Literature DB >> 21583770

[5-(4-Bromo-phenoxy-meth-yl)-1,3,4-thia-diazole-2-thiol-ato]triphenyl-tin(IV).

Zhi-Feng Wang, Gui-Long Zhao, Lai-Jin Tian.   

Abstract

In title compound, [Sn(C(6)H(5))(3)(C(9)H(6)BrN(2)OS(2))], the Sn atom is five-coordinated and the 1,3,4-thia-diazole-2-thiol ligand acts as an S,N-bidentate chelating ligand. The five-coordinate Sn(IV) atom forms four primary bonds, three to the phenyl groups and one to the S atom. Thus, the title complex has a distorted cis-trigonal bipyramidal geometry with the S atom and two C atoms occupying the equatorial plane, whereas the N atom and another C atom are in axial positions. In addition, there is a weak intramolecular SnN interaction. The crystal structure involves weak intra-molecular C-H⋯N and inter-molecular C-H⋯Br hydrogen bonding.

Entities:  

Year:  2009        PMID: 21583770      PMCID: PMC2977584          DOI: 10.1107/S1600536809012793

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of 1,3,4-thia­diazole compounds, see: Oruc et al. (2004); Sawhney & Sharma (1993); Srivastava & Pandey (1993). For the biological activity of organotin(IV) compounds, see: Jimenez-Perez et al. (2000). For related crystal structures, see: Ma et al. (2006); Ng et al. (1990); Rodarte de Moura et al. (1999).

Experimental

Crystal data

[Sn(C6H5)3(C9H6BrN2OS2)] M = 652.18 Monoclinic, a = 15.524 (3) Å b = 9.766 (2) Å c = 18.019 (4) Å β = 107.10 (3)° V = 2611.2 (9) Å3 Z = 4 Mo Kα radiation μ = 2.69 mm−1 T = 293 K 0.22 × 0.20 × 0.16 mm

Data collection

Rigaku Saturn CCD area-detector diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) T min = 0.589, T max = 0.673 17098 measured reflections 4610 independent reflections 3736 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.077 S = 1.04 4610 reflections 308 parameters H-atom parameters constrained Δρmax = 0.54 e Å−3 Δρmin = −0.38 e Å−3 Data collection: CrystalClear (Rigaku, 2005); cell refinement: CrystalClear (Rigaku, 2005); data reduction: CrystalClear (Rigaku, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809012793/hg2497sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809012793/hg2497Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Sn(C6H5)3(C9H6BrN2OS2)]F(000) = 1288
Mr = 652.18Dx = 1.659 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 6604 reflections
a = 15.524 (3) Åθ = 2.5–27.1°
b = 9.766 (2) ŵ = 2.69 mm1
c = 18.019 (4) ÅT = 293 K
β = 107.10 (3)°Platelet, colorless
V = 2611.2 (9) Å30.22 × 0.20 × 0.16 mm
Z = 4
Rigaku Saturn CCD area-detector diffractometer4610 independent reflections
Radiation source: rotating anode3736 reflections with I > 2σ(I)
confocalRint = 0.034
Detector resolution: 7.31 pixels mm-1θmax = 25.0°, θmin = 2.5°
ω and φ scansh = −18→18
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −11→11
Tmin = 0.589, Tmax = 0.673l = −21→20
17098 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.034H-atom parameters constrained
wR(F2) = 0.077w = 1/[σ2(Fo2) + (0.0416P)2] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.003
4610 reflectionsΔρmax = 0.54 e Å3
308 parametersΔρmin = −0.38 e Å3
0 restraintsExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0068 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Sn10.812768 (15)0.08685 (2)1.009453 (13)0.04854 (12)
Br1−0.04987 (3)0.06136 (5)0.59342 (3)0.08367 (17)
S10.68434 (6)0.19432 (11)1.04208 (6)0.0688 (3)
S20.49137 (6)0.15741 (10)0.93629 (6)0.0633 (3)
O10.32794 (15)0.1042 (2)0.80766 (14)0.0618 (6)
N10.62663 (18)0.0247 (3)0.92206 (17)0.0562 (7)
N20.55438 (19)−0.0210 (3)0.86289 (18)0.0596 (8)
C10.9210 (2)0.1827 (3)1.09675 (19)0.0473 (8)
C20.9848 (2)0.2580 (3)1.0757 (2)0.0584 (9)
H20.97860.27131.02320.070*
C31.0581 (2)0.3144 (4)1.1306 (2)0.0705 (11)
H31.10030.36561.11500.085*
C41.0682 (3)0.2949 (4)1.2074 (2)0.0729 (11)
H41.11770.33201.24440.088*
C51.0055 (3)0.2207 (4)1.2304 (2)0.0775 (12)
H51.01240.20721.28290.093*
C60.9316 (3)0.1658 (4)1.1749 (2)0.0674 (10)
H60.88870.11701.19060.081*
C70.8293 (2)−0.1298 (3)1.02802 (18)0.0469 (8)
C80.7640 (3)−0.2272 (3)0.9964 (2)0.0621 (9)
H80.7080−0.20050.96420.075*
C90.7824 (3)−0.3646 (4)1.0128 (2)0.0737 (11)
H90.7381−0.42930.99140.088*
C100.8638 (3)−0.4068 (4)1.0595 (2)0.0667 (10)
H100.8746−0.49931.07050.080*
C110.9300 (2)−0.3114 (4)1.0904 (2)0.0592 (9)
H110.9863−0.33941.12140.071*
C120.9121 (2)−0.1734 (4)1.0750 (2)0.0548 (9)
H120.9565−0.10911.09680.066*
C130.8166 (2)0.1580 (3)0.89873 (19)0.0475 (8)
C140.7985 (3)0.2930 (4)0.8760 (2)0.0686 (10)
H140.78000.35370.90800.082*
C150.8078 (3)0.3388 (4)0.8055 (3)0.0816 (13)
H150.79540.42960.79080.098*
C160.8350 (3)0.2514 (5)0.7582 (2)0.0813 (13)
H160.84180.28240.71140.098*
C170.8521 (3)0.1185 (5)0.7795 (2)0.0761 (11)
H170.87010.05840.74690.091*
C180.8431 (2)0.0720 (3)0.8490 (2)0.0590 (9)
H180.8551−0.01940.86250.071*
C190.6045 (2)0.1174 (3)0.9649 (2)0.0571 (9)
C200.4795 (2)0.0390 (3)0.8630 (2)0.0541 (9)
C210.3936 (2)0.0089 (4)0.8024 (2)0.0681 (11)
H21A0.40250.01400.75140.082*
H21B0.3736−0.08300.80950.082*
C220.2436 (2)0.0887 (3)0.7565 (2)0.0503 (8)
C230.1754 (2)0.1615 (3)0.7739 (2)0.0541 (9)
H230.18820.21550.81830.065*
C240.0885 (2)0.1538 (3)0.7253 (2)0.0561 (9)
H240.04280.20340.73660.067*
C250.0695 (2)0.0727 (3)0.6602 (2)0.0526 (9)
C260.1366 (2)−0.0011 (4)0.6430 (2)0.0639 (10)
H260.1232−0.05600.59890.077*
C270.2241 (2)0.0064 (4)0.6917 (2)0.0615 (10)
H270.2696−0.04400.68050.074*
U11U22U33U12U13U23
Sn10.04381 (17)0.04862 (16)0.04831 (17)−0.00257 (11)0.00596 (11)−0.00390 (10)
Br10.0507 (3)0.1201 (4)0.0662 (3)0.0068 (2)−0.0046 (2)0.0018 (2)
S10.0507 (6)0.0825 (6)0.0681 (6)0.0058 (5)0.0096 (5)−0.0185 (5)
S20.0428 (5)0.0659 (6)0.0766 (7)0.0112 (5)0.0106 (5)−0.0134 (5)
O10.0415 (14)0.0626 (14)0.0735 (17)0.0067 (12)0.0047 (12)−0.0141 (13)
N10.0398 (16)0.0599 (17)0.0642 (19)0.0036 (15)0.0082 (15)−0.0037 (15)
N20.0459 (18)0.0541 (17)0.075 (2)0.0067 (15)0.0116 (16)−0.0043 (16)
C10.0456 (19)0.0422 (17)0.051 (2)−0.0010 (16)0.0094 (16)−0.0037 (15)
C20.054 (2)0.067 (2)0.052 (2)−0.0032 (19)0.0142 (18)−0.0060 (18)
C30.052 (2)0.075 (3)0.083 (3)−0.016 (2)0.018 (2)−0.016 (2)
C40.064 (3)0.069 (2)0.073 (3)−0.013 (2)−0.001 (2)−0.018 (2)
C50.104 (3)0.072 (3)0.044 (2)−0.014 (3)0.002 (2)−0.006 (2)
C60.080 (3)0.070 (2)0.051 (2)−0.024 (2)0.016 (2)−0.0039 (19)
C70.044 (2)0.0523 (18)0.0446 (19)0.0023 (16)0.0125 (16)−0.0013 (15)
C80.049 (2)0.052 (2)0.073 (2)−0.0048 (19)−0.0012 (18)−0.0059 (19)
C90.055 (2)0.050 (2)0.101 (3)−0.002 (2)−0.001 (2)−0.005 (2)
C100.068 (3)0.050 (2)0.079 (3)0.008 (2)0.016 (2)0.004 (2)
C110.043 (2)0.069 (2)0.063 (2)0.017 (2)0.0123 (18)0.0032 (19)
C120.0399 (19)0.061 (2)0.060 (2)0.0001 (18)0.0101 (17)−0.0073 (18)
C130.0360 (18)0.0492 (18)0.051 (2)−0.0021 (15)0.0031 (15)−0.0020 (16)
C140.070 (3)0.055 (2)0.070 (3)0.005 (2)0.004 (2)−0.001 (2)
C150.077 (3)0.068 (3)0.081 (3)−0.011 (2)−0.007 (2)0.024 (2)
C160.069 (3)0.112 (4)0.055 (2)−0.024 (3)0.007 (2)0.012 (3)
C170.071 (3)0.098 (3)0.063 (3)−0.010 (3)0.025 (2)−0.009 (2)
C180.058 (2)0.057 (2)0.060 (2)−0.0044 (18)0.0140 (19)0.0003 (18)
C190.048 (2)0.058 (2)0.060 (2)0.0054 (18)0.0094 (18)−0.0035 (18)
C200.044 (2)0.0504 (18)0.064 (2)0.0034 (17)0.0102 (18)−0.0033 (17)
C210.050 (2)0.063 (2)0.085 (3)0.0012 (19)0.011 (2)−0.017 (2)
C220.0373 (18)0.0498 (19)0.059 (2)−0.0015 (16)0.0064 (16)−0.0007 (17)
C230.048 (2)0.0521 (19)0.061 (2)−0.0003 (17)0.0152 (18)−0.0091 (17)
C240.046 (2)0.059 (2)0.062 (2)0.0056 (18)0.0134 (18)0.0024 (18)
C250.043 (2)0.057 (2)0.053 (2)0.0025 (17)0.0071 (17)0.0107 (17)
C260.059 (2)0.069 (2)0.055 (2)−0.002 (2)0.0044 (19)−0.0086 (19)
C270.046 (2)0.069 (2)0.065 (2)0.0097 (19)0.0092 (19)−0.014 (2)
Sn1—C132.130 (3)C9—H90.9300
Sn1—C72.146 (3)C10—C111.377 (5)
Sn1—C12.149 (3)C10—H100.9300
Sn1—S12.4721 (10)C11—C121.388 (5)
Sn1—N12.919 (3)C11—H110.9300
Br1—C251.892 (4)C12—H120.9300
S1—C191.738 (4)C13—C181.376 (4)
S2—C191.724 (4)C13—C141.384 (4)
S2—C201.725 (4)C14—C151.393 (5)
O1—C221.370 (4)C14—H140.9300
O1—C211.404 (4)C15—C161.358 (6)
N1—C191.299 (4)C15—H150.9300
N1—N21.375 (4)C16—C171.357 (6)
N2—C201.301 (4)C16—H160.9300
C1—C21.375 (4)C17—C181.376 (5)
C1—C61.378 (4)C17—H170.9300
C2—C31.384 (5)C18—H180.9300
C2—H20.9300C20—C211.485 (5)
C3—C41.360 (5)C21—H21A0.9700
C3—H30.9300C21—H21B0.9700
C4—C51.373 (5)C22—C271.376 (5)
C4—H40.9300C22—C231.386 (4)
C5—C61.389 (5)C23—C241.376 (4)
C5—H50.9300C23—H230.9300
C6—H60.9300C24—C251.375 (5)
C7—C121.382 (4)C24—H240.9300
C7—C81.385 (5)C25—C261.374 (5)
C8—C91.385 (5)C26—C271.386 (5)
C8—H80.9300C26—H260.9300
C9—C101.360 (5)C27—H270.9300
C13—Sn1—C7115.65 (11)C18—C13—Sn1120.5 (2)
C13—Sn1—C1108.20 (12)C14—C13—Sn1121.9 (3)
C7—Sn1—C1106.47 (12)C13—C14—C15120.6 (4)
C13—Sn1—S1109.32 (9)C13—C14—H14119.7
C7—Sn1—S1116.71 (8)C15—C14—H14119.7
C1—Sn1—S198.76 (9)C16—C15—C14120.3 (4)
C19—S1—Sn193.52 (12)C16—C15—H15119.8
C19—S2—C2086.94 (17)C14—C15—H15119.8
C22—O1—C21116.7 (3)C17—C16—C15119.6 (4)
C19—N1—N2112.9 (3)C17—C16—H16120.2
C20—N2—N1112.2 (3)C15—C16—H16120.2
C2—C1—C6117.8 (3)C16—C17—C18120.7 (4)
C2—C1—Sn1120.2 (2)C16—C17—H17119.7
C6—C1—Sn1121.9 (2)C18—C17—H17119.7
C1—C2—C3121.6 (3)C17—C18—C13121.3 (4)
C1—C2—H2119.2C17—C18—H18119.3
C3—C2—H2119.2C13—C18—H18119.3
C4—C3—C2119.8 (4)N1—C19—S2113.8 (3)
C4—C3—H3120.1N1—C19—S1121.7 (3)
C2—C3—H3120.1S2—C19—S1124.4 (2)
C3—C4—C5120.1 (4)N2—C20—C21121.3 (3)
C3—C4—H4120.0N2—C20—S2114.1 (3)
C5—C4—H4120.0C21—C20—S2124.5 (3)
C4—C5—C6119.7 (3)O1—C21—C20109.4 (3)
C4—C5—H5120.2O1—C21—H21A109.8
C6—C5—H5120.2C20—C21—H21A109.8
C1—C6—C5121.1 (3)O1—C21—H21B109.8
C1—C6—H6119.5C20—C21—H21B109.8
C5—C6—H6119.5H21A—C21—H21B108.2
C12—C7—C8118.4 (3)O1—C22—C27124.3 (3)
C12—C7—Sn1116.5 (2)O1—C22—C23115.7 (3)
C8—C7—Sn1125.0 (3)C27—C22—C23120.0 (3)
C7—C8—C9119.9 (4)C24—C23—C22120.0 (3)
C7—C8—H8120.1C24—C23—H23120.0
C9—C8—H8120.1C22—C23—H23120.0
C10—C9—C8121.4 (4)C25—C24—C23119.9 (3)
C10—C9—H9119.3C25—C24—H24120.0
C8—C9—H9119.3C23—C24—H24120.0
C9—C10—C11119.5 (3)C26—C25—C24120.5 (3)
C9—C10—H10120.3C26—C25—Br1119.4 (3)
C11—C10—H10120.3C24—C25—Br1120.1 (3)
C10—C11—C12119.6 (3)C25—C26—C27119.8 (3)
C10—C11—H11120.2C25—C26—H26120.1
C12—C11—H11120.2C27—C26—H26120.1
C7—C12—C11121.2 (3)C22—C27—C26119.8 (3)
C7—C12—H12119.4C22—C27—H27120.1
C11—C12—H12119.4C26—C27—H27120.1
C18—C13—C14117.5 (3)
C13—Sn1—S1—C1963.59 (15)C1—Sn1—C13—C14−66.9 (3)
C7—Sn1—S1—C19−70.03 (16)S1—Sn1—C13—C1439.7 (3)
C1—Sn1—S1—C19176.47 (15)C18—C13—C14—C15−0.6 (5)
C19—N1—N2—C200.0 (4)Sn1—C13—C14—C15175.4 (3)
C13—Sn1—C1—C2−8.8 (3)C13—C14—C15—C16−0.1 (6)
C7—Sn1—C1—C2116.1 (3)C14—C15—C16—C170.7 (7)
S1—Sn1—C1—C2−122.5 (3)C15—C16—C17—C18−0.7 (7)
C13—Sn1—C1—C6174.5 (3)C16—C17—C18—C130.0 (6)
C7—Sn1—C1—C6−60.6 (3)C14—C13—C18—C170.6 (5)
S1—Sn1—C1—C660.8 (3)Sn1—C13—C18—C17−175.4 (3)
C6—C1—C2—C30.6 (5)N2—N1—C19—S20.1 (4)
Sn1—C1—C2—C3−176.3 (3)N2—N1—C19—S1−178.5 (2)
C1—C2—C3—C40.4 (6)C20—S2—C19—N1−0.1 (3)
C2—C3—C4—C5−0.7 (6)C20—S2—C19—S1178.4 (3)
C3—C4—C5—C6−0.1 (6)Sn1—S1—C19—N17.6 (3)
C2—C1—C6—C5−1.3 (6)Sn1—S1—C19—S2−170.8 (2)
Sn1—C1—C6—C5175.4 (3)N1—N2—C20—C21177.7 (3)
C4—C5—C6—C11.1 (6)N1—N2—C20—S2−0.1 (4)
C13—Sn1—C7—C12104.7 (2)C19—S2—C20—N20.1 (3)
C1—Sn1—C7—C12−15.5 (3)C19—S2—C20—C21−177.6 (3)
S1—Sn1—C7—C12−124.6 (2)C22—O1—C21—C20−178.6 (3)
C13—Sn1—C7—C8−75.0 (3)N2—C20—C21—O1−169.3 (3)
C1—Sn1—C7—C8164.8 (3)S2—C20—C21—O18.3 (5)
S1—Sn1—C7—C855.7 (3)C21—O1—C22—C27−14.0 (5)
C12—C7—C8—C90.6 (5)C21—O1—C22—C23165.3 (3)
Sn1—C7—C8—C9−179.7 (3)O1—C22—C23—C24179.2 (3)
C7—C8—C9—C10−0.2 (6)C27—C22—C23—C24−1.5 (5)
C8—C9—C10—C11−0.9 (6)C22—C23—C24—C250.8 (5)
C9—C10—C11—C121.6 (6)C23—C24—C25—C260.1 (5)
C8—C7—C12—C110.1 (5)C23—C24—C25—Br1179.8 (2)
Sn1—C7—C12—C11−179.6 (2)C24—C25—C26—C27−0.1 (5)
C10—C11—C12—C7−1.2 (5)Br1—C25—C26—C27−179.9 (3)
C7—Sn1—C13—C18−10.3 (3)O1—C22—C27—C26−179.3 (3)
C1—Sn1—C13—C18109.0 (3)C23—C22—C27—C261.4 (5)
S1—Sn1—C13—C18−144.5 (3)C25—C26—C27—C22−0.6 (6)
C7—Sn1—C13—C14173.8 (3)
D—H···AD—HH···AD···AD—H···A
C9—H9···Br1i0.932.873.627 (4)139
C8—H8···N10.932.543.274 (5)136
Table 1

Selected bond lengths (Å)

Sn1—C132.130 (3)
Sn1—C72.146 (3)
Sn1—C12.149 (3)
Sn1—S12.4721 (10)
Sn1⋯N12.919 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C9—H9⋯Br1i0.932.873.627 (4)139
C8—H8⋯N10.932.543.274 (5)136

Symmetry code: (i) .

  2 in total

1.  1,3,4-thiadiazole derivatives. Synthesis, structure elucidation, and structure-antituberculosis activity relationship investigation.

Authors:  Elçin E Oruç; Sevim Rollas; Fatma Kandemirli; Nathaly Shvets; Anatholy S Dimoglo
Journal:  J Med Chem       Date:  2004-12-30       Impact factor: 7.446

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total
  1 in total

1.  Bis(dicyclo-hexyl-ammonium) μ-oxalato-κO,O:O,O-bis-[aqua-(oxalato-κO,O)diphenyl-stannate(IV)].

Authors:  Ndongo Gueye; Libasse Diop; K C Kieran Molloy; Gabrielle Kociok-Köhn
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-24
  1 in total

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