| Literature DB >> 21583872 |
Dan-Jun Wang1, Jun-Ming Zhao, Jie Zhang, Jian-Li Lin.
Abstract
In the title 1:1 cocrystal, C(10)H(8)N(2)S(2)·C(8)H(6)O(4), the asymmetric unit contains an isophthalic acid mol-ecule and a 4,4'-dipyridyl disulfide mol-ecule. The two carboxyl groups of isophthalic acid inter-act with neighbouring 4,4'-dipyridyl disulfide mol-ecules through O-H⋯N hydrogen bonds, forming a one-dimensional zigzag chain. Neighbouring chains are linked to each other via π-π stacking inter-actions between the pyridyl rings of adjacent 4,4'-dipyridyl disulfide mol-ecules [centroid-centroid distance = 3.7346 (6) Å], resulting in a layered motif. The dihedral angle between pyridine rings of 84.13 (7)° and the C-S-S-C torsion angle of 91.95 (1)° confirm the gauche conformation of 4,4'-dipyridyl disulfide.Entities:
Year: 2009 PMID: 21583872 PMCID: PMC2977736 DOI: 10.1107/S1600536809013397
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H8N2S2·C8H6O4 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 16923 reflections |
| θ = 3.4–27.4° | |
| µ = 0.33 mm−1 | |
| β = 93.71 (3)° | Platelet, colorless |
| 0.29 × 0.20 × 0.11 mm | |
| Rigaku R-AXIS RAPID diffractometer | 4039 independent reflections |
| Radiation source: fine-focus sealed tube | 2330 reflections with |
| graphite | |
| Detector resolution: 0 pixels mm-1 | θmax = 27.4°, θmin = 3.4° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 16923 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 4039 reflections | (Δ/σ)max < 0.001 |
| 235 parameters | Δρmax = 0.30 e Å−3 |
| 0 restraints | Δρmin = −0.41 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.1566 (4) | 0.1783 (3) | 0.32831 (8) | 0.0472 (6) | |
| C2 | 0.1371 (5) | 0.0516 (3) | 0.31039 (10) | 0.0570 (7) | |
| H2A | 0.2419 | −0.0142 | 0.3187 | 0.068* | |
| C3 | −0.0411 (5) | 0.0247 (3) | 0.27995 (10) | 0.0616 (8) | |
| H3A | −0.0545 | −0.0611 | 0.2682 | 0.074* | |
| N1 | −0.1955 (4) | 0.1147 (2) | 0.26642 (7) | 0.0541 (6) | |
| C4 | −0.1742 (5) | 0.2369 (3) | 0.28378 (9) | 0.0542 (7) | |
| H4A | −0.2806 | 0.3011 | 0.2748 | 0.065* | |
| C5 | −0.0019 (5) | 0.2723 (3) | 0.31427 (9) | 0.0526 (7) | |
| H5A | 0.0079 | 0.3589 | 0.3254 | 0.063* | |
| S1 | 0.36292 (14) | 0.23223 (8) | 0.36981 (3) | 0.0629 (2) | |
| S2 | 0.59614 (12) | 0.08517 (9) | 0.37425 (3) | 0.0664 (3) | |
| C6 | 0.5151 (4) | −0.0234 (3) | 0.41697 (8) | 0.0467 (6) | |
| C7 | 0.6649 (4) | −0.1247 (3) | 0.42909 (9) | 0.0543 (7) | |
| H7A | 0.7977 | −0.1335 | 0.4146 | 0.065* | |
| C8 | 0.6162 (5) | −0.2124 (3) | 0.46265 (10) | 0.0588 (8) | |
| H8A | 0.7195 | −0.2791 | 0.4708 | 0.071* | |
| N2 | 0.4262 (4) | −0.2055 (3) | 0.48407 (7) | 0.0571 (6) | |
| C9 | 0.2814 (5) | −0.1082 (3) | 0.47191 (9) | 0.0558 (7) | |
| H9A | 0.1483 | −0.1031 | 0.4865 | 0.067* | |
| C10 | 0.3170 (4) | −0.0152 (3) | 0.43917 (9) | 0.0520 (7) | |
| H10A | 0.2119 | 0.0513 | 0.4321 | 0.062* | |
| O1 | 0.6473 (5) | 0.7527 (3) | 0.28620 (9) | 0.0996 (9) | |
| O2 | 0.5074 (3) | 0.5519 (2) | 0.29642 (6) | 0.0634 (6) | |
| H2C | 0.3967 | 0.5742 | 0.2715 | 0.095* | |
| C11 | 0.6474 (5) | 0.6489 (3) | 0.30626 (9) | 0.0528 (7) | |
| C12 | 0.8127 (4) | 0.6179 (3) | 0.34480 (8) | 0.0452 (6) | |
| C13 | 1.0212 (5) | 0.6802 (3) | 0.34736 (9) | 0.0541 (7) | |
| H13A | 1.0553 | 0.7426 | 0.3257 | 0.065* | |
| C14 | 1.1780 (5) | 0.6495 (3) | 0.38191 (10) | 0.0603 (8) | |
| H14A | 1.3179 | 0.6909 | 0.3833 | 0.072* | |
| C15 | 1.1292 (4) | 0.5580 (3) | 0.41451 (9) | 0.0574 (8) | |
| H15A | 1.2368 | 0.5368 | 0.4374 | 0.069* | |
| C16 | 0.9196 (4) | 0.4977 (3) | 0.41308 (8) | 0.0467 (6) | |
| C17 | 0.7617 (4) | 0.5277 (3) | 0.37792 (8) | 0.0451 (6) | |
| H17A | 0.6214 | 0.4868 | 0.3767 | 0.054* | |
| C18 | 0.8684 (5) | 0.3991 (3) | 0.44862 (9) | 0.0566 (7) | |
| O3 | 1.0115 (4) | 0.3410 (3) | 0.47123 (9) | 0.0996 (9) | |
| O4 | 0.6531 (3) | 0.3815 (2) | 0.45246 (7) | 0.0695 (6) | |
| H4C | 0.6275 | 0.3313 | 0.4726 | 0.104* |
| C1 | 0.0550 (16) | 0.0416 (15) | 0.0445 (14) | −0.0047 (12) | 0.0007 (12) | 0.0048 (12) |
| C2 | 0.0646 (18) | 0.0438 (17) | 0.0606 (17) | 0.0055 (14) | −0.0107 (14) | −0.0019 (13) |
| C3 | 0.078 (2) | 0.0459 (17) | 0.0589 (17) | −0.0006 (16) | −0.0134 (16) | −0.0092 (14) |
| N1 | 0.0640 (15) | 0.0536 (15) | 0.0433 (12) | −0.0002 (12) | −0.0078 (11) | 0.0003 (11) |
| C4 | 0.0624 (17) | 0.0485 (17) | 0.0509 (15) | 0.0066 (14) | −0.0027 (14) | 0.0038 (13) |
| C5 | 0.0681 (18) | 0.0391 (15) | 0.0502 (15) | 0.0009 (14) | −0.0005 (14) | −0.0019 (12) |
| S1 | 0.0717 (5) | 0.0503 (5) | 0.0638 (5) | −0.0141 (4) | −0.0174 (4) | 0.0058 (4) |
| S2 | 0.0482 (4) | 0.0838 (6) | 0.0672 (5) | −0.0068 (4) | 0.0036 (3) | 0.0218 (4) |
| C6 | 0.0386 (13) | 0.0557 (17) | 0.0447 (13) | −0.0022 (12) | −0.0055 (11) | −0.0001 (12) |
| C7 | 0.0433 (15) | 0.0660 (19) | 0.0527 (16) | 0.0059 (14) | −0.0033 (12) | −0.0024 (14) |
| C8 | 0.0587 (17) | 0.0601 (19) | 0.0552 (16) | 0.0083 (15) | −0.0144 (14) | 0.0001 (15) |
| N2 | 0.0612 (15) | 0.0606 (16) | 0.0477 (13) | −0.0051 (13) | −0.0106 (11) | 0.0067 (11) |
| C9 | 0.0489 (15) | 0.067 (2) | 0.0510 (15) | −0.0048 (15) | 0.0008 (13) | 0.0040 (14) |
| C10 | 0.0434 (14) | 0.0571 (18) | 0.0551 (15) | 0.0022 (13) | −0.0007 (12) | 0.0064 (14) |
| O1 | 0.118 (2) | 0.0680 (17) | 0.1053 (19) | −0.0274 (15) | −0.0499 (16) | 0.0421 (15) |
| O2 | 0.0698 (13) | 0.0577 (13) | 0.0589 (12) | −0.0097 (11) | −0.0244 (10) | 0.0090 (10) |
| C11 | 0.0612 (17) | 0.0465 (17) | 0.0495 (15) | −0.0013 (14) | −0.0059 (13) | 0.0043 (13) |
| C12 | 0.0509 (15) | 0.0405 (15) | 0.0435 (13) | 0.0004 (12) | −0.0026 (12) | −0.0027 (11) |
| C13 | 0.0570 (17) | 0.0544 (18) | 0.0507 (15) | −0.0046 (14) | 0.0011 (13) | 0.0000 (13) |
| C14 | 0.0458 (15) | 0.071 (2) | 0.0634 (18) | −0.0101 (15) | −0.0001 (14) | −0.0047 (16) |
| C15 | 0.0455 (15) | 0.072 (2) | 0.0526 (16) | 0.0031 (15) | −0.0103 (13) | −0.0050 (15) |
| C16 | 0.0452 (14) | 0.0530 (17) | 0.0408 (13) | 0.0033 (12) | −0.0054 (11) | −0.0026 (12) |
| C17 | 0.0446 (14) | 0.0447 (15) | 0.0449 (13) | 0.0002 (12) | −0.0044 (11) | −0.0011 (12) |
| C18 | 0.0541 (16) | 0.069 (2) | 0.0454 (15) | 0.0018 (15) | −0.0095 (13) | 0.0063 (14) |
| O3 | 0.0644 (14) | 0.135 (2) | 0.0961 (18) | 0.0153 (16) | −0.0159 (13) | 0.0616 (18) |
| O4 | 0.0580 (12) | 0.0864 (16) | 0.0624 (12) | −0.0072 (11) | −0.0107 (10) | 0.0307 (11) |
| C1—C5 | 1.380 (4) | C9—H9A | 0.9300 |
| C1—C2 | 1.380 (4) | C10—H10A | 0.9300 |
| C1—S1 | 1.771 (3) | O1—C11 | 1.200 (3) |
| C2—C3 | 1.378 (4) | O2—C11 | 1.302 (3) |
| C2—H2A | 0.9300 | O2—H2C | 0.9857 |
| C3—N1 | 1.333 (4) | C11—C12 | 1.497 (4) |
| C3—H3A | 0.9300 | C12—C17 | 1.387 (4) |
| N1—C4 | 1.333 (4) | C12—C13 | 1.388 (4) |
| C4—C5 | 1.373 (4) | C13—C14 | 1.379 (4) |
| C4—H4A | 0.9300 | C13—H13A | 0.9300 |
| C5—H5A | 0.9300 | C14—C15 | 1.381 (4) |
| S1—S2 | 2.0248 (13) | C14—H14A | 0.9300 |
| S2—C6 | 1.766 (3) | C15—C16 | 1.386 (4) |
| C6—C7 | 1.385 (4) | C15—H15A | 0.9300 |
| C6—C10 | 1.393 (3) | C16—C17 | 1.395 (3) |
| C7—C8 | 1.376 (4) | C16—C18 | 1.495 (4) |
| C7—H7A | 0.9300 | C17—H17A | 0.9300 |
| C8—N2 | 1.338 (4) | C18—O3 | 1.203 (3) |
| C8—H8A | 0.9300 | C18—O4 | 1.308 (3) |
| N2—C9 | 1.337 (4) | O4—H4C | 0.8043 |
| C9—C10 | 1.376 (4) | ||
| C5—C1—C2 | 118.2 (3) | C10—C9—H9A | 118.0 |
| C5—C1—S1 | 115.7 (2) | C9—C10—C6 | 118.1 (3) |
| C2—C1—S1 | 126.0 (2) | C9—C10—H10A | 120.9 |
| C3—C2—C1 | 118.5 (3) | C6—C10—H10A | 120.9 |
| C3—C2—H2A | 120.8 | C11—O2—H2C | 112.9 |
| C1—C2—H2A | 120.8 | O1—C11—O2 | 123.7 (3) |
| N1—C3—C2 | 123.7 (3) | O1—C11—C12 | 122.7 (3) |
| N1—C3—H3A | 118.2 | O2—C11—C12 | 113.5 (2) |
| C2—C3—H3A | 118.2 | C17—C12—C13 | 119.4 (2) |
| C3—N1—C4 | 117.3 (2) | C17—C12—C11 | 121.2 (2) |
| N1—C4—C5 | 122.8 (3) | C13—C12—C11 | 119.5 (2) |
| N1—C4—H4A | 118.6 | C14—C13—C12 | 120.1 (3) |
| C5—C4—H4A | 118.6 | C14—C13—H13A | 119.9 |
| C4—C5—C1 | 119.5 (3) | C12—C13—H13A | 119.9 |
| C4—C5—H5A | 120.2 | C13—C14—C15 | 120.6 (3) |
| C1—C5—H5A | 120.2 | C13—C14—H14A | 119.7 |
| C1—S1—S2 | 105.44 (10) | C15—C14—H14A | 119.7 |
| C6—S2—S1 | 106.08 (10) | C14—C15—C16 | 119.9 (3) |
| C7—C6—C10 | 118.1 (3) | C14—C15—H15A | 120.0 |
| C7—C6—S2 | 116.0 (2) | C16—C15—H15A | 120.0 |
| C10—C6—S2 | 125.9 (2) | C15—C16—C17 | 119.5 (3) |
| C8—C7—C6 | 119.7 (3) | C15—C16—C18 | 119.4 (2) |
| C8—C7—H7A | 120.2 | C17—C16—C18 | 121.0 (2) |
| C6—C7—H7A | 120.2 | C12—C17—C16 | 120.4 (2) |
| N2—C8—C7 | 122.6 (3) | C12—C17—H17A | 119.8 |
| N2—C8—H8A | 118.7 | C16—C17—H17A | 119.8 |
| C7—C8—H8A | 118.7 | O3—C18—O4 | 123.4 (3) |
| C9—N2—C8 | 117.4 (2) | O3—C18—C16 | 123.2 (3) |
| N2—C9—C10 | 124.0 (3) | O4—C18—C16 | 113.4 (2) |
| N2—C9—H9A | 118.0 | C18—O4—H4C | 112.6 |
| H··· | ||||
| O2—H2C···N1i | 0.99 | 1.64 | 2.629 (3) | 175 |
| O4—H4C···N2ii | 0.81 | 1.85 | 2.651 (3) | 176 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2—H2 | 0.99 | 1.64 | 2.629 (3) | 175 |
| O4—H4 | 0.81 | 1.85 | 2.651 (3) | 176 |
Symmetry codes: (i) ; (ii) .