Literature DB >> 21583683

(2R,4R)-2-Hydr-oxy-4-(2-methoxy-phen-yl)bicyclo-[3.3.1]nonan-9-one.

Shuping Luo1, Guangcun Zhang, Shuai Zhang, Yifeng Wang, Wei Zhang.   

Abstract

The title compound, C(16)H(20)O(3), contains a bicyclic ring system with two chiral centers. The crystal structure is stabilized by inter-molecular O-H⋯O hydrogen bonds. The absolute configuration was established by the stereo-selectivity of the asymmetric organocatalysis.

Entities:  

Year:  2009        PMID: 21583683      PMCID: PMC2977292          DOI: 10.1107/S1600536809028980

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

A similar structure is described by Cao et al. (2007 ▶). For general background to organocatalysis, see: List et al. (2000 ▶, 2001 ▶); Notz et al. (2001 ▶).

Experimental

Crystal data

C16H20O3 M = 260.33 Orthorhombic, a = 6.9378 (5) Å b = 12.5291 (11) Å c = 16.0726 (14) Å V = 1397.1 (2) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.47 × 0.32 × 0.29 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.945, T max = 0.976 13314 measured reflections 1840 independent reflections 1211 reflections with F 2 > 2σ(F 2) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.061 S = 1.00 1840 reflections 173 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.13 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 2006 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶), and Larson (1970 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: CRYSTALS (Watkin et al., 1996 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: CrystalStructure (Rigaku/MSC, 2004 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809028980/zl2227sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809028980/zl2227Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H20O3F(000) = 560.00
Mr = 260.33Dx = 1.238 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71075 Å
Hall symbol: P 2ac 2abCell parameters from 8871 reflections
a = 6.9378 (5) Åθ = 3.0–27.4°
b = 12.5291 (11) ŵ = 0.08 mm1
c = 16.0726 (14) ÅT = 296 K
V = 1397.1 (2) Å3Chunk, colorless
Z = 40.47 × 0.32 × 0.29 mm
Rigaku R-AXIS RAPID diffractometer1211 reflections with F2 > 2σ(F2)
Detector resolution: 10.00 pixels mm-1Rint = 0.034
ω scansθmax = 27.4°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −8→8
Tmin = 0.945, Tmax = 0.976k = −16→16
13314 measured reflectionsl = −20→20
1840 independent reflections
Refinement on F2w = 1/[1.01σ(Fo2)]/(4Fo2)
R[F2 > 2σ(F2)] = 0.032(Δ/σ)max < 0.001
wR(F2) = 0.061Δρmax = 0.16 e Å3
S = 1.00Δρmin = −0.13 e Å3
1840 reflectionsExtinction correction: Larson (1970), equation 22
173 parametersExtinction coefficient: 649 (27)
H-atom parameters constrained
Geometry. ENTER SPECIAL DETAILS OF THE MOLECULAR GEOMETRY
Refinement. Refinement using all reflections. The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt).
xyzUiso*/Ueq
O10.3084 (2)−0.19303 (10)0.07830 (9)0.0638 (4)
O2−0.1217 (2)−0.10943 (12)0.00114 (9)0.0622 (4)
O3−0.10291 (19)0.08144 (11)0.23327 (8)0.0593 (4)
C10.1869 (2)0.03037 (14)0.12399 (11)0.0390 (5)
C20.3817 (2)−0.00912 (14)0.09036 (12)0.0457 (5)
C30.3617 (2)−0.10201 (16)0.02981 (12)0.0476 (5)
C40.2100 (2)−0.08335 (16)−0.03793 (12)0.0472 (5)
C50.2559 (3)0.00623 (18)−0.10098 (12)0.0601 (6)
C60.2481 (3)0.11937 (17)−0.06523 (13)0.0657 (7)
C70.0787 (3)0.13738 (16)−0.00841 (12)0.0599 (6)
C80.0362 (2)0.04651 (14)0.05297 (12)0.0433 (5)
C90.0240 (2)−0.05569 (16)0.00463 (12)0.0440 (5)
C100.1996 (2)0.12898 (14)0.17882 (11)0.0388 (5)
C110.3544 (2)0.19787 (16)0.17853 (12)0.0519 (6)
C120.3625 (3)0.28667 (17)0.23012 (12)0.0653 (7)
C130.2124 (3)0.30819 (18)0.28234 (13)0.0632 (7)
C140.0528 (3)0.24199 (16)0.28470 (12)0.0527 (6)
C150.0475 (2)0.15310 (14)0.23345 (12)0.0437 (5)
C16−0.2463 (2)0.0914 (2)0.29575 (13)0.0707 (7)
H10.1366−0.02700.15930.047*
H30.4868−0.11550.00350.057*
H40.1918−0.1502−0.06870.057*
H8−0.08970.05990.07850.052*
H110.45670.18450.14260.062*
H120.46970.33120.22910.078*
H130.21740.36790.31670.076*
H14−0.04950.25700.32020.063*
H210.4604−0.03200.13690.055*
H220.44480.04950.06190.055*
H510.3847−0.0058−0.12260.072*
H520.16340.0017−0.14610.072*
H610.36550.1322−0.03410.079*
H620.23990.1696−0.11100.079*
H71−0.03480.1477−0.04270.072*
H720.10320.20160.02360.072*
H1010.3263−0.24880.04980.077*
H161−0.32430.02820.29670.085*
H162−0.18560.10070.34890.085*
H163−0.32600.15220.28390.085*
U11U22U33U12U13U23
O10.0884 (9)0.0367 (7)0.0664 (9)0.0155 (8)0.0188 (8)0.0031 (7)
O20.0536 (7)0.0633 (10)0.0698 (10)−0.0144 (8)−0.0018 (8)−0.0159 (9)
O30.0580 (7)0.0607 (9)0.0591 (9)−0.0141 (8)0.0173 (7)−0.0219 (7)
C10.0433 (9)0.0327 (10)0.0410 (10)0.0023 (8)0.0029 (8)−0.0021 (8)
C20.0448 (10)0.0422 (11)0.0502 (12)0.0061 (10)−0.0038 (9)−0.0003 (10)
C30.0494 (11)0.0398 (11)0.0537 (12)0.0076 (10)0.0110 (10)−0.0023 (10)
C40.0553 (11)0.0392 (11)0.0472 (11)−0.0009 (10)0.0070 (10)−0.0121 (9)
C50.0638 (13)0.0677 (14)0.0488 (12)0.0024 (13)0.0070 (11)0.0001 (11)
C60.0879 (16)0.0525 (14)0.0566 (14)−0.0027 (14)−0.0052 (13)0.0114 (12)
C70.0857 (15)0.0436 (12)0.0503 (12)0.0147 (12)−0.0154 (12)−0.0024 (11)
C80.0421 (9)0.0428 (11)0.0452 (10)0.0068 (9)−0.0030 (9)−0.0122 (10)
C90.0454 (10)0.0447 (11)0.0420 (11)−0.0015 (10)−0.0025 (9)−0.0042 (10)
C100.0491 (10)0.0333 (10)0.0341 (9)0.0000 (9)−0.0037 (9)−0.0003 (8)
C110.0595 (12)0.0452 (11)0.0509 (12)−0.0091 (11)0.0081 (10)−0.0048 (10)
C120.0772 (14)0.0512 (14)0.0675 (15)−0.0229 (13)0.0124 (13)−0.0159 (12)
C130.0856 (15)0.0440 (13)0.0600 (14)−0.0115 (13)0.0037 (13)−0.0156 (11)
C140.0650 (13)0.0442 (12)0.0488 (12)0.0023 (11)0.0065 (11)−0.0104 (10)
C150.0519 (11)0.0396 (11)0.0397 (11)−0.0022 (9)−0.0024 (10)−0.0023 (10)
C160.0503 (12)0.0801 (17)0.0816 (16)−0.0057 (13)0.0152 (12)−0.0221 (14)
O1—C31.430 (2)O1—H1010.846
O2—C91.216 (2)C1—H10.980
O3—C151.376 (2)C2—H210.970
O3—C161.419 (2)C2—H220.970
C1—C21.537 (2)C3—H30.980
C1—C81.561 (2)C4—H40.980
C1—C101.520 (2)C5—H510.970
C2—C31.523 (2)C5—H520.970
C3—C41.533 (2)C6—H610.970
C4—C51.545 (2)C6—H620.970
C4—C91.501 (2)C7—H710.970
C5—C61.531 (3)C7—H720.970
C6—C71.505 (3)C8—H80.980
C7—C81.535 (2)C11—H110.930
C8—C91.500 (2)C12—H120.930
C10—C111.378 (2)C13—H130.930
C10—C151.406 (2)C14—H140.930
C11—C121.389 (2)C16—H1610.960
C12—C131.365 (3)C16—H1620.960
C13—C141.384 (3)C16—H1630.960
C14—C151.386 (2)
C15—O3—C16118.18 (15)O1—C3—H3109.1
C2—C1—C8111.91 (14)C2—C3—H3109.1
C2—C1—C10114.46 (14)C4—C3—H3109.1
C8—C1—C10110.96 (14)C3—C4—H4108.4
C1—C2—C3112.99 (15)C5—C4—H4108.4
O1—C3—C2106.53 (15)C9—C4—H4108.4
O1—C3—C4109.33 (15)C4—C5—H51108.1
C2—C3—C4113.56 (16)C4—C5—H52108.1
C3—C4—C5115.78 (16)C6—C5—H51108.1
C3—C4—C9107.58 (15)C6—C5—H52108.1
C5—C4—C9107.97 (16)H51—C5—H52109.5
C4—C5—C6114.78 (17)C5—C6—H61108.5
C5—C6—C7113.23 (18)C5—C6—H62108.5
C6—C7—C8115.36 (16)C7—C6—H61108.5
C1—C8—C7115.97 (15)C7—C6—H62108.5
C1—C8—C9107.82 (15)H61—C6—H62109.5
C7—C8—C9108.12 (15)C6—C7—H71108.0
O2—C9—C4124.46 (18)C6—C7—H72108.0
O2—C9—C8122.92 (17)C8—C7—H71108.0
C4—C9—C8112.62 (15)C8—C7—H72108.0
C1—C10—C11123.56 (16)H71—C7—H72109.5
C1—C10—C15119.53 (16)C1—C8—H8108.2
C11—C10—C15116.91 (17)C7—C8—H8108.2
C10—C11—C12122.11 (19)C9—C8—H8108.2
C11—C12—C13119.6 (2)C10—C11—H11118.9
C12—C13—C14120.6 (2)C12—C11—H11118.9
C13—C14—C15119.12 (19)C11—C12—H12120.2
O3—C15—C10115.32 (16)C13—C12—H12120.2
O3—C15—C14123.07 (17)C12—C13—H13119.7
C10—C15—C14121.60 (17)C14—C13—H13119.7
C3—O1—H101109.0C13—C14—H14120.4
C2—C1—H1106.3C15—C14—H14120.4
C8—C1—H1106.3O3—C16—H161109.5
C10—C1—H1106.3O3—C16—H162109.5
C1—C2—H21108.6O3—C16—H163109.5
C1—C2—H22108.6H161—C16—H162109.5
C3—C2—H21108.6H161—C16—H163109.5
C3—C2—H22108.6H162—C16—H163109.5
H21—C2—H22109.5
C16—O3—C15—C10170.27 (16)C5—C4—C9—C8−62.1 (2)
C16—O3—C15—C14−8.4 (2)C9—C4—C5—C650.9 (2)
C2—C1—C8—C7−67.5 (2)C4—C5—C6—C7−42.5 (2)
C2—C1—C8—C953.83 (19)C5—C6—C7—C842.9 (2)
C8—C1—C2—C3−47.7 (2)C6—C7—C8—C169.4 (2)
C2—C1—C10—C1119.8 (2)C6—C7—C8—C9−51.8 (2)
C2—C1—C10—C15−160.11 (16)C1—C8—C9—O2116.16 (19)
C10—C1—C2—C3−175.04 (15)C1—C8—C9—C4−63.67 (19)
C8—C1—C10—C11−108.0 (2)C7—C8—C9—O2−117.7 (2)
C8—C1—C10—C1572.1 (2)C7—C8—C9—C462.4 (2)
C10—C1—C8—C761.7 (2)C1—C10—C11—C12−179.26 (18)
C10—C1—C8—C9−176.97 (14)C1—C10—C15—O31.2 (2)
C1—C2—C3—O1−71.93 (19)C1—C10—C15—C14179.90 (17)
C1—C2—C3—C448.5 (2)C11—C10—C15—O3−178.77 (16)
O1—C3—C4—C5−174.64 (15)C11—C10—C15—C14−0.0 (2)
O1—C3—C4—C964.54 (19)C15—C10—C11—C120.7 (2)
C2—C3—C4—C566.5 (2)C10—C11—C12—C13−0.9 (3)
C2—C3—C4—C9−54.3 (2)C11—C12—C13—C140.4 (3)
C3—C4—C5—C6−69.7 (2)C12—C13—C14—C150.2 (3)
C3—C4—C9—O2−116.3 (2)C13—C14—C15—O3178.22 (18)
C3—C4—C9—C863.5 (2)C13—C14—C15—C10−0.4 (2)
C5—C4—C9—O2118.0 (2)
D—H···AD—HH···AD···AD—H···A
O1—H101···O2i0.851.992.8268 (19)171
O1ii—H101ii···O20.851.992.8268 (19)171
C14—H14···O1iii0.932.513.434 (2)176
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H101⋯O2i0.851.992.8268 (19)171
O1ii—H101ii⋯O20.851.992.8268 (19)171
C14—H14⋯O1iii0.932.513.434 (2)176

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  Efficient proline-catalyzed Michael additions of unmodified ketones to nitro olefins.

Authors:  B List; P Pojarliev; H J Martin
Journal:  Org Lett       Date:  2001-08-09       Impact factor: 6.005

2.  Enantioselective formal [3+3] annulation for the direct construction of bicyclic skeletons with four stereogenic centers.

Authors:  Chun-Li Cao; Xiu-Li Sun; Yan-Biao Kang; Yong Tang
Journal:  Org Lett       Date:  2007-09-15       Impact factor: 6.005

  2 in total

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