Literature DB >> 21583757

Poly[di-μ(2)-acetato-diaquabis(2,2'-bi-pyridine)bis(μ(3)-5-nitroisophthalato)tricobalt(II)].

Hai-Dong Wang1, Min-Min Li, Hong-Yin He.   

Abstract

The title complex, [Co(3)(C(8)H(3)NO(6))(2)(C(2)H(3)O(2))(2)(C(10)H(8)N(2))(2)(H(2)O)(2)], was synthesized under hydro-thermal conditions. The structure features a centrosymmetric complex with three Co(II) centres, one of which is located on a centre of inversion. The Co centres are coordinated in a distorted octa-hedral geometry. The bipyridine ligands are bonded to just one Co centre in a chelating mode, whereas the 5-nitro-isophthalate and acetate ions are bonded to two different Co atoms. The crystal structure is stabilized by O-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21583757      PMCID: PMC2977571          DOI: 10.1107/S1600536809012562

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: He et al. (2004 ▶, 2005 ▶); Zhang et al. (2006 ▶).

Experimental

Crystal data

[Co3(C8H3NO6)2(C2H3O2)2(C10H8N2)2(H2O)2] M = 1061.51 Triclinic, a = 10.0084 (1) Å b = 10.0781 (1) Å c = 11.3941 (1) Å α = 81.196 (1)° β = 67.685 (1)° γ = 69.472 (1)° V = 995.43 (2) Å3 Z = 1 Mo Kα radiation μ = 1.33 mm−1 T = 296 K 0.26 × 0.13 × 0.10 mm

Data collection

Bruker SMART 1K CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.724, T max = 0.883 10424 measured reflections 3679 independent reflections 3296 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.077 S = 1.03 3679 reflections 310 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.53 e Å−3 Δρmin = −0.45 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, added_by_encifer. DOI: 10.1107/S1600536809012562/bt2923sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809012562/bt2923Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co3(C8H3NO6)2(C2H3O2)2(C10H8N2)2(H2O)2]Z = 1
Mr = 1061.51F(000) = 539
Triclinic, P1Dx = 1.771 Mg m3
a = 10.0084 (1) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.0781 (1) ÅCell parameters from 10424 reflections
c = 11.3941 (1) Åθ = 1.9–25.5°
α = 81.196 (1)°µ = 1.33 mm1
β = 67.685 (1)°T = 296 K
γ = 69.472 (1)°Plate, red
V = 995.43 (2) Å30.26 × 0.13 × 0.10 mm
Bruker SMART 1K CCD diffractometer3679 independent reflections
Radiation source: fine-focus sealed tube3296 reflections with I > 2σ(I)
graphiteRint = 0.020
phi/ω scansθmax = 25.5°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2002)h = −12→12
Tmin = 0.724, Tmax = 0.883k = −12→12
10424 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.077H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0358P)2 + 1.058P] where P = (Fo2 + 2Fc2)/3
3679 reflections(Δ/σ)max < 0.001
310 parametersΔρmax = 0.53 e Å3
3 restraintsΔρmin = −0.45 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.00001.00000.50000.02056 (11)
Co20.29863 (3)0.66172 (3)0.34001 (3)0.02348 (10)
N10.5014 (2)0.4947 (2)0.26205 (19)0.0264 (4)
N20.2395 (2)0.5533 (2)0.23098 (19)0.0271 (4)
C60.3533 (3)0.4463 (2)0.1610 (2)0.0259 (5)
O10.38924 (18)0.74188 (17)0.43457 (16)0.0283 (4)
O90.10814 (18)0.86327 (17)0.34394 (15)0.0263 (4)
C110.5544 (3)0.8074 (2)0.5603 (2)0.0218 (5)
H11A0.60880.73530.50170.026*
C170.3124 (3)0.8272 (2)0.5243 (2)0.0233 (5)
C160.3980 (3)0.8686 (2)0.5891 (2)0.0219 (5)
C190.8024 (3)0.7950 (3)0.5801 (2)0.0269 (5)
C120.6310 (3)0.8526 (2)0.6180 (2)0.0233 (5)
O30.8695 (2)0.67757 (19)0.5289 (2)0.0414 (5)
C50.5033 (3)0.4180 (2)0.1738 (2)0.0256 (5)
C40.6363 (3)0.3199 (3)0.1018 (2)0.0337 (6)
H4A0.63610.27030.03950.040*
C140.3935 (3)1.0141 (2)0.7364 (2)0.0273 (5)
C130.5491 (3)0.9578 (3)0.7079 (2)0.0272 (5)
H13A0.59770.98940.74780.033*
C150.3160 (3)0.9740 (2)0.6786 (2)0.0262 (5)
H15A0.21141.01630.69890.031*
C90.0689 (3)0.5133 (3)0.1519 (3)0.0382 (6)
H9A−0.02880.53890.14950.046*
C70.3293 (3)0.3687 (3)0.0849 (3)0.0352 (6)
H7A0.40920.29510.03690.042*
C100.1008 (3)0.5858 (3)0.2260 (3)0.0328 (6)
H10A0.02250.66010.27420.039*
C10.6309 (3)0.4698 (3)0.2832 (3)0.0327 (6)
H1A0.62950.52170.34470.039*
C80.1844 (3)0.4028 (3)0.0818 (3)0.0406 (7)
H8A0.16520.35120.03240.049*
C20.7661 (3)0.3707 (3)0.2180 (3)0.0379 (6)
H2A0.85330.35390.23690.046*
N30.3069 (3)1.1250 (3)0.8321 (2)0.0462 (6)
C30.7690 (3)0.2970 (3)0.1241 (3)0.0392 (6)
H3A0.85980.23230.07610.047*
O60.1710 (3)1.1769 (3)0.8577 (3)0.0776 (9)
O20.17072 (18)0.88101 (19)0.56665 (16)0.0318 (4)
O40.8652 (2)0.8704 (2)0.60355 (17)0.0369 (4)
O50.3732 (3)1.1514 (4)0.8890 (3)0.1161 (15)
O1W0.17349 (19)0.56964 (19)0.50084 (18)0.0318 (4)
H1WA0.0831 (15)0.620 (2)0.523 (3)0.048*
H1WB0.180 (3)0.4895 (15)0.486 (3)0.048*
O80.31763 (19)0.80788 (18)0.17845 (16)0.0334 (4)
C320.1871 (3)0.8911 (2)0.2305 (2)0.0263 (5)
C330.1213 (4)1.0190 (3)0.1602 (3)0.0468 (7)
H33A0.19491.02390.07720.070*
H33B0.09521.10250.20560.070*
H33C0.03141.01290.15240.070*
U11U22U33U12U13U23
Co10.0155 (2)0.0220 (2)0.0263 (2)−0.00532 (16)−0.00810 (17)−0.00619 (17)
Co20.02330 (17)0.02240 (17)0.02775 (18)−0.00702 (13)−0.01024 (13)−0.00655 (13)
N10.0258 (10)0.0226 (10)0.0315 (11)−0.0068 (8)−0.0108 (8)−0.0030 (8)
N20.0270 (10)0.0274 (10)0.0295 (11)−0.0090 (8)−0.0106 (9)−0.0057 (8)
C60.0327 (13)0.0215 (11)0.0249 (12)−0.0087 (10)−0.0114 (10)−0.0010 (9)
O10.0230 (8)0.0311 (9)0.0350 (9)−0.0075 (7)−0.0115 (7)−0.0123 (7)
O90.0279 (9)0.0240 (8)0.0270 (9)−0.0078 (7)−0.0085 (7)−0.0052 (7)
C110.0251 (11)0.0195 (11)0.0236 (11)−0.0089 (9)−0.0092 (9)−0.0022 (9)
C170.0251 (12)0.0214 (11)0.0255 (12)−0.0074 (9)−0.0121 (9)0.0016 (9)
C160.0243 (11)0.0212 (11)0.0221 (11)−0.0085 (9)−0.0093 (9)−0.0001 (9)
C190.0258 (12)0.0310 (13)0.0279 (12)−0.0145 (10)−0.0099 (10)0.0027 (10)
C120.0256 (12)0.0219 (11)0.0256 (11)−0.0115 (9)−0.0099 (9)0.0020 (9)
O30.0261 (9)0.0334 (10)0.0636 (13)−0.0083 (8)−0.0114 (9)−0.0124 (9)
C50.0301 (12)0.0213 (11)0.0248 (12)−0.0083 (10)−0.0093 (10)0.0005 (9)
C40.0369 (14)0.0273 (13)0.0303 (13)−0.0046 (11)−0.0087 (11)−0.0040 (10)
C140.0327 (13)0.0255 (12)0.0241 (12)−0.0113 (10)−0.0063 (10)−0.0070 (10)
C130.0337 (13)0.0317 (13)0.0246 (12)−0.0182 (11)−0.0113 (10)−0.0029 (10)
C150.0239 (12)0.0250 (12)0.0274 (12)−0.0058 (9)−0.0073 (9)−0.0040 (10)
C90.0380 (15)0.0400 (15)0.0478 (16)−0.0155 (12)−0.0235 (13)−0.0031 (13)
C70.0434 (15)0.0287 (13)0.0365 (14)−0.0074 (11)−0.0180 (12)−0.0090 (11)
C100.0288 (13)0.0325 (13)0.0387 (14)−0.0082 (11)−0.0117 (11)−0.0098 (11)
C10.0318 (13)0.0284 (13)0.0433 (15)−0.0104 (11)−0.0180 (11)−0.0015 (11)
C80.0552 (18)0.0359 (15)0.0451 (16)−0.0165 (13)−0.0280 (14)−0.0090 (12)
C20.0274 (13)0.0329 (14)0.0530 (17)−0.0102 (11)−0.0160 (12)0.0063 (13)
N30.0444 (15)0.0481 (14)0.0441 (14)−0.0132 (12)−0.0057 (11)−0.0256 (12)
C30.0300 (14)0.0309 (14)0.0419 (15)−0.0007 (11)−0.0053 (12)−0.0006 (12)
O60.0595 (16)0.0778 (18)0.0809 (18)0.0265 (13)−0.0342 (14)−0.0527 (15)
O20.0200 (8)0.0421 (10)0.0341 (9)−0.0035 (7)−0.0137 (7)−0.0073 (8)
O40.0339 (10)0.0497 (11)0.0392 (10)−0.0286 (9)−0.0109 (8)−0.0037 (9)
O50.0539 (16)0.176 (3)0.130 (3)−0.0378 (19)0.0024 (16)−0.128 (3)
O1W0.0276 (9)0.0288 (9)0.0382 (10)−0.0091 (7)−0.0093 (8)−0.0044 (8)
O80.0297 (9)0.0333 (9)0.0322 (9)−0.0078 (8)−0.0055 (8)−0.0059 (8)
C320.0309 (13)0.0255 (12)0.0277 (12)−0.0107 (10)−0.0125 (10)−0.0058 (10)
C330.0542 (18)0.0416 (16)0.0379 (16)−0.0079 (14)−0.0182 (14)0.0054 (13)
Co1—O22.0503 (16)C5—C41.384 (3)
Co1—O2i2.0503 (16)C4—C31.381 (4)
Co1—O9i2.1153 (15)C4—H4A0.9300
Co1—O92.1153 (15)C14—C151.375 (3)
Co1—O4ii2.1154 (17)C14—C131.380 (4)
Co1—O4iii2.1154 (17)C14—N31.471 (3)
Co2—O12.0392 (15)C13—H13A0.9300
Co2—O1W2.0831 (18)C15—H15A0.9300
Co2—N12.1053 (19)C9—C81.372 (4)
Co2—N22.1249 (19)C9—C101.380 (4)
Co2—O82.1668 (18)C9—H9A0.9300
Co2—O92.2382 (16)C7—C81.382 (4)
N1—C11.338 (3)C7—H7A0.9300
N1—C51.350 (3)C10—H10A0.9300
N2—C101.331 (3)C1—C21.377 (4)
N2—C61.345 (3)C1—H1A0.9300
C6—C71.385 (3)C8—H8A0.9300
C6—C51.487 (3)C2—C31.380 (4)
O1—C171.259 (3)C2—H2A0.9300
O9—C321.281 (3)N3—O51.199 (3)
C11—C161.391 (3)N3—O61.206 (3)
C11—C121.395 (3)C3—H3A0.9300
C11—H11A0.9300O4—Co1iv2.1154 (17)
C17—O21.248 (3)O1W—H1WA0.826 (10)
C17—C161.508 (3)O1W—H1WB0.824 (10)
C16—C151.388 (3)O8—C321.248 (3)
C19—O31.244 (3)C32—C331.493 (4)
C19—O41.252 (3)C33—H33A0.9600
C19—C121.510 (3)C33—H33B0.9600
C12—C131.390 (3)C33—H33C0.9600
O2—Co1—O2i180.0C13—C12—C19119.0 (2)
O2—Co1—O9i92.58 (6)C11—C12—C19121.4 (2)
O2i—Co1—O9i87.42 (6)N1—C5—C4121.7 (2)
O2—Co1—O987.42 (6)N1—C5—C6115.1 (2)
O2i—Co1—O992.58 (6)C4—C5—C6123.2 (2)
O9i—Co1—O9180.000 (1)C3—C4—C5119.0 (2)
O2—Co1—O4ii90.67 (7)C3—C4—H4A120.5
O2i—Co1—O4ii89.33 (7)C5—C4—H4A120.5
O9i—Co1—O4ii88.72 (7)C15—C14—C13123.5 (2)
O9—Co1—O4ii91.28 (7)C15—C14—N3118.4 (2)
O2—Co1—O4iii89.33 (7)C13—C14—N3118.1 (2)
O2i—Co1—O4iii90.67 (7)C14—C13—C12118.1 (2)
O9i—Co1—O4iii91.28 (7)C14—C13—H13A120.9
O9—Co1—O4iii88.72 (7)C12—C13—H13A120.9
O4ii—Co1—O4iii180.0C14—C15—C16118.3 (2)
O1—Co2—O1W94.98 (7)C14—C15—H15A120.9
O1—Co2—N194.01 (7)C16—C15—H15A120.9
O1W—Co2—N1103.72 (7)C8—C9—C10118.6 (2)
O1—Co2—N2170.78 (7)C8—C9—H9A120.7
O1W—Co2—N287.41 (7)C10—C9—H9A120.7
N1—Co2—N276.77 (7)C8—C7—C6118.7 (2)
O1—Co2—O898.32 (7)C8—C7—H7A120.7
O1W—Co2—O8152.53 (7)C6—C7—H7A120.7
N1—Co2—O899.22 (7)N2—C10—C9122.5 (2)
N2—Co2—O883.29 (7)N2—C10—H10A118.8
O1—Co2—O994.50 (6)C9—C10—H10A118.8
O1W—Co2—O995.80 (7)N1—C1—C2123.0 (2)
N1—Co2—O9157.91 (7)N1—C1—H1A118.5
N2—Co2—O994.12 (7)C2—C1—H1A118.5
O8—Co2—O959.37 (6)C9—C8—C7119.6 (2)
C1—N1—C5118.4 (2)C9—C8—H8A120.2
C1—N1—Co2124.99 (16)C7—C8—H8A120.2
C5—N1—Co2116.21 (15)C1—C2—C3118.4 (2)
C10—N2—C6119.0 (2)C1—C2—H2A120.8
C10—N2—Co2124.78 (16)C3—C2—H2A120.8
C6—N2—Co2116.22 (15)O5—N3—O6122.5 (3)
N2—C6—C7121.6 (2)O5—N3—C14117.9 (3)
N2—C6—C5114.8 (2)O6—N3—C14119.3 (2)
C7—C6—C5123.6 (2)C2—C3—C4119.5 (2)
C17—O1—Co2124.66 (14)C2—C3—H3A120.3
C32—O9—Co1126.76 (14)C4—C3—H3A120.3
C32—O9—Co288.61 (13)C17—O2—Co1138.15 (16)
Co1—O9—Co2121.97 (8)C19—O4—Co1iv137.23 (17)
C16—C11—C12121.0 (2)Co2—O1W—H1WA109 (2)
C16—C11—H11A119.5Co2—O1W—H1WB111 (2)
C12—C11—H11A119.5H1WA—O1W—H1WB109 (2)
O2—C17—O1126.4 (2)C32—O8—Co292.74 (15)
O2—C17—C16116.0 (2)O8—C32—O9119.2 (2)
O1—C17—C16117.6 (2)O8—C32—C33120.5 (2)
C15—C16—C11119.6 (2)O9—C32—C33120.2 (2)
C15—C16—C17117.9 (2)C32—C33—H33A109.5
C11—C16—C17122.5 (2)C32—C33—H33B109.5
O3—C19—O4125.4 (2)H33A—C33—H33B109.5
O3—C19—C12118.0 (2)C32—C33—H33C109.5
O4—C19—C12116.6 (2)H33A—C33—H33C109.5
C13—C12—C11119.5 (2)H33B—C33—H33C109.5
D—H···AD—HH···AD···AD—H···A
O1W—H1WA···O3ii0.83 (2)1.99 (2)2.755 (3)154 (2)
O1W—H1WB···O3v0.83 (2)1.96 (2)2.762 (3)163 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1WA⋯O3i0.83 (2)1.99 (2)2.755 (3)154 (2)
O1W—H1WB⋯O3ii0.826 (18)1.96 (2)2.762 (3)163 (3)

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Poly[[mu2-aqua-bis[(1,10-phenanthroline)nickel(II)]]-di-mu2,mu4-5-nitro-1,3-benzenedicarboxylato].

Authors:  Hong-Yin He; Yi-Li Zhou; Long-Guan Zhu
Journal:  Acta Crystallogr C       Date:  2004-10-22       Impact factor: 1.172

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
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1.  Poly[[tris-(N,N-dimethyl-formamide)(μ(4)-5-nitro-isophthalato)(μ(3)-5-nitro-isophthalato)dicobalt(II)] N,N-dimethyl-formamide monosolvate].

Authors:  Meng Su; Zhan-Dong Huang; Huang Sun; Guang Yang; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-08

2.  Poly[[diaqua-bis-[μ(4)-5-nitro-isophthalato-κ(4)O(1):O(1):O(3):O(3')]bis-[μ(3)-pyridine-4-carboxyl-ato-κ(3)O:O':N]tricobalt(II)] tetra-hydrate].

Authors:  Xia Yin; Jun Fan; Jingling Xin; Shengrun Zheng; Weiguang Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-21
  2 in total

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