Literature DB >> 21583697

N-[2-(6-Methyl-4-oxo-4H-chromen-3-yl)-4-oxothia-zolidin-3-yl]furan-2-carbox-amide N,N-dimethyl-formamide solvate.

Pei-Liang Zhao1, Zhong-Zhen Zhou.   

Abstract

The title mol-ecule, C(18)H(14)N(2)O(5)S·C(3)H(7)NO, comprises of a carboxamide group bonded to a furan ring and a distorted envelope-shaped 4-oxothia-zolidin-3-yl group which is connected to a substituted 6-methyl-4-oxo-4H-chromen-3-yl group. Extensive strong N-H⋯O and weak C-H⋯O inter-molecular hydrogen-bonding inter-actions occur between dimethyl-formamide (DMF), the crystallizing solvent, and the various heterocyclic groups within the compound, as well as additional weak C-H⋯O inter-actions between the heterocyclic groups themselves. The carboxyl group of the DMF solvent mol-ecule forms a trifurcated (four-center) acceptor hydrogen-bond inter-action with the carboxamide, furan and 6-methyl-4-oxo-4H-chromen-3-yl groups. The dihedral angles between the planar chromone group [maximum deviation = 0.0377 (18)°] and those of the furan and 4-oxothia-zolidin-3-yl groups are 89.4 (6) and 78.5 (1)°, respectively.

Entities:  

Year:  2009        PMID: 21583697      PMCID: PMC2977248          DOI: 10.1107/S1600536809029572

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Zhou et al. (2005 ▶). For the preparation of the title compound, see: Zhou et al. (2008 ▶). For general background to glycoluril and its derivatives, see: Maliar et al. (2004 ▶), Zhou et al. (2007 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C18H14N2O5S·C3H7NO M = 443.48 Triclinic, a = 8.4141 (1) Å b = 11.5676 (14) Å c = 11.8382 (14) Å α = 87.138 (1)° β = 70.503 (2)° γ = 78.419 (2)° V = 1063.86 (18) Å3 Z = 2 Mo Kα radiation μ = 0.20 mm−1 T = 292 K 0.30 × 0.20 × 0.20 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008 ▶) T min = 0.934, T max = 0.962 7900 measured reflections 4568 independent reflections 3163 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.130 S = 0.96 4568 reflections 289 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.25 e Å−3 Δρmin = −0.17 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809029572/jj2002sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809029572/jj2002Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H14N2O5S·C3H7NOZ = 2
Mr = 443.48F(000) = 464
Triclinic, P1Dx = 1.384 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.4141 (1) ÅCell parameters from 2421 reflections
b = 11.5676 (14) Åθ = 2.5–26.7°
c = 11.8382 (14) ŵ = 0.20 mm1
α = 87.138 (1)°T = 292 K
β = 70.503 (2)°Block, colorless
γ = 78.419 (2)°0.30 × 0.20 × 0.20 mm
V = 1063.86 (18) Å3
Bruker SMART APEX CCD area-detector diffractometer4568 independent reflections
Radiation source: fine-focus sealed tube3163 reflections with I > 2σ(I)
graphiteRint = 0.043
φ and ω scansθmax = 27.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008)h = −10→10
Tmin = 0.934, Tmax = 0.962k = −13→14
7900 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.130H atoms treated by a mixture of independent and constrained refinement
S = 0.96w = 1/[σ2(Fo2) + (0.0676P)2] where P = (Fo2 + 2Fc2)/3
4568 reflections(Δ/σ)max < 0.001
289 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2135 (3)0.19985 (18)0.1714 (2)0.0722 (7)
H1A0.14110.17940.13090.108*
H1B0.23380.13810.22510.108*
H1C0.32100.20970.11350.108*
C20.1263 (3)0.31350 (16)0.24164 (17)0.0519 (5)
C3−0.0211 (3)0.31675 (18)0.34263 (19)0.0580 (6)
H3−0.05980.24690.36800.070*
C4−0.1099 (3)0.41904 (17)0.40512 (18)0.0542 (5)
H4−0.20820.41920.47130.065*
C5−0.0502 (2)0.52272 (16)0.36769 (16)0.0445 (4)
C60.0963 (2)0.52416 (15)0.26977 (15)0.0420 (4)
C70.1832 (3)0.41704 (16)0.20822 (16)0.0484 (5)
H70.28250.41640.14270.058*
C80.1533 (2)0.63617 (16)0.22977 (15)0.0427 (4)
C90.0433 (2)0.73858 (15)0.30060 (15)0.0414 (4)
C10−0.0936 (2)0.72643 (16)0.39626 (16)0.0467 (5)
H10−0.15730.79410.44100.056*
C110.0758 (2)0.86128 (16)0.26908 (16)0.0443 (4)
H11−0.0050.91610.33230.053*
C120.3611 (3)0.89041 (15)0.14565 (16)0.0469 (5)
C130.2766 (3)0.90147 (18)0.05140 (17)0.0573 (5)
H13A0.32360.8335−0.00270.069*
H13B0.29680.97190.00520.069*
C140.2690 (2)0.93551 (16)0.43651 (15)0.0415 (4)
C150.3436 (2)0.89915 (16)0.53174 (15)0.0430 (4)
C160.4445 (3)0.80082 (19)0.55371 (19)0.0593 (5)
H160.48430.73100.50860.071*
C170.4781 (3)0.8243 (2)0.6579 (2)0.0678 (6)
H170.54430.77280.69520.081*
C180.3975 (3)0.9337 (2)0.69290 (19)0.0650 (6)
H180.39860.97160.76000.078*
C190.7238 (4)0.6242 (3)0.1424 (3)0.1048 (10)
H19A0.66550.65440.08670.157*
H19B0.84570.60780.10130.157*
H19C0.69680.68180.20500.157*
C200.7468 (4)0.4095 (3)0.1255 (3)0.1092 (11)
H20A0.71500.34440.17560.164*
H20B0.86960.40120.09760.164*
H20C0.70740.41050.05810.164*
C210.5459 (3)0.5218 (2)0.2970 (2)0.0710 (6)
H210.51360.45070.32560.085*
N10.2489 (2)0.87432 (13)0.25530 (13)0.0442 (4)
N20.3049 (2)0.85021 (14)0.35237 (14)0.0476 (4)
H20.361 (3)0.7885 (19)0.351 (2)0.057*
N30.6696 (3)0.51810 (17)0.19314 (17)0.0676 (5)
O10.28274 (17)0.64100 (11)0.14324 (11)0.0563 (4)
O2−0.14547 (16)0.62410 (11)0.43227 (11)0.0507 (3)
O30.51047 (19)0.89574 (13)0.12709 (12)0.0630 (4)
O40.18311 (18)1.03252 (11)0.43361 (11)0.0534 (4)
O50.31260 (18)0.98314 (12)0.61700 (12)0.0576 (4)
O60.4692 (2)0.60997 (13)0.35973 (14)0.0764 (5)
S10.04994 (8)0.91011 (5)0.12526 (5)0.0628 (2)
U11U22U33U12U13U23
C10.1061 (19)0.0405 (12)0.0708 (15)−0.0139 (12)−0.0301 (14)−0.0033 (11)
C20.0703 (14)0.0380 (11)0.0530 (11)−0.0120 (10)−0.0274 (10)0.0036 (9)
C30.0755 (15)0.0429 (12)0.0618 (13)−0.0232 (11)−0.0255 (11)0.0115 (10)
C40.0597 (13)0.0518 (12)0.0518 (11)−0.0213 (10)−0.0150 (10)0.0116 (10)
C50.0506 (11)0.0418 (10)0.0418 (10)−0.0112 (9)−0.0154 (8)0.0037 (8)
C60.0508 (11)0.0376 (10)0.0395 (9)−0.0110 (8)−0.0163 (8)0.0027 (8)
C70.0585 (12)0.0419 (10)0.0436 (10)−0.0105 (9)−0.0152 (9)0.0012 (8)
C80.0508 (11)0.0412 (10)0.0370 (9)−0.0129 (9)−0.0136 (8)0.0021 (8)
C90.0510 (11)0.0369 (10)0.0365 (9)−0.0107 (8)−0.0134 (8)0.0014 (8)
C100.0516 (11)0.0379 (10)0.0460 (10)−0.0071 (9)−0.0109 (9)−0.0015 (8)
C110.0529 (11)0.0358 (10)0.0403 (10)−0.0075 (9)−0.0110 (9)−0.0008 (8)
C120.0619 (13)0.0316 (10)0.0436 (10)−0.0142 (9)−0.0098 (9)0.0003 (8)
C130.0808 (15)0.0505 (12)0.0415 (10)−0.0224 (11)−0.0167 (10)0.0060 (9)
C140.0460 (10)0.0384 (10)0.0368 (9)−0.0152 (8)−0.0053 (8)−0.0005 (8)
C150.0456 (10)0.0449 (11)0.0371 (9)−0.0163 (9)−0.0071 (8)−0.0004 (8)
C160.0659 (14)0.0550 (13)0.0594 (13)−0.0103 (11)−0.0244 (11)−0.0015 (10)
C170.0738 (16)0.0729 (16)0.0672 (14)−0.0154 (13)−0.0374 (12)0.0094 (12)
C180.0711 (15)0.0889 (18)0.0464 (12)−0.0280 (14)−0.0270 (11)0.0023 (12)
C190.118 (3)0.101 (2)0.0788 (19)−0.0156 (19)−0.0172 (18)0.0177 (17)
C200.137 (3)0.094 (2)0.0798 (19)0.016 (2)−0.0315 (19)−0.0293 (17)
C210.0858 (18)0.0557 (15)0.0702 (16)−0.0094 (13)−0.0262 (14)−0.0010 (12)
N10.0563 (10)0.0408 (9)0.0377 (8)−0.0143 (7)−0.0156 (7)0.0006 (7)
N20.0655 (11)0.0351 (9)0.0426 (8)−0.0052 (8)−0.0206 (8)−0.0017 (7)
N30.0767 (13)0.0657 (12)0.0566 (11)0.0029 (10)−0.0263 (10)−0.0027 (10)
O10.0622 (9)0.0481 (8)0.0469 (7)−0.0175 (7)0.0017 (7)−0.0035 (6)
O20.0532 (8)0.0426 (8)0.0469 (7)−0.0117 (6)−0.0030 (6)0.0020 (6)
O30.0613 (10)0.0649 (10)0.0587 (9)−0.0208 (8)−0.0099 (7)0.0031 (7)
O40.0688 (9)0.0368 (7)0.0531 (8)−0.0047 (7)−0.0206 (7)−0.0056 (6)
O50.0661 (9)0.0616 (9)0.0465 (7)−0.0110 (7)−0.0197 (7)−0.0101 (7)
O60.0965 (13)0.0516 (9)0.0663 (10)0.0032 (9)−0.0167 (9)−0.0069 (8)
S10.0733 (4)0.0633 (4)0.0590 (3)−0.0192 (3)−0.0307 (3)0.0198 (3)
C1—C21.508 (3)C13—S11.797 (2)
C1—H1A0.9600C13—H13A0.9700
C1—H1B0.9600C13—H13B0.9700
C1—H1C0.9600C14—O41.212 (2)
C2—C71.370 (2)C14—N21.354 (2)
C2—C31.401 (3)C14—C151.470 (3)
C3—C41.367 (3)C15—C161.347 (3)
C3—H30.9300C15—O51.361 (2)
C4—C51.388 (2)C16—C171.404 (3)
C4—H40.9300C16—H160.9300
C5—O21.380 (2)C17—C181.325 (3)
C5—C61.384 (2)C17—H170.9300
C6—C71.404 (3)C18—O51.363 (2)
C6—C81.473 (2)C18—H180.9300
C7—H70.9300C19—N31.430 (3)
C8—O11.230 (2)C19—H19A0.9600
C8—C91.450 (2)C19—H19B0.9600
C9—C101.344 (2)C19—H19C0.9600
C9—C111.504 (2)C20—N31.438 (3)
C10—O21.344 (2)C20—H20A0.9600
C10—H100.9300C20—H20B0.9600
C11—N11.448 (2)C20—H20C0.9600
C11—S11.8349 (19)C21—O61.224 (3)
C11—H110.9800C21—N31.315 (3)
C12—O31.216 (2)C21—H210.9300
C12—N11.356 (2)N1—N21.378 (2)
C12—C131.498 (3)N2—H20.77 (2)
C2—C1—H1A109.5C12—C13—H13B110.1
C2—C1—H1B109.5S1—C13—H13B110.1
H1A—C1—H1B109.5H13A—C13—H13B108.4
C2—C1—H1C109.5O4—C14—N2123.15 (17)
H1A—C1—H1C109.5O4—C14—C15123.24 (16)
H1B—C1—H1C109.5N2—C14—C15113.61 (17)
C7—C2—C3117.65 (18)C16—C15—O5109.77 (17)
C7—C2—C1122.10 (19)C16—C15—C14134.79 (17)
C3—C2—C1120.22 (18)O5—C15—C14115.37 (16)
C4—C3—C2122.26 (18)C15—C16—C17106.6 (2)
C4—C3—H3118.9C15—C16—H16126.7
C2—C3—H3118.9C17—C16—H16126.7
C3—C4—C5118.60 (18)C18—C17—C16106.9 (2)
C3—C4—H4120.7C18—C17—H17126.5
C5—C4—H4120.7C16—C17—H17126.5
O2—C5—C6121.90 (15)C17—C18—O5110.6 (2)
O2—C5—C4116.58 (16)C17—C18—H18124.7
C6—C5—C4121.52 (18)O5—C18—H18124.7
C5—C6—C7117.91 (16)N3—C19—H19A109.5
C5—C6—C8120.29 (16)N3—C19—H19B109.5
C7—C6—C8121.76 (16)H19A—C19—H19B109.5
C2—C7—C6122.04 (18)N3—C19—H19C109.5
C2—C7—H7119.0H19A—C19—H19C109.5
C6—C7—H7119.0H19B—C19—H19C109.5
O1—C8—C9123.67 (16)N3—C20—H20A109.5
O1—C8—C6122.18 (17)N3—C20—H20B109.5
C9—C8—C6114.14 (15)H20A—C20—H20B109.5
C10—C9—C8120.52 (16)N3—C20—H20C109.5
C10—C9—C11117.78 (16)H20A—C20—H20C109.5
C8—C9—C11121.69 (15)H20B—C20—H20C109.5
O2—C10—C9125.11 (17)O6—C21—N3126.2 (2)
O2—C10—H10117.4O6—C21—H21116.9
C9—C10—H10117.4N3—C21—H21116.9
N1—C11—C9113.96 (16)C12—N1—N2120.45 (16)
N1—C11—S1103.67 (11)C12—N1—C11120.75 (16)
C9—C11—S1113.20 (12)N2—N1—C11117.91 (14)
N1—C11—H11109.0C14—N2—N1119.57 (15)
C9—C11—H11109.0C14—N2—H2125.4 (17)
S1—C11—H11109.0N1—N2—H2114.9 (17)
O3—C12—N1124.01 (19)C21—N3—C19120.1 (2)
O3—C12—C13124.74 (17)C21—N3—C20121.3 (2)
N1—C12—C13111.25 (17)C19—N3—C20118.6 (2)
C12—C13—S1108.00 (13)C10—O2—C5117.98 (14)
C12—C13—H13A110.1C15—O5—C18106.03 (16)
S1—C13—H13A110.1C13—S1—C1193.51 (9)
C7—C2—C3—C41.8 (3)N2—C14—C15—C162.3 (3)
C1—C2—C3—C4−176.30 (19)O4—C14—C15—O5−1.2 (2)
C2—C3—C4—C5−0.8 (3)N2—C14—C15—O5178.98 (14)
C3—C4—C5—O2178.99 (17)O5—C15—C16—C170.1 (2)
C3—C4—C5—C6−0.3 (3)C14—C15—C16—C17177.0 (2)
O2—C5—C6—C7−178.88 (16)C15—C16—C17—C18−0.1 (2)
C4—C5—C6—C70.4 (3)C16—C17—C18—O50.1 (3)
O2—C5—C6—C8−1.3 (3)O3—C12—N1—N2−7.0 (3)
C4—C5—C6—C8178.01 (17)C13—C12—N1—N2173.40 (15)
C3—C2—C7—C6−1.7 (3)O3—C12—N1—C11−175.98 (17)
C1—C2—C7—C6176.35 (18)C13—C12—N1—C114.4 (2)
C5—C6—C7—C20.6 (3)C9—C11—N1—C12109.33 (18)
C8—C6—C7—C2−176.91 (17)S1—C11—N1—C12−14.16 (19)
C5—C6—C8—O1180.00 (18)C9—C11—N1—N2−59.9 (2)
C7—C6—C8—O1−2.5 (3)S1—C11—N1—N2176.57 (11)
C5—C6—C8—C9−0.4 (2)O4—C14—N2—N12.9 (3)
C7—C6—C8—C9177.10 (16)C15—C14—N2—N1−177.28 (14)
O1—C8—C9—C10−178.07 (19)C12—N1—N2—C14105.6 (2)
C6—C8—C9—C102.3 (3)C11—N1—N2—C14−85.1 (2)
O1—C8—C9—C113.0 (3)O6—C21—N3—C19−1.2 (4)
C6—C8—C9—C11−176.62 (16)O6—C21—N3—C20−178.0 (2)
C8—C9—C10—O2−2.8 (3)C9—C10—O2—C51.0 (3)
C11—C9—C10—O2176.18 (16)C6—C5—O2—C101.1 (3)
C10—C9—C11—N1127.95 (18)C4—C5—O2—C10−178.26 (16)
C8—C9—C11—N1−53.1 (2)C16—C15—O5—C18−0.1 (2)
C10—C9—C11—S1−113.90 (17)C14—C15—O5—C18−177.62 (15)
C8—C9—C11—S165.1 (2)C17—C18—O5—C150.0 (2)
O3—C12—C13—S1−171.45 (16)C12—C13—S1—C11−13.78 (14)
N1—C12—C13—S18.17 (19)N1—C11—S1—C1315.17 (13)
O4—C14—C15—C16−177.9 (2)C9—C11—S1—C13−108.82 (14)
D—H···AD—HH···AD···AD—H···A
N2—H2···O60.77 (2)2.10 (2)2.856 (2)169 (2)
C4—H4···O6i0.932.503.421 (3)172
C10—H10···O4ii0.932.493.332 (2)151
C11—H11···O5ii0.982.503.267 (2)135 (1)
C13—H13B···O3iii0.972.553.441 (2)153
C16—H16···O60.932.363.193 (3)150
C18—H18···O3iv0.932.473.342 (3)157
C20—H20C···O1v0.962.463.361 (3)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O60.77 (2)2.10 (2)2.856 (2)169 (2)
C4—H4⋯O6i0.932.503.421 (3)172
C10—H10⋯O4ii0.932.493.332 (2)151
C11—H11⋯O5ii0.982.503.267 (2)135 (1)
C13—H13B⋯O3iii0.972.553.441 (2)153
C16—H16⋯O60.932.363.193 (3)150
C18—H18⋯O3iv0.932.473.342 (3)157
C20—H20C⋯O1v0.962.463.361 (3)157

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Structural aspects of flavonoids as trypsin inhibitors.

Authors:  Tibor Maliar; Andrej Jedinák; Jana Kadrabová; Ernest Sturdík
Journal:  Eur J Med Chem       Date:  2004-03       Impact factor: 6.514

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.