Literature DB >> 21583819

[μ-N,N,N',N'-Tetra-kis(diphenyl-phosphino-meth-yl)benzene-1,4-diamine-κP,P':P'',P''']bis-[bis-(nitrato-κO)palladium(II)].

Xuan-Feng Jiang1, Heng-Chi Lian, Zhong Min, Xiu-Jian Wang, Jia-Huang Lin.   

Abstract

The asymmetric unit of the title complex, [Pd(2)(NO(3))(4)(C(58)H(52)N(2)P(4))], contains one half-mol-ecule, in which the central benzene ring is located on a crystallographic centre of inversion. The Pd atom has a distorted square-planar coordination consisting of two P and two O atoms. In the crystal structure, inter-molecular C-H⋯O inter-actions link the mol-ecules into chains, and π-π contacts between the phenyl rings [centroid-centroid distance = 3.928 (3) Å] may further stabilize the structure.

Entities:  

Year:  2009        PMID: 21583819      PMCID: PMC2977633          DOI: 10.1107/S160053680901486X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Aucott et al. (2002 ▶); Ganesamoorthy et al. (2008 ▶); Wang et al. (2008 ▶). For bond-length data, see: Allen et al. (1987 ▶). For ring-puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

[Pd2(NO3)4(C58H52N2P4)] M = 1361.74 Monoclinic, a = 8.0715 (2) Å b = 21.3419 (7) Å c = 16.0283 (5) Å β = 92.937 (3)° V = 2757.43 (14) Å3 Z = 2 Mo Kα radiation μ = 0.84 mm−1 T = 294 K 0.40 × 0.15 × 0.15 mm

Data collection

Oxford Diffraction Gemini S Untra diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007 ▶) T min = 0.773, T max = 0.882 13871 measured reflections 6838 independent reflections 3511 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.072 S = 0.80 6838 reflections 370 parameters H-atom parameters constrained Δρmax = 1.04 e Å−3 Δρmin = −0.37 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2007 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680901486X/hk2653sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680901486X/hk2653Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Pd2(NO3)4(C58H52N2P4)]F(000) = 1380
Mr = 1361.74Dx = 1.640 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4249 reflections
a = 8.0715 (2) Åθ = 11.3–28.6°
b = 21.3419 (7) ŵ = 0.84 mm1
c = 16.0283 (5) ÅT = 294 K
β = 92.937 (3)°Block, yellow
V = 2757.43 (14) Å30.4 × 0.15 × 0.15 mm
Z = 2
Gemini S Untra diffractometer6838 independent reflections
Radiation source: Enhance (Mo) X-ray Source3511 reflections with I > 2σ(I)
graphiteRint = 0.035
Detector resolution: 16.0855 pixels mm-1θmax = 30.2°, θmin = 2.8°
ω scansh = −11→9
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007)k = −28→27
Tmin = 0.773, Tmax = 0.882l = −22→21
13871 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.072H-atom parameters constrained
S = 0.80w = 1/[σ2(Fo2) + (0.0313P)2] where P = (Fo2 + 2Fc2)/3
6838 reflections(Δ/σ)max = 0.004
370 parametersΔρmax = 1.04 e Å3
0 restraintsΔρmin = −0.37 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Pd11.39486 (3)1.789182 (12)0.214196 (13)0.02504 (8)
P11.22599 (9)1.78487 (4)0.10059 (4)0.02366 (18)
P21.30017 (9)1.88209 (4)0.24940 (5)0.02471 (19)
O11.4811 (3)1.60188 (12)0.22173 (15)0.0613 (8)
O21.3721 (3)1.67330 (12)0.29761 (14)0.0461 (6)
O31.4938 (2)1.69934 (10)0.18353 (12)0.0311 (5)
O41.8332 (3)1.83114 (12)0.33338 (14)0.0518 (7)
O51.7301 (3)1.81444 (13)0.20792 (14)0.0486 (7)
O61.5755 (2)1.80091 (10)0.31524 (11)0.0298 (5)
N11.0910 (3)1.90013 (12)0.11125 (14)0.0271 (6)
N21.4459 (3)1.65651 (15)0.23480 (18)0.0391 (7)
N31.7185 (3)1.81587 (13)0.28399 (18)0.0372 (7)
C10.9830 (3)1.93941 (14)−0.02623 (17)0.0299 (8)
H1A0.97291.8985−0.04570.036*
C21.0433 (3)1.94993 (14)0.05573 (16)0.0240 (7)
C31.0617 (3)2.01198 (14)0.07878 (18)0.0286 (8)
H3A1.10612.02120.13200.034*
C41.0437 (3)1.83578 (14)0.09201 (17)0.0264 (7)
H4A0.99361.83350.03580.032*
H4B0.96241.82170.13040.032*
C51.3384 (3)1.80561 (14)0.00986 (17)0.0264 (7)
C61.5000 (4)1.82739 (15)0.0189 (2)0.0352 (8)
H6A1.55271.83040.07170.042*
C71.5828 (4)1.84462 (17)−0.0511 (2)0.0417 (9)
H7A1.69161.8589−0.04510.050*
C81.5067 (4)1.84081 (16)−0.1282 (2)0.0390 (8)
H8A1.56371.8523−0.17480.047*
C91.3461 (4)1.82008 (16)−0.1380 (2)0.0378 (9)
H9A1.29451.8180−0.19110.045*
C101.2609 (4)1.80238 (15)−0.06993 (18)0.0321 (8)
H10A1.15201.7883−0.07690.039*
C111.1447 (3)1.70636 (15)0.08770 (17)0.0249 (7)
C121.2026 (4)1.66574 (15)0.02931 (19)0.0305 (8)
H12A1.27941.6793−0.00810.037*
C131.1461 (5)1.60480 (16)0.0265 (2)0.0422 (9)
H13A1.18481.5774−0.01320.051*
C141.0363 (4)1.58451 (16)0.0802 (2)0.0438 (9)
H14A0.99991.54320.07760.053*
C150.9767 (5)1.62465 (18)0.1396 (2)0.0497 (10)
H15A0.89981.61040.17650.060*
C161.0314 (4)1.68549 (16)0.1437 (2)0.0387 (9)
H16A0.99281.71260.18390.046*
C171.1050 (3)1.91098 (15)0.20009 (16)0.0267 (7)
H17A1.01311.89060.22580.032*
H17B1.09631.95560.21050.032*
C181.4595 (4)1.93885 (15)0.23045 (18)0.0279 (7)
C191.4731 (4)1.96391 (15)0.15109 (19)0.0353 (8)
H19A1.39391.95450.10880.042*
C201.6040 (4)2.00260 (17)0.1352 (2)0.0411 (9)
H20A1.61232.01960.08220.049*
C211.7229 (4)2.01633 (16)0.1973 (2)0.0404 (9)
H21A1.81052.04290.18630.048*
C221.7118 (4)1.99062 (17)0.2755 (2)0.0398 (9)
H22A1.79261.99950.31720.048*
C231.5816 (4)1.95192 (15)0.29200 (19)0.0348 (8)
H23A1.57521.93440.34480.042*
C241.2525 (3)1.88447 (15)0.35784 (17)0.0258 (7)
C251.2340 (4)1.83006 (16)0.40314 (18)0.0320 (8)
H25A1.26171.79170.38020.038*
C261.1751 (4)1.83253 (18)0.4817 (2)0.0410 (9)
H26A1.16231.79570.51170.049*
C271.1346 (4)1.8891 (2)0.5166 (2)0.0490 (10)
H27A1.09321.89030.56960.059*
C281.1551 (4)1.9432 (2)0.4734 (2)0.0479 (10)
H28A1.13011.98140.49760.058*
C291.2133 (4)1.94164 (17)0.39349 (19)0.0374 (8)
H29A1.22601.97870.36390.045*
U11U22U33U12U13U23
Pd10.02445 (13)0.02725 (13)0.02345 (13)0.00320 (13)0.00145 (9)0.00167 (13)
P10.0258 (4)0.0238 (4)0.0215 (4)0.0005 (4)0.0019 (3)0.0011 (4)
P20.0240 (4)0.0260 (5)0.0242 (4)0.0002 (4)0.0017 (3)0.0016 (4)
O10.092 (2)0.0341 (16)0.0588 (17)0.0263 (16)0.0099 (14)0.0110 (14)
O20.0473 (15)0.0508 (17)0.0411 (15)0.0053 (13)0.0123 (12)0.0066 (13)
O30.0336 (12)0.0306 (13)0.0294 (12)0.0073 (11)0.0068 (9)0.0021 (11)
O40.0329 (14)0.0729 (19)0.0481 (15)−0.0094 (14)−0.0126 (11)0.0088 (14)
O50.0395 (14)0.078 (2)0.0293 (13)−0.0059 (14)0.0083 (10)0.0091 (13)
O60.0195 (11)0.0434 (15)0.0266 (11)0.0012 (11)0.0019 (8)0.0020 (10)
N10.0311 (15)0.0222 (14)0.0275 (14)0.0011 (13)−0.0017 (11)−0.0015 (12)
N20.0383 (17)0.044 (2)0.0356 (18)0.0165 (16)0.0058 (13)0.0134 (17)
N30.0301 (17)0.0392 (17)0.0421 (18)0.0000 (14)−0.0012 (14)0.0075 (15)
C10.0334 (18)0.0218 (17)0.0339 (18)0.0022 (15)−0.0028 (14)−0.0037 (15)
C20.0243 (17)0.0253 (17)0.0226 (17)0.0047 (15)0.0042 (13)0.0035 (15)
C30.0331 (18)0.0288 (19)0.0235 (16)0.0015 (16)−0.0044 (13)−0.0022 (15)
C40.0241 (17)0.0296 (18)0.0258 (17)0.0001 (15)0.0036 (13)0.0042 (15)
C50.0266 (17)0.0259 (18)0.0268 (17)0.0001 (14)0.0038 (13)0.0016 (14)
C60.035 (2)0.035 (2)0.0363 (19)0.0006 (18)0.0026 (15)0.0065 (17)
C70.035 (2)0.050 (2)0.040 (2)−0.0088 (19)0.0065 (16)0.0088 (19)
C80.042 (2)0.044 (2)0.0331 (19)−0.0032 (19)0.0169 (15)0.0040 (17)
C90.048 (2)0.034 (2)0.0313 (19)0.0001 (19)0.0014 (16)0.0023 (17)
C100.0289 (17)0.036 (2)0.0320 (18)−0.0045 (16)0.0041 (14)0.0015 (16)
C110.0276 (17)0.0246 (17)0.0222 (15)0.0014 (16)−0.0017 (13)0.0026 (16)
C120.0293 (18)0.0280 (19)0.0346 (18)0.0013 (16)0.0043 (14)0.0048 (17)
C130.063 (3)0.024 (2)0.039 (2)0.0072 (19)0.0000 (18)−0.0046 (18)
C140.064 (3)0.0213 (19)0.045 (2)−0.0073 (19)−0.0067 (19)0.0044 (18)
C150.066 (3)0.043 (2)0.042 (2)−0.018 (2)0.0138 (18)0.008 (2)
C160.049 (2)0.032 (2)0.035 (2)−0.0066 (18)0.0085 (16)0.0010 (17)
C170.0216 (16)0.0277 (18)0.0310 (18)0.0059 (15)0.0035 (13)0.0050 (15)
C180.0253 (17)0.0257 (18)0.0328 (18)0.0046 (15)0.0016 (13)−0.0034 (15)
C190.0320 (19)0.033 (2)0.041 (2)−0.0028 (17)0.0057 (15)0.0012 (17)
C200.038 (2)0.041 (2)0.045 (2)0.0015 (19)0.0106 (16)0.0052 (18)
C210.037 (2)0.029 (2)0.056 (2)−0.0055 (17)0.0153 (17)−0.0056 (19)
C220.0274 (19)0.039 (2)0.054 (2)−0.0034 (17)0.0044 (15)−0.0153 (19)
C230.040 (2)0.034 (2)0.0301 (18)0.0011 (17)0.0053 (15)−0.0023 (17)
C240.0182 (16)0.0330 (19)0.0260 (16)−0.0040 (15)0.0005 (12)0.0046 (16)
C250.0304 (18)0.039 (2)0.0266 (18)−0.0057 (17)0.0020 (14)−0.0024 (17)
C260.042 (2)0.048 (3)0.032 (2)−0.017 (2)0.0028 (16)0.0041 (19)
C270.044 (2)0.072 (3)0.032 (2)−0.018 (2)0.0144 (16)−0.014 (2)
C280.044 (2)0.055 (3)0.046 (2)−0.002 (2)0.0145 (17)−0.013 (2)
C290.038 (2)0.039 (2)0.036 (2)−0.0014 (18)0.0014 (15)0.0011 (18)
Pd1—P12.2198 (7)C10—H10A0.9300
Pd1—P22.2087 (9)C11—C121.375 (4)
Pd1—O32.144 (2)C11—C161.388 (4)
Pd1—O62.1377 (17)C12—C131.378 (4)
P1—C41.829 (3)C12—H12A0.9300
P1—C51.808 (3)C13—C141.338 (5)
P1—C111.807 (3)C13—H13A0.9300
P2—C171.833 (3)C14—C151.385 (5)
P2—C181.803 (3)C14—H14A0.9300
P2—C241.800 (3)C15—C161.372 (5)
O1—N21.221 (4)C15—H15A0.9300
O2—N21.248 (3)C16—H16A0.9300
O3—N21.301 (3)C17—H17A0.9700
O4—N31.231 (3)C17—H17B0.9700
O5—N31.228 (3)C18—C191.389 (4)
O6—N31.320 (3)C18—C231.387 (4)
N1—C21.426 (3)C19—C201.375 (4)
N1—C41.454 (4)C19—H19A0.9300
N1—C171.441 (3)C20—C211.378 (4)
C1—C21.396 (4)C20—H20A0.9300
C1—C3i1.373 (4)C21—C221.376 (4)
C1—H1A0.9300C21—H21A0.9300
C2—C31.381 (4)C22—C231.373 (4)
C3—C1i1.373 (4)C22—H22A0.9300
C3—H3A0.9300C23—H23A0.9300
C4—H4A0.9700C24—C251.381 (4)
C4—H4B0.9700C24—C291.391 (4)
C5—C61.386 (4)C25—C261.370 (4)
C5—C101.396 (4)C25—H25A0.9300
C6—C71.384 (4)C26—C271.376 (5)
C6—H6A0.9300C26—H26A0.9300
C7—C81.354 (4)C27—C281.360 (5)
C7—H7A0.9300C27—H27A0.9300
C8—C91.371 (4)C28—C291.387 (4)
C8—H8A0.9300C28—H28A0.9300
C9—C101.372 (4)C29—H29A0.9300
C9—H9A0.9300
P2—Pd1—P192.34 (3)C9—C10—H10A120.2
O3—Pd1—P189.72 (5)C12—C11—P1121.9 (2)
O3—Pd1—P2177.92 (5)C12—C11—C16119.8 (3)
O3—Pd1—O691.77 (8)C16—C11—P1118.1 (2)
O6—Pd1—P1173.04 (6)C11—C12—C13119.6 (3)
O6—Pd1—P286.15 (6)C11—C12—H12A120.2
C4—P1—Pd1119.67 (10)C13—C12—H12A120.2
C5—P1—Pd1109.72 (9)C12—C13—H13A119.5
C5—P1—C4103.24 (13)C14—C13—C12120.9 (3)
C11—P1—Pd1109.65 (9)C14—C13—H13A119.5
C11—P1—C4104.84 (13)C13—C14—C15120.4 (3)
C11—P1—C5109.21 (14)C13—C14—H14A119.8
C17—P2—Pd1119.53 (10)C15—C14—H14A119.8
C18—P2—Pd1107.51 (10)C14—C15—H15A120.1
C18—P2—C17107.81 (14)C16—C15—C14119.8 (3)
C24—P2—Pd1111.46 (11)C16—C15—H15A120.1
C24—P2—C17100.67 (13)C11—C16—H16A120.2
C24—P2—C18109.47 (14)C15—C16—C11119.6 (3)
N2—O3—Pd1110.94 (18)C15—C16—H16A120.2
N3—O6—Pd1108.45 (16)P2—C17—H17A108.9
C2—N1—C4120.8 (2)P2—C17—H17B108.9
C2—N1—C17120.1 (2)N1—C17—P2113.2 (2)
C17—N1—C4111.6 (2)N1—C17—H17A108.9
O1—N2—O2122.5 (3)N1—C17—H17B108.9
O1—N2—O3118.9 (3)H17A—C17—H17B107.7
O2—N2—O3118.5 (3)C19—C18—P2120.2 (2)
O4—N3—O5123.5 (3)C23—C18—P2120.1 (2)
O4—N3—O6117.6 (3)C23—C18—C19119.1 (3)
O5—N3—O6118.9 (2)C18—C19—H19A120.0
C2—C1—H1A119.2C20—C19—C18119.9 (3)
C3i—C1—C2121.6 (3)C20—C19—H19A120.0
C3i—C1—H1A119.2C19—C20—C21120.5 (3)
C1—C2—N1122.5 (3)C19—C20—H20A119.8
C3—C2—C1115.7 (3)C21—C20—H20A119.8
C3—C2—N1121.7 (2)C20—C21—H21A120.1
C1i—C3—C2122.6 (3)C22—C21—C20119.8 (3)
C1i—C3—H3A118.7C22—C21—H21A120.1
C2—C3—H3A118.7C21—C22—H22A119.9
P1—C4—H4A109.6C23—C22—C21120.1 (3)
P1—C4—H4B109.6C23—C22—H22A119.9
N1—C4—P1110.08 (19)C18—C23—H23A119.8
N1—C4—H4A109.6C22—C23—C18120.5 (3)
N1—C4—H4B109.6C22—C23—H23A119.8
H4A—C4—H4B108.2C25—C24—C29119.3 (3)
C6—C5—P1120.5 (2)C25—C24—P2121.2 (2)
C6—C5—C10119.2 (3)C29—C24—P2119.1 (2)
C10—C5—P1120.3 (2)C24—C25—H25A119.9
C5—C6—H6A120.1C26—C25—C24120.2 (3)
C7—C6—C5119.7 (3)C26—C25—H25A119.9
C7—C6—H6A120.1C25—C26—C27120.5 (4)
C6—C7—H7A119.7C25—C26—H26A119.8
C8—C7—C6120.5 (3)C27—C26—H26A119.8
C8—C7—H7A119.7C26—C27—H27A120.0
C7—C8—C9120.4 (3)C28—C27—C26120.0 (3)
C7—C8—H8A119.8C28—C27—H27A120.0
C9—C8—H8A119.8C27—C28—C29120.4 (4)
C8—C9—C10120.5 (3)C27—C28—H28A119.8
C8—C9—H9A119.7C29—C28—H28A119.8
C10—C9—H9A119.7C24—C29—H29A120.2
C5—C10—H10A120.2C28—C29—C24119.7 (3)
C9—C10—C5119.7 (3)C28—C29—H29A120.2
D—H···AD—HH···AD···AD—H···A
C4—H4B···O5ii0.972.313.248 (3)163
Pd1—P12.2198 (7)
Pd1—P22.2087 (9)
Pd1—O32.144 (2)
Pd1—O62.1377 (17)
P2—Pd1—P192.34 (3)
O3—Pd1—P189.72 (5)
O3—Pd1—P2177.92 (5)
O3—Pd1—O691.77 (8)
O6—Pd1—P1173.04 (6)
O6—Pd1—P286.15 (6)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4B⋯O5i0.972.313.248 (3)163

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  New tetraphosphane ligands {(X2P)2NC6H4N(PX2)2} (X = Cl, F,OMe, OC6H4OMe-o): synthesis, derivatization, group 10 and 11 metal complexes and catalytic investigations. DFT calculations on intermolecular P...P interactions in halo-phosphines.

Authors:  Chelladurai Ganesamoorthy; Maravanji S Balakrishna; Joel T Mague; Heikki M Tuononen
Journal:  Inorg Chem       Date:  2008-07-08       Impact factor: 5.165

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  1 in total

1.  {4-[(Diphenyl-phosphino)methyl-amino]pyridinium-κP}bis-(nitrato-κO)silver(I).

Authors:  Jing Shang; Liu-Cheng Gui; Qing-Ling Ni; Min Zhong; Heng-Chi Lian
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-19
  1 in total

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