| Literature DB >> 21583870 |
N Hammond, P Carvalho, Y Wu, M A Avery.
Abstract
The title compound, C(12)H(6)N(4)O(8), is a biphenyl system that was synthesized as a building block for a new series of anti-malarial compounds. The aromatic rings are oriented at a dihedral angle of 45.5 (2)°, and inter-molecular short O⋯O contacts form a chain along the b axis. The strength of the inter-actions involved in this chain cause one of the rings to be slightly distorted, with the torsion angle between the nitro groups being 23.4 (2)°, whereas, in the other ring, both nitro systems are parallel, forming an angle of 9.6 (2)° with the plane of the aromatic ring to which they are bound. Furthermore, the three ring C atoms around the ring-ring linkage belong to a plane inclined by 4.5 (1)° in relation to the plane containing the other three C atoms, i.e. (NO(2)-)C-C-C(NO(2)). This distortion of the ring causes uncommonly short intermolecular O⋯O [3.038 (2) Å] and O⋯C [3.000 (4) and 3.214 (1) Å] contacts.Entities:
Year: 2009 PMID: 21583870 PMCID: PMC2977734 DOI: 10.1107/S1600536809011088
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H6N4O8 | |
| Melting point: not measured K | |
| Orthorhombic, | Cu |
| Hall symbol: -P 2ac 2ab | Cell parameters from 9828 reflections |
| θ = 3.9–67.6° | |
| µ = 1.32 mm−1 | |
| Block, yellow | |
| 0.18 × 0.15 × 0.11 mm | |
| Bruker APEXII CCD diffractometer | 2294 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 68.0°, θmin = 5.4° |
| φ and ω scans | |
| 30954 measured reflections | |
| 2315 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2315 reflections | (Δ/σ)max < 0.001 |
| 225 parameters | Δρmax = 0.22 e Å−3 |
| 0 restraints | Δρmin = −0.31 e Å−3 |
| 0 constraints |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.34665 (12) | 0.30780 (8) | 0.43269 (7) | 0.0157 (3) | |
| C2 | 0.33233 (12) | 0.30138 (8) | 0.51737 (7) | 0.0156 (3) | |
| H2 | 0.2894 | 0.3448 | 0.5466 | 0.019* | |
| C3 | 0.38272 (12) | 0.22966 (8) | 0.55741 (7) | 0.0162 (3) | |
| C4 | 0.44841 (12) | 0.16333 (8) | 0.51778 (8) | 0.0168 (3) | |
| H4 | 0.4828 | 0.1160 | 0.5458 | 0.020* | |
| C5 | 0.45990 (12) | 0.17162 (8) | 0.43369 (8) | 0.0165 (3) | |
| C6 | 0.41093 (12) | 0.24155 (8) | 0.39006 (7) | 0.0162 (3) | |
| H6 | 0.4206 | 0.2443 | 0.3335 | 0.019* | |
| N1 | 0.37026 (10) | 0.22503 (7) | 0.64699 (6) | 0.0182 (2) | |
| N2 | 0.52978 (10) | 0.10245 (7) | 0.38839 (7) | 0.0189 (2) | |
| O1 | 0.30268 (11) | 0.28031 (6) | 0.68111 (5) | 0.0259 (2) | |
| O2 | 0.42893 (10) | 0.16675 (6) | 0.68273 (5) | 0.0236 (2) | |
| O3 | 0.58781 (10) | 0.04674 (6) | 0.42849 (6) | 0.0276 (2) | |
| O4 | 0.52572 (10) | 0.10442 (6) | 0.31365 (6) | 0.0253 (2) | |
| C1' | 0.30389 (12) | 0.38719 (8) | 0.38844 (7) | 0.0155 (3) | |
| C2' | 0.33837 (12) | 0.46789 (8) | 0.42007 (7) | 0.0162 (3) | |
| H2' | 0.3828 (15) | 0.4741 (10) | 0.4712 (9) | 0.018 (4)* | |
| C3' | 0.31428 (12) | 0.54092 (8) | 0.37355 (7) | 0.0156 (3) | |
| C4' | 0.25353 (12) | 0.53897 (8) | 0.29759 (7) | 0.0159 (3) | |
| H4' | 0.2391 (15) | 0.5895 (9) | 0.2666 (9) | 0.018 (4)* | |
| C5' | 0.21448 (12) | 0.45823 (8) | 0.27031 (7) | 0.0160 (3) | |
| C6' | 0.23899 (12) | 0.38234 (8) | 0.31302 (7) | 0.0161 (3) | |
| H6' | 0.2127 | 0.3292 | 0.2918 | 0.019* | |
| N1' | 0.36202 (10) | 0.62466 (7) | 0.40437 (6) | 0.0169 (2) | |
| N2' | 0.14792 (10) | 0.45304 (7) | 0.18984 (6) | 0.0177 (2) | |
| O1' | 0.38516 (9) | 0.63076 (6) | 0.47790 (5) | 0.0231 (2) | |
| O2' | 0.37639 (9) | 0.68355 (6) | 0.35486 (6) | 0.0212 (2) | |
| O3' | 0.12418 (9) | 0.52096 (6) | 0.15399 (5) | 0.0233 (2) | |
| O4' | 0.12047 (10) | 0.38108 (6) | 0.16341 (6) | 0.0246 (2) |
| C1 | 0.0138 (6) | 0.0161 (6) | 0.0173 (6) | −0.0029 (5) | −0.0013 (4) | 0.0007 (5) |
| C2 | 0.0155 (6) | 0.0143 (6) | 0.0171 (6) | −0.0015 (5) | 0.0002 (5) | −0.0013 (5) |
| C3 | 0.0170 (6) | 0.0179 (6) | 0.0137 (6) | −0.0044 (5) | −0.0009 (4) | 0.0009 (5) |
| C4 | 0.0162 (6) | 0.0149 (6) | 0.0193 (6) | −0.0018 (5) | −0.0024 (5) | 0.0028 (5) |
| C5 | 0.0148 (6) | 0.0154 (6) | 0.0192 (6) | −0.0021 (5) | 0.0010 (5) | −0.0025 (5) |
| C6 | 0.0163 (6) | 0.0183 (6) | 0.0140 (6) | −0.0035 (5) | −0.0005 (4) | −0.0003 (5) |
| N1 | 0.0214 (5) | 0.0174 (5) | 0.0158 (5) | −0.0039 (4) | 0.0003 (4) | 0.0015 (4) |
| N2 | 0.0167 (5) | 0.0169 (5) | 0.0230 (6) | −0.0012 (4) | 0.0017 (4) | −0.0019 (4) |
| O1 | 0.0409 (6) | 0.0193 (5) | 0.0175 (5) | 0.0015 (4) | 0.0061 (4) | −0.0017 (4) |
| O2 | 0.0248 (5) | 0.0269 (5) | 0.0191 (5) | 0.0004 (4) | −0.0015 (4) | 0.0084 (4) |
| O3 | 0.0309 (5) | 0.0200 (5) | 0.0320 (5) | 0.0079 (4) | 0.0017 (4) | 0.0022 (4) |
| O4 | 0.0263 (5) | 0.0304 (5) | 0.0193 (5) | 0.0025 (4) | 0.0033 (4) | −0.0057 (4) |
| C1' | 0.0137 (6) | 0.0173 (6) | 0.0155 (6) | 0.0000 (4) | 0.0026 (4) | 0.0011 (5) |
| C2' | 0.0146 (6) | 0.0194 (6) | 0.0147 (6) | 0.0005 (5) | 0.0003 (5) | 0.0008 (5) |
| C3' | 0.0138 (6) | 0.0154 (6) | 0.0177 (6) | −0.0008 (4) | 0.0017 (5) | −0.0011 (5) |
| C4' | 0.0138 (5) | 0.0173 (6) | 0.0166 (6) | 0.0018 (5) | 0.0024 (5) | 0.0030 (5) |
| C5' | 0.0133 (6) | 0.0206 (6) | 0.0141 (6) | 0.0006 (5) | 0.0001 (4) | 0.0007 (5) |
| C6' | 0.0154 (6) | 0.0164 (6) | 0.0165 (6) | −0.0005 (5) | 0.0021 (5) | −0.0004 (5) |
| N1' | 0.0144 (5) | 0.0172 (5) | 0.0192 (5) | 0.0008 (4) | −0.0004 (4) | 0.0003 (4) |
| N2' | 0.0165 (5) | 0.0211 (5) | 0.0155 (5) | 0.0003 (4) | −0.0004 (4) | 0.0013 (4) |
| O1' | 0.0283 (5) | 0.0236 (5) | 0.0175 (5) | −0.0042 (4) | −0.0031 (4) | −0.0022 (4) |
| O2' | 0.0246 (5) | 0.0154 (4) | 0.0236 (5) | −0.0015 (4) | −0.0009 (4) | 0.0042 (4) |
| O3' | 0.0274 (5) | 0.0222 (5) | 0.0205 (5) | 0.0013 (4) | −0.0059 (4) | 0.0063 (4) |
| O4' | 0.0314 (5) | 0.0213 (5) | 0.0210 (5) | −0.0028 (4) | −0.0074 (4) | −0.0024 (4) |
| C1—C1' | 1.4885 (17) | C5'—N2' | 1.4783 (16) |
| C1'—C2' | 1.3947 (17) | C5—N2 | 1.4790 (16) |
| C1'—C6' | 1.3971 (18) | C6—C1 | 1.3978 (17) |
| C2—C1 | 1.3950 (17) | C6—C5 | 1.3860 (17) |
| C2—C3 | 1.3842 (17) | C6—H6 | 0.9300 |
| C2—H2 | 0.9300 | C6'—H6' | 0.9300 |
| C2'—H2' | 0.953 (15) | N1'—C3' | 1.4702 (15) |
| C3'—C2' | 1.3828 (17) | N1—O1 | 1.2266 (14) |
| C3—C4 | 1.3816 (18) | N1'—O1' | 1.2278 (14) |
| C3—N1 | 1.4712 (15) | N1—O2 | 1.2257 (14) |
| C4'—C3' | 1.3843 (17) | N1'—O2' | 1.2268 (14) |
| C4—H4 | 0.9300 | N2'—O3' | 1.2263 (14) |
| C4'—H4' | 0.942 (15) | N2—O3 | 1.2301 (14) |
| C5'—C4' | 1.3828 (17) | N2—O4 | 1.2226 (15) |
| C5—C4 | 1.3851 (18) | N2'—O4' | 1.2252 (14) |
| C5'—C6' | 1.3876 (17) | ||
| C1—C2—H2 | 120.4 | C4—C5—N2 | 118.00 (11) |
| C1'—C2'—H2' | 122.1 (9) | C5'—C4'—C3' | 115.76 (11) |
| C1'—C6'—H6' | 120.6 | C5—C4—H4 | 122.1 |
| C1—C6—H6 | 120.7 | C5'—C4'—H4' | 122.1 (9) |
| C2'—C1'—C1 | 119.08 (11) | C5—C6—C1 | 118.69 (11) |
| C2—C1—C1' | 120.71 (11) | C5'—C6'—C1' | 118.79 (11) |
| C2—C1—C6 | 119.36 (11) | C5'—C6'—H6' | 120.6 |
| C2'—C1'—C6' | 119.44 (11) | C5—C6—H6 | 120.7 |
| C2'—C3'—C4' | 123.55 (11) | C6—C1—C1' | 119.75 (11) |
| C2'—C3'—N1' | 118.27 (11) | C6'—C1'—C1 | 121.31 (11) |
| C2—C3—N1 | 118.57 (11) | C6—C5—N2 | 118.42 (11) |
| C3'—C2'—C1' | 118.90 (11) | C6'—C5'—N2' | 118.84 (11) |
| C3—C2—C1 | 119.21 (11) | O1'—N1'—C3' | 117.71 (10) |
| C3'—C2'—H2' | 118.9 (9) | O1—N1—C3 | 117.76 (10) |
| C3—C2—H2 | 120.4 | O2'—N1'—C3' | 117.81 (10) |
| C3—C4—C5 | 115.88 (11) | O2—N1—C3 | 117.96 (10) |
| C3—C4—H4 | 122.1 | O2—N1—O1 | 124.27 (10) |
| C3'—C4'—H4' | 122.2 (9) | O2'—N1'—O1' | 124.48 (11) |
| C4—C3—C2 | 123.28 (11) | O3—N2—C5 | 117.76 (10) |
| C4'—C3'—N1' | 118.09 (10) | O3'—N2'—C5' | 117.84 (10) |
| C4—C3—N1 | 118.11 (11) | O4'—N2'—C5' | 117.72 (10) |
| C4'—C5'—C6' | 123.42 (11) | O4—N2—C5 | 117.79 (10) |
| C4—C5—C6 | 123.57 (11) | O4'—N2'—O3' | 124.44 (10) |
| C4'—C5'—N2' | 117.70 (10) | O4—N2—O3 | 124.45 (11) |
| C1—C1'—C2'—C3' | 171.43 (11) | C5'—C4'—C3'—C2' | 1.28 (18) |
| C1—C1'—C6'—C5' | −172.98 (11) | C5'—C4'—C3'—N1' | 177.92 (10) |
| C1—C2—C3—C4 | 0.57 (18) | C5—C6—C1—C1' | 174.55 (11) |
| C1—C2—C3—N1 | 178.25 (11) | C5—C6—C1—C2 | −0.67 (17) |
| C1—C6—C5—C4 | 0.20 (18) | C6—C1—C1'—C2' | −129.65 (12) |
| C1—C6—C5—N2 | −178.99 (10) | C6—C1—C1'—C6' | 45.44 (17) |
| C2—C1—C1'—C2' | 45.51 (17) | C6'—C1'—C2'—C3' | −3.76 (18) |
| C2—C1—C1'—C6' | −139.40 (12) | C6—C5—C4—C3 | 0.62 (18) |
| C2'—C1'—C6'—C5' | 2.09 (18) | C6'—C5'—C4'—C3' | −3.07 (18) |
| C2—C3—C4—C5 | −1.01 (18) | C6—C5—N2—O3 | 170.62 (11) |
| C2—C3—N1—O1 | 7.99 (17) | C6'—C5'—N2'—O3' | 178.23 (11) |
| C2—C3—N1—O2 | −171.36 (11) | C6'—C5'—N2'—O4' | −1.94 (17) |
| C3—C2—C1—C1' | −174.87 (11) | C6—C5—N2—O4 | −9.53 (16) |
| C3—C2—C1—C6 | 0.31 (18) | N1'—C3'—C2'—C1' | −174.56 (11) |
| C4'—C3'—C2'—C1' | 2.08 (19) | N1—C3—C4—C5 | −178.70 (10) |
| C4—C3—N1—O1 | −174.20 (11) | N2'—C5'—C4'—C3' | 179.39 (10) |
| C4—C3—N1—O2 | 6.44 (16) | N2—C5—C4—C3 | 179.81 (10) |
| C4'—C5'—C6'—C1' | 1.44 (19) | N2'—C5'—C6'—C1' | 178.95 (10) |
| C4'—C5'—N2'—O3' | −4.12 (16) | O1'—N1'—C3'—C2' | −20.79 (16) |
| C4—C5—N2—O3 | −8.62 (16) | O1'—N1'—C3'—C4' | 162.39 (11) |
| C4—C5—N2—O4 | 171.23 (11) | O2'—N1'—C3'—C2' | 158.99 (11) |
| C4'—C5'—N2'—O4' | 175.71 (11) | O2'—N1'—C3'—C4' | −17.83 (16) |