Literature DB >> 21583688

(E)-3-(2-Hydr-oxy-3-methoxy-benzyl-idene-amino)benzonitrile.

Jian-Cheng Zhou1, Chuan-Ming Zhang, Zheng-Yun Zhang, Nai-Xu Li.   

Abstract

The mol-ecule of the title compound, C(15)H(12)N(2)O(2), displays a trans configuration with respect to the C=N double bond. The dihedral angle between the two benzene rings is 30.46 (14)°. A strong intra-molecular O-H⋯O hydrogen bond stabilizes the mol-ecular structure.

Entities:  

Year:  2009        PMID: 21583688      PMCID: PMC2977331          DOI: 10.1107/S1600536809029225

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the magnetic and biological properties of Schiff bases, see: May et al. (2004 ▶); Weber et al. (2007 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C15H12N2O2 M = 252.27 Monoclinic, a = 15.476 (5) Å b = 5.9927 (19) Å c = 15.413 (7) Å β = 116.127 (3)° V = 1283.5 (8) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.20 × 0.20 × 0.10 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.973, T max = 0.991 5235 measured reflections 1470 independent reflections 1808 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.124 S = 1.03 1470 reflections 172 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809029225/rz2356sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809029225/rz2356Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H12N2O2F(000) = 528
Mr = 252.27Dx = 1.306 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 1698 reflections
a = 15.476 (5) Åθ = 3.1–27.3°
b = 5.9927 (19) ŵ = 0.09 mm1
c = 15.413 (7) ÅT = 293 K
β = 116.127 (3)°Block, yellow
V = 1283.5 (8) Å30.20 × 0.20 × 0.10 mm
Z = 4
Bruker SMART APEX CCD area-detector diffractometer1470 independent reflections
Radiation source: fine-focus sealed tube1808 reflections with I > 2σ(I)
graphiteRint = 0.022
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 2.9°
φ and ω scansh = −20→20
Absorption correction: multi-scan (SADABS; Bruker,2000)k = −7→7
Tmin = 0.973, Tmax = 0.991l = −19→19
5235 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.124H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0766P)2] where P = (Fo2 + 2Fc2)/3
1470 reflections(Δ/σ)max < 0.001
172 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.49736 (19)0.0595 (4)0.27600 (18)0.0540 (6)
C20.3732 (2)−0.3128 (5)0.1960 (2)0.0509 (7)
O10.37225 (17)−0.2232 (4)0.27625 (16)0.0617 (6)
H1A0.3362−0.29590.29150.093*
C10.4293 (2)−0.2203 (5)0.1547 (2)0.0516 (8)
C30.3177 (2)−0.5039 (6)0.1545 (2)0.0549 (7)
C80.4899 (2)−0.0288 (5)0.1971 (2)0.0538 (7)
H8A0.52440.03220.16640.065*
C60.4292 (3)−0.3209 (6)0.0714 (2)0.0607 (8)
H6A0.4662−0.26020.04330.073*
C40.3194 (2)−0.5982 (6)0.0740 (2)0.0613 (9)
H4A0.2830−0.72520.04680.074*
O20.26595 (18)−0.5821 (4)0.20096 (17)0.0703 (7)
C90.5623 (2)0.2388 (5)0.3193 (2)0.0497 (7)
C110.5989 (2)0.5663 (5)0.4178 (2)0.0536 (8)
C100.5378 (2)0.3913 (5)0.3722 (2)0.0520 (7)
H10A0.48030.37580.37700.062*
C120.6857 (3)0.5916 (6)0.4126 (3)0.0623 (8)
H12A0.72670.70990.44340.075*
C50.3752 (2)−0.5055 (7)0.0327 (2)0.0663 (9)
H5A0.3754−0.5709−0.02190.080*
C70.2045 (3)−0.7693 (6)0.1576 (3)0.0754 (11)
H7A0.1716−0.80940.19550.113*
H7B0.2425−0.89330.15490.113*
H7C0.1583−0.73090.09340.113*
C130.7098 (3)0.4369 (6)0.3605 (2)0.0641 (9)
H13A0.76780.45130.35650.077*
C140.6495 (2)0.2616 (6)0.3144 (2)0.0583 (8)
H14A0.66700.15830.28000.070*
C150.5744 (3)0.7276 (6)0.4731 (2)0.0616 (9)
N20.5552 (3)0.8546 (6)0.5162 (3)0.0899 (11)
U11U22U33U12U13U23
N10.0569 (15)0.0522 (14)0.0546 (13)0.0032 (12)0.0259 (11)−0.0012 (11)
C20.0500 (17)0.0543 (17)0.0498 (16)0.0108 (14)0.0231 (14)−0.0003 (13)
O10.0663 (14)0.0705 (14)0.0604 (12)−0.0002 (11)0.0389 (11)−0.0077 (11)
C10.0483 (17)0.0575 (19)0.0494 (16)0.0080 (13)0.0218 (14)−0.0031 (13)
C30.0488 (18)0.0570 (19)0.0581 (18)0.0041 (15)0.0226 (14)−0.0006 (15)
C80.0562 (18)0.0572 (18)0.0514 (16)0.0041 (15)0.0266 (14)−0.0009 (14)
C60.0557 (18)0.076 (2)0.0547 (17)−0.0003 (17)0.0283 (15)−0.0140 (16)
C40.057 (2)0.059 (2)0.0614 (19)0.0009 (16)0.0197 (16)−0.0090 (15)
O20.0728 (16)0.0706 (16)0.0700 (14)−0.0105 (13)0.0336 (12)−0.0020 (11)
C90.0571 (19)0.0498 (18)0.0434 (14)0.0009 (14)0.0234 (14)0.0012 (12)
C110.062 (2)0.0524 (18)0.0500 (16)0.0002 (14)0.0278 (15)0.0015 (12)
C100.0583 (19)0.0550 (18)0.0480 (15)−0.0007 (15)0.0281 (14)0.0001 (13)
C120.061 (2)0.066 (2)0.0612 (18)−0.0053 (18)0.0280 (16)0.0001 (16)
C50.063 (2)0.078 (2)0.0588 (18)0.0064 (19)0.0274 (17)−0.0169 (17)
C70.067 (2)0.061 (2)0.087 (3)−0.0073 (19)0.023 (2)0.0085 (19)
C130.055 (2)0.077 (2)0.0641 (19)0.0004 (18)0.0303 (17)0.0022 (17)
C140.062 (2)0.061 (2)0.0599 (18)0.0086 (16)0.0333 (17)−0.0002 (14)
C150.069 (2)0.062 (2)0.0601 (18)−0.0129 (16)0.0340 (17)−0.0106 (16)
N20.103 (3)0.091 (2)0.097 (2)−0.026 (2)0.063 (2)−0.037 (2)
N1—C81.284 (4)C9—C101.383 (4)
N1—C91.421 (4)C9—C141.391 (5)
C2—O11.354 (4)C11—C101.379 (4)
C2—C11.397 (4)C11—C121.389 (5)
C2—C31.405 (5)C11—C151.445 (5)
O1—H1A0.8200C10—H10A0.9300
C1—C61.418 (4)C12—C131.381 (5)
C1—C81.444 (5)C12—H12A0.9300
C3—O21.371 (4)C5—H5A0.9300
C3—C41.374 (5)C7—H7A0.9600
C8—H8A0.9300C7—H7B0.9600
C6—C51.356 (5)C7—H7C0.9600
C6—H6A0.9300C13—C141.377 (5)
C4—C51.393 (5)C13—H13A0.9300
C4—H4A0.9300C14—H14A0.9300
O2—C71.432 (4)C15—N21.134 (4)
C8—N1—C9120.4 (3)C10—C11—C15120.7 (3)
O1—C2—C1121.2 (3)C12—C11—C15118.2 (3)
O1—C2—C3119.3 (3)C9—C10—C11119.9 (3)
C1—C2—C3119.5 (3)C9—C10—H10A120.0
C2—O1—H1A109.5C11—C10—H10A120.0
C2—C1—C6119.4 (3)C13—C12—C11118.4 (3)
C2—C1—C8121.3 (3)C13—C12—H12A120.8
C6—C1—C8119.3 (3)C11—C12—H12A120.8
O2—C3—C4125.4 (3)C6—C5—C4120.7 (3)
O2—C3—C2114.9 (3)C6—C5—H5A119.7
C4—C3—C2119.7 (3)C4—C5—H5A119.7
N1—C8—C1121.7 (3)O2—C7—H7A109.5
N1—C8—H8A119.2O2—C7—H7B109.5
C1—C8—H8A119.2H7A—C7—H7B109.5
C5—C6—C1120.0 (3)O2—C7—H7C109.5
C5—C6—H6A120.0H7A—C7—H7C109.5
C1—C6—H6A120.0H7B—C7—H7C109.5
C3—C4—C5120.7 (3)C14—C13—C12121.1 (3)
C3—C4—H4A119.7C14—C13—H13A119.5
C5—C4—H4A119.7C12—C13—H13A119.5
C3—O2—C7116.4 (3)C13—C14—C9120.1 (3)
C10—C9—C14119.4 (3)C13—C14—H14A120.0
C10—C9—N1117.1 (3)C9—C14—H14A120.0
C14—C9—N1123.4 (3)N2—C15—C11179.8 (4)
C10—C11—C12121.1 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1A···O20.822.182.645 (4)117
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯O20.822.182.645 (4)117
  2 in total

1.  Covalent Schiff base catalysis and turnover by a DNAzyme: a M2+ -independent AP-endonuclease mimic.

Authors:  Jonathan P May; Richard Ting; Leonard Lermer; Jason M Thomas; Yoann Roupioz; David M Perrin
Journal:  J Am Chem Soc       Date:  2004-04-07       Impact factor: 15.419

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total

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