Literature DB >> 21583790

Aqua-(dicyanamido){μ-6,6'-dimeth-oxy-2,2'-[ethane-1,2-diylbis(nitrilo-methyl-idyne)]diphenolato}nickel(II)sodium.

Wei Wang, Yong-Miao Shen.   

Abstract

The mol-ecule of the title compound, [NaNi(C(18)H(18)N(2)O(4))(C(2)N(3))(H(2)O)], is approximately planar, with a maximum deviation from the mol-ecular plane of 0.770 (5) Å. The coordination environment of the Ni(2+) ion is distorted square-planar and it is N(2)O(2) coordinated by the 6,6'-dimeth-oxy-2,2'-[ethane-1,2-diylbis(nitrilo-methyl-idyne)]diphenolate Schiff base ligand. The Na(+) atom is chelated by the four O atoms of the Schiff base ligand, a water ligand and a dicyanamide anion. The structure displays inter-molecular O-H⋯N hydrogen bonding.

Entities:  

Year:  2009        PMID: 21583790      PMCID: PMC2977604          DOI: 10.1107/S160053680901438X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For chemical background, see: Ohba & Okawa (2000 ▶). For related structures, see: Correia et al. (2005 ▶); Costes et al.(2004 ▶).

Experimental

Crystal data

[NaNi(C18H18N2O4)(C2N3)(H2O)] M = 492.11 Monoclinic, a = 7.4654 (14) Å b = 22.745 (4) Å c = 13.177 (3) Å β = 101.282 (4)° V = 2194.2 (8) Å3 Z = 4 Mo Kα radiation μ = 0.95 mm−1 T = 293 K 0.14 × 0.13 × 0.11 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.879, T max = 0.903 10817 measured reflections 3864 independent reflections 2815 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.099 S = 1.02 3864 reflections 291 parameters 54 restraints H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.35 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680901438X/hg2500sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680901438X/hg2500Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[NaNi(C18H18N2O4)(C2N3)(H2O)]F(000) = 1016
Mr = 492.11Dx = 1.490 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3120 reflections
a = 7.4654 (14) Åθ = 2.5–24.6°
b = 22.745 (4) ŵ = 0.95 mm1
c = 13.177 (3) ÅT = 293 K
β = 101.282 (4)°Block, orange
V = 2194.2 (8) Å30.14 × 0.13 × 0.11 mm
Z = 4
Bruker SMART CCD area-detector diffractometer3864 independent reflections
Radiation source: fine-focus sealed tube2815 reflections with I > 2σ(I)
graphiteRint = 0.032
φ and ω scansθmax = 25.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −8→8
Tmin = 0.879, Tmax = 0.903k = −26→27
10817 measured reflectionsl = −15→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.099H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0455P)2 + 0.4335P] where P = (Fo2 + 2Fc2)/3
3864 reflections(Δ/σ)max = 0.001
291 parametersΔρmax = 0.33 e Å3
54 restraintsΔρmin = −0.35 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.24893 (5)0.506776 (16)0.06029 (3)0.04684 (15)
Na10.36614 (16)0.38280 (5)0.20328 (9)0.0527 (3)
O10.2723 (3)0.48215 (8)0.19509 (16)0.0545 (5)
O20.3315 (3)0.43203 (8)0.03988 (15)0.0497 (5)
O30.3154 (4)0.42650 (10)0.36882 (17)0.0732 (7)
O40.4284 (3)0.32315 (9)0.04958 (19)0.0655 (6)
O50.1624 (3)0.30933 (10)0.21624 (17)0.0731 (7)
H5A0.10050.30320.26010.088*
H5B0.13050.28710.16650.088*
N10.1665 (3)0.58076 (11)0.0844 (2)0.0584 (7)
N20.2232 (3)0.52892 (13)−0.0760 (2)0.0589 (7)
N30.9189 (4)0.28821 (17)0.3648 (3)0.0917 (9)
N41.0360 (5)0.26666 (15)0.5450 (3)0.0888 (10)
N50.6431 (5)0.34246 (17)0.2954 (3)0.0934 (9)
C10.3049 (4)0.43665 (18)−0.1445 (3)0.0652 (10)
C20.3415 (4)0.40716 (15)−0.0485 (2)0.0511 (8)
C30.3908 (4)0.34689 (15)−0.0474 (3)0.0601 (9)
C40.4007 (6)0.3183 (2)−0.1377 (4)0.0885 (13)
H40.43210.2787−0.13610.106*
C50.3642 (7)0.3480 (3)−0.2315 (4)0.1134 (17)
H50.37080.3281−0.29230.136*
C60.3189 (6)0.4060 (3)−0.2353 (3)0.0998 (15)
H60.29690.4256−0.29850.120*
C70.2509 (5)0.49684 (19)−0.1515 (3)0.0694 (11)
H70.23420.5144−0.21640.083*
C80.4977 (6)0.26446 (15)0.0610 (3)0.0903 (13)
H8A0.40440.23750.02920.135*
H8B0.53370.25530.13320.135*
H8C0.60140.26110.02830.135*
C90.1804 (5)0.57147 (14)0.2674 (3)0.0631 (9)
C100.2389 (4)0.51231 (13)0.2744 (3)0.0524 (8)
C110.2599 (5)0.48361 (15)0.3708 (3)0.0615 (9)
C120.2255 (6)0.5127 (2)0.4565 (3)0.0842 (12)
H120.23980.49330.51960.101*
C130.1694 (7)0.5711 (2)0.4492 (4)0.0982 (14)
H130.14690.59050.50760.118*
C140.1473 (6)0.59969 (18)0.3580 (4)0.0854 (12)
H140.10950.63870.35430.102*
C150.3392 (6)0.39343 (19)0.4619 (3)0.0919 (13)
H15A0.42530.41300.51470.138*
H15B0.38410.35500.45020.138*
H15C0.22410.39000.48360.138*
C170.1111 (6)0.61685 (18)−0.0096 (4)0.0889 (13)
H16A−0.02090.6203−0.02570.107*
H16B0.16190.65600.00280.107*
C180.1737 (7)0.59090 (18)−0.0957 (4)0.0952 (14)
H17A0.27910.6124−0.10860.114*
H17B0.07820.5938−0.15710.114*
C190.9741 (5)0.27798 (17)0.4624 (3)0.0681 (9)
C200.7695 (6)0.31745 (18)0.3323 (3)0.0762 (9)
C160.1480 (5)0.60153 (15)0.1717 (3)0.0691 (10)
H200.10910.64040.17240.083*
U11U22U33U12U13U23
Ni10.0435 (2)0.0440 (2)0.0519 (3)−0.00269 (17)0.00649 (17)0.00924 (18)
Na10.0576 (7)0.0475 (7)0.0521 (7)0.0048 (6)0.0090 (6)0.0046 (5)
O10.0737 (15)0.0407 (11)0.0502 (13)0.0055 (10)0.0146 (11)−0.0009 (10)
O20.0576 (13)0.0493 (12)0.0426 (12)0.0010 (10)0.0109 (10)0.0014 (9)
O30.115 (2)0.0601 (15)0.0482 (14)0.0084 (14)0.0235 (13)0.0051 (11)
O40.0800 (16)0.0474 (13)0.0746 (17)−0.0003 (11)0.0284 (13)−0.0082 (12)
O50.0885 (17)0.0713 (15)0.0650 (16)−0.0195 (13)0.0290 (13)−0.0105 (12)
N10.0475 (16)0.0432 (15)0.081 (2)−0.0028 (12)0.0046 (14)0.0120 (15)
N20.0461 (16)0.0653 (18)0.0625 (19)−0.0061 (13)0.0036 (14)0.0215 (15)
N30.0765 (19)0.131 (2)0.0687 (18)0.0310 (17)0.0164 (15)0.0124 (18)
N40.099 (2)0.085 (2)0.076 (2)0.0171 (19)0.0042 (18)0.0172 (18)
N50.0782 (19)0.125 (2)0.0725 (19)0.0268 (18)0.0037 (16)0.0108 (17)
C10.046 (2)0.100 (3)0.049 (2)−0.0013 (19)0.0089 (15)−0.001 (2)
C20.0405 (17)0.070 (2)0.0432 (19)−0.0088 (16)0.0099 (14)−0.0071 (16)
C30.056 (2)0.067 (2)0.060 (2)−0.0097 (17)0.0196 (17)−0.0206 (19)
C40.088 (3)0.097 (3)0.083 (3)−0.003 (2)0.023 (2)−0.034 (3)
C50.119 (4)0.159 (5)0.066 (3)0.015 (4)0.027 (3)−0.038 (3)
C60.097 (3)0.160 (5)0.044 (2)0.008 (3)0.018 (2)−0.009 (3)
C70.051 (2)0.108 (3)0.048 (2)−0.007 (2)0.0077 (16)0.021 (2)
C80.111 (3)0.045 (2)0.124 (4)0.000 (2)0.045 (3)−0.009 (2)
C90.057 (2)0.052 (2)0.079 (3)0.0015 (16)0.0093 (18)−0.0180 (19)
C100.0513 (19)0.0493 (18)0.057 (2)−0.0025 (15)0.0122 (15)−0.0081 (16)
C110.066 (2)0.065 (2)0.056 (2)−0.0009 (18)0.0165 (17)−0.0114 (18)
C120.097 (3)0.100 (3)0.057 (3)0.000 (3)0.019 (2)−0.018 (2)
C130.111 (4)0.099 (4)0.088 (4)0.006 (3)0.027 (3)−0.043 (3)
C140.083 (3)0.071 (3)0.102 (3)0.015 (2)0.016 (2)−0.033 (3)
C150.124 (4)0.096 (3)0.058 (2)0.001 (3)0.025 (2)0.022 (2)
C170.079 (3)0.075 (3)0.113 (4)0.017 (2)0.018 (3)0.047 (3)
C180.108 (3)0.080 (3)0.094 (3)0.005 (3)0.011 (3)0.041 (3)
C190.0625 (19)0.080 (2)0.0614 (18)0.0125 (16)0.0121 (16)0.0107 (18)
C200.068 (2)0.105 (2)0.0550 (18)0.0168 (19)0.0113 (16)0.0098 (18)
C160.061 (2)0.0391 (18)0.102 (3)0.0030 (16)0.004 (2)−0.006 (2)
Ni1—O11.838 (2)C3—C41.371 (5)
Ni1—N21.839 (3)C4—C51.387 (6)
Ni1—N11.840 (3)C4—H40.9300
Ni1—O21.8457 (19)C5—C61.361 (7)
Na1—O52.288 (2)C5—H50.9300
Na1—O12.362 (2)C6—H60.9300
Na1—N52.368 (4)C7—H70.9300
Na1—O22.395 (2)C8—H8A0.9600
Na1—O32.492 (3)C8—H8B0.9600
Na1—O42.555 (2)C8—H8C0.9600
O1—C101.314 (4)C9—C101.412 (4)
O2—C21.310 (3)C9—C161.413 (5)
O3—C111.365 (4)C9—C141.419 (5)
O3—C151.420 (4)C10—C111.410 (5)
O4—C31.365 (4)C11—C121.375 (5)
O4—C81.429 (4)C12—C131.389 (6)
O5—H5A0.8200C12—H120.9300
O5—H5B0.8246C13—C141.349 (6)
N1—C161.276 (4)C13—H130.9300
N1—C171.476 (4)C14—H140.9300
N2—C71.282 (4)C15—H15A0.9600
N2—C181.468 (5)C15—H15B0.9600
N3—C191.292 (5)C15—H15C0.9600
N3—C201.297 (5)C17—C181.436 (6)
N4—C191.127 (4)C17—H16A0.9700
N5—C201.127 (4)C17—H16B0.9700
C1—C61.405 (5)C18—H17A0.9700
C1—C21.411 (5)C18—H17B0.9700
C1—C71.425 (5)C16—H200.9300
C2—C31.419 (5)
O1—Ni1—N2178.09 (11)C6—C5—C4120.6 (4)
O1—Ni1—N194.79 (11)C6—C5—H5119.7
N2—Ni1—N186.76 (14)C4—C5—H5119.7
O1—Ni1—O283.62 (9)C5—C6—C1120.5 (4)
N2—Ni1—O294.82 (11)C5—C6—H6119.7
N1—Ni1—O2178.41 (11)C1—C6—H6119.7
O5—Na1—O1120.42 (9)N2—C7—C1125.7 (3)
O5—Na1—N5101.85 (12)N2—C7—H7117.1
O1—Na1—N5127.99 (12)C1—C7—H7117.1
O5—Na1—O2116.86 (9)O4—C8—H8A109.5
O1—Na1—O262.15 (7)O4—C8—H8B109.5
N5—Na1—O2124.88 (11)H8A—C8—H8B109.5
O5—Na1—O390.51 (9)O4—C8—H8C109.5
O1—Na1—O364.15 (8)H8A—C8—H8C109.5
N5—Na1—O388.43 (11)H8B—C8—H8C109.5
O2—Na1—O3126.30 (8)C10—C9—C16121.1 (3)
O5—Na1—O484.15 (8)C10—C9—C14118.6 (4)
O1—Na1—O4124.77 (9)C16—C9—C14120.2 (4)
N5—Na1—O485.68 (11)O1—C10—C11118.0 (3)
O2—Na1—O462.63 (7)O1—C10—C9123.4 (3)
O3—Na1—O4171.07 (9)C11—C10—C9118.6 (3)
C10—O1—Ni1127.8 (2)O3—C11—C12125.5 (4)
C10—O1—Na1124.3 (2)O3—C11—C10113.8 (3)
Ni1—O1—Na1107.87 (9)C12—C11—C10120.7 (4)
C2—O2—Ni1127.3 (2)C11—C12—C13120.4 (4)
C2—O2—Na1125.61 (19)C11—C12—H12119.8
Ni1—O2—Na1106.26 (9)C13—C12—H12119.8
C11—O3—C15118.3 (3)C14—C13—C12120.3 (4)
C11—O3—Na1119.68 (19)C14—C13—H13119.8
C15—O3—Na1122.0 (2)C12—C13—H13119.8
C3—O4—C8118.2 (3)C13—C14—C9121.3 (4)
C3—O4—Na1119.73 (19)C13—C14—H14119.3
C8—O4—Na1122.1 (2)C9—C14—H14119.3
Na1—O5—H5A130.6O3—C15—H15A109.5
Na1—O5—H5B118.8O3—C15—H15B109.5
H5A—O5—H5B110.0H15A—C15—H15B109.5
C16—N1—C17119.2 (3)O3—C15—H15C109.5
C16—N1—Ni1126.4 (2)H15A—C15—H15C109.5
C17—N1—Ni1114.3 (3)H15B—C15—H15C109.5
C7—N2—C18118.9 (3)C18—C17—N1110.7 (3)
C7—N2—Ni1126.8 (3)C18—C17—H16A109.5
C18—N2—Ni1114.2 (3)N1—C17—H16A109.5
C19—N3—C20120.5 (3)C18—C17—H16B109.5
C20—N5—Na1171.8 (4)N1—C17—H16B109.5
C6—C1—C2119.6 (4)H16A—C17—H16B108.1
C6—C1—C7119.2 (4)C17—C18—N2111.4 (3)
C2—C1—C7121.1 (3)C17—C18—H17A109.4
O2—C2—C1123.9 (3)N2—C18—H17A109.4
O2—C2—C3117.9 (3)C17—C18—H17B109.4
C1—C2—C3118.2 (3)N2—C18—H17B109.4
O4—C3—C4126.1 (4)H17A—C18—H17B108.0
O4—C3—C2113.4 (3)N4—C19—N3173.6 (4)
C4—C3—C2120.4 (4)N5—C20—N3173.8 (4)
C3—C4—C5120.5 (4)N1—C16—C9126.5 (3)
C3—C4—H4119.7N1—C16—H20116.7
C5—C4—H4119.7C9—C16—H20116.7
D—H···AD—HH···AD···AD—H···A
O5—H5A···N3i0.822.142.960 (4)175
O5—H5B···N4ii0.822.032.852 (4)177
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H5A⋯N3i0.822.142.960 (4)175
O5—H5B⋯N4ii0.822.032.852 (4)177

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, structure, and magnetic properties of heterometallic dicyanamide-bridged Cu-Na and Cu-Gd one-dimensional polymers.

Authors:  Jean-Pierre Costes; Ghenadie Novitchi; Sergiu Shova; Françoise Dahan; Bruno Donnadieu; Jean-Pierre Tuchagues
Journal:  Inorg Chem       Date:  2004-11-29       Impact factor: 5.165

  2 in total
  1 in total

1.  Crystal structure of {μ-6,6'-dimeth-oxy-2,2'-[ethane-1,2-diylbis(nitrilo-methanylyl-idene)]diphenolato}(meth-anol)(nitrato)nickel(II)sodium.

Authors:  Olesia V Moroz; Viktor A Trush; Tatiana Yu Sliva; Irina S Konovalova; Vladimir M Amirkhanov
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-10-08
  1 in total

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