)−0.0001 (12)
C70.0433 (15)0.0660 (19)0.0527 (16)0.0059 (14)−0.0033 (12)−0.0024 (14)
C80.0587 (17)0.0601 (19)0.0552 (16)0.0083 (15)−0.0144 (14)0.0001 (15)
N20.0612 (15)0.0606 (16)0.0477 (13)−0.0051 (13)−0.0106 (11)0.0067 (11)
C90.0489 (15)0.067 (2)0.0510 (15)−0.0048 (15)0.0008 (13)0.0040 (14)
C100.0434 (14)0.0571 (18)0.0551 (15)0.0022 (13)−0.0007 (12)0.0064 (14)
O10.118 (2)0.0680 (17)0.1053 (19)−0.0274 (15)−0.0499 (16)0.0421 (15)
O20.0698 (13)0.0577 (13)0.0589 (12)−0.0097 (11)−0.0244 (10)0.0090 (10)
C110.0612 (17)0.0465 (17)0.0495 (15)−0.0013 (14)−0.0059 (13)0.0043 (13)
C120.0509 (15)0.0405 (15)0.0435 (13)0.0004 (12)−0.0026 (12)−0.0027 (11)
C130.0570 (17)0.0544 (18)0.0507 (15)−0.0046 (14)0.0011 (13)0.0000 (13)
C140.0458 (15)0.071 (2)0.0634 (18)−0.0101 (15)−0.0001 (14)−0.0047 (16)
C150.0455 (15)0.072 (2)0.0526 (16)0.0031 (15)−0.0103 (13)−0.0050 (15)
C160.0452 (14)0.0530 (17)0.0408 (13)0.0033 (12)−0.0054 (11)−0.0026 (12)
C170.0446 (14)0.0447 (15)0.0449 (13)0.0002 (12)−0.0044 (11)−0.0011 (12)
C180.0541 (16)0.069 (2)0.0454 (15)0.0018 (15)−0.0095 (13)0.0063 (14)
O30.0644 (14)0.135 (2)0.0961 (18)0.0153 (16)−0.0159 (13)0.0616 (18)
O40.0580 (12)0.0864 (16)0.0624 (12)−0.0072 (11)−0.0107 (10)0.0307 (11)
C1—C51.380 (4)C9—H9A0.9300
C1—C21.380 (4)C10—H10A0.9300
C1—S11.771 (3)O1—C111.200 (3)
C2—C31.378 (4)O2—C111.302 (3)
C2—H2A0.9300O2—H2C0.9857
C3—N11.333 (4)C11—C121.497 (4)
C3—H3A0.9300C12—C171.387 (4)
N1—C41.333 (4)C12—C131.388 (4)
C4—C51.373 (4)C13—C141.379 (4)
C4—H4A0.9300C13—H13A0.9300
C5—H5A0.9300C14—C151.381 (4)
S1—S22.0248 (13)C14—H14A0.9300
S2—C61.766 (3)C15—C161.386 (4)
C6—C71.385 (4)C15—H15A0.9300
C6—C101.393 (3)C16—C171.395 (3)
C7—C81.376 (4)C16—C181.495 (4)
C7—H7A0.9300C17—H17A0.9300
C8—N21.338 (4)C18—O31.203 (3)
C8—H8A0.9300C18—O41.308 (3)
N2—C91.337 (4)O4—H4C0.8043
C9—C101.376 (4)
C5—C1—C2118.2 (3)C10—C9—H9A118.0
C5—C1—S1115.7 (2)C9—C10—C6118.1 (3)
C2—C1—S1126.0 (2)C9—C10—H10A120.9
C3—C2—C1118.5 (3)C6—C10—H10A120.9
C3—C2—H2A120.8C11—O2—H2C112.9
C1—C2—H2A120.8O1—C11—O2123.7 (3)
N1—C3—C2123.7 (3)O1—C11—C12122.7 (3)
N1—C3—H3A118.2O2—C11—C12113.5 (2)
C2—C3—H3A118.2C17—C12—C13119.4 (2)
C3—N1—C4117.3 (2)C17—C12—C11121.2 (2)
N1—C4—C5122.8 (3)C13—C12—C11119.5 (2)
N1—C4—H4A118.6C14—C13—C12120.1 (3)
C5—C4—H4A118.6C14—C13—H13A119.9
C4—C5—C1119.5 (3)C12—C13—H13A119.9
C4—C5—H5A120.2C13—C14—C15120.6 (3)
C1—C5—H5A120.2C13—C14—H14A119.7
C1—S1—S2105.44 (10)C15—C14—H14A119.7
C6—S2—S1106.08 (10)C14—C15—C16119.9 (3)
C7—C6—C10118.1 (3)C14—C15—H15A120.0
C7—C6—S2116.0 (2)C16—C15—H15A120.0
C10—C6—S2125.9 (2)C15—C16—C17119.5 (3)
C8—C7—C6119.7 (3)C15—C16—C18119.4 (2)
C8—C7—H7A120.2C17—C16—C18121.0 (2)
C6—C7—H7A120.2C12—C17—C16120.4 (2)
N2—C8—C7122.6 (3)C12—C17—H17A119.8
N2—C8—H8A118.7C16—C17—H17A119.8
C7—C8—H8A118.7O3—C18—O4123.4 (3)
C9—N2—C8117.4 (2)O3—C18—C16123.2 (3)
N2—C9—C10124.0 (3)O4—C18—C16113.4 (2)
N2—C9—H9A118.0C18—O4—H4C112.6
D—H···AD—HH···AD···AD—H···A
O2—H2C···N1i0.991.642.629 (3)175
O4—H4C···N2ii0.811.852.651 (3)176
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2C⋯N1i0.991.642.629 (3)175
O4—H4C⋯N2ii0.811.852.651 (3)176

Symmetry codes: (i) ; (ii) .

  2 in total

1.  Crystal engineering of coordination polymers using 4,4'-bipyridine as a bond between transition metal atoms.

Authors:  Kumar Biradha; Madhushree Sarkar; Lalit Rajput
Journal:  Chem Commun (Camb)       Date:  2006-08-16       Impact factor: 6.222

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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