Literature DB >> 21583667

1-Chloro-acetyl-2,6-bis-(3-fluoro-phen-yl)piperidin-4-one.

G Aridoss, D Gayathri, D Velmurugan, M S Kim, Yeon Tae Jeong.   

Abstract

In the title compound C(19)H(16)ClF(2)NO(2), the piperidone ring adopts a twist-boat conformation with the two out-of-plane atoms deviating by 0.544 (1) and 0.511 (1) Å from the plane through the remaining atoms in the ring. Sterically favoured non-H-atom C⋯O inter-molecular contacts are observed in the structure, within a 3.00 Å range. The crystal packing is stabilized by C-H⋯O and C-H⋯F hydrogen bonds and an inter-molecular π-π inter-action [centroid-centroid separation of 3.783 (1) Å]. Alternating C-H⋯O and C-H⋯F inter-molecular inter-actions generate chains running along the a axis, while a centrosymmetric R(2) (2)(16) ring involving C-H⋯O inter-actions is formed centred at (1/2, 1/2, 0).

Entities:  

Year:  2009        PMID: 21583667      PMCID: PMC2977122          DOI: 10.1107/S1600536809028529

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological activity of piperidines and piperidones and their derivatives, see: Richardo et al. (1979 ▶); Schneider (1996 ▶); Mukhtar & Wright (2005 ▶); Fleet et al. (1990 ▶); Winkler & Holan (1989 ▶); Aridoss et al. (2007a ▶, 2008 ▶, 2009a ▶). For related structures, see: Gayathri et al. (2008 ▶); Ramachandran et al. (2008 ▶); Aridoss et al. (2009b ▶). For the synthesis and stereochemistry, see: Krishnapillay et al. (2000 ▶); Aridoss et al. (2007b ▶). For ring conformational analysis, see: Cremer & Pople (1975 ▶); Nardelli (1983 ▶).

Experimental

Crystal data

C19H16ClF2NO2 M = 363.78 Monoclinic, a = 10.7026 (8) Å b = 8.2017 (6) Å c = 19.0447 (15) Å β = 100.629 (1)° V = 1643.1 (2) Å3 Z = 4 Mo Kα radiation μ = 0.27 mm−1 T = 293 K 0.29 × 0.25 × 0.22 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: none 18143 measured reflections 3875 independent reflections 3515 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.111 S = 1.03 3875 reflections 226 parameters H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.35 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97 and PARST (Nardelli, 1995 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809028529/bg2281sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809028529/bg2281Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H16ClF2NO2F(000) = 752
Mr = 363.78Dx = 1.471 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2558 reflections
a = 10.7026 (8) Åθ = 2.0–28.1°
b = 8.2017 (6) ŵ = 0.27 mm1
c = 19.0447 (15) ÅT = 293 K
β = 100.629 (1)°Block, colorless
V = 1643.1 (2) Å30.29 × 0.25 × 0.22 mm
Z = 4
Bruker SMART APEX diffractometer3515 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.018
graphiteθmax = 28.1°, θmin = 2.0°
ω scansh = −14→13
18143 measured reflectionsk = −10→10
3875 independent reflectionsl = −25→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.111H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0604P)2 + 0.4707P] where P = (Fo2 + 2Fc2)/3
3875 reflections(Δ/σ)max < 0.001
226 parametersΔρmax = 0.34 e Å3
0 restraintsΔρmin = −0.35 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.19220 (11)0.60188 (15)0.12209 (7)0.0342 (3)
H10.16330.49070.12910.041*
C20.14537 (12)0.70807 (17)0.17787 (7)0.0391 (3)
H2A0.05320.71010.16800.047*
H2B0.17250.66010.22480.047*
C30.19437 (12)0.87902 (16)0.17849 (6)0.0355 (3)
C40.31441 (12)0.89729 (15)0.14859 (7)0.0366 (3)
H4A0.36050.99170.17050.044*
H4B0.29140.91840.09770.044*
C50.40356 (11)0.74875 (14)0.15997 (6)0.0315 (2)
H50.43930.74000.21110.038*
C60.38663 (12)0.44552 (15)0.14846 (6)0.0342 (3)
C70.52903 (13)0.44165 (16)0.17627 (8)0.0437 (3)
H7A0.54780.49800.22180.052*
H7B0.57220.49860.14300.052*
C80.14016 (11)0.64593 (15)0.04440 (7)0.0359 (3)
C90.18650 (13)0.56233 (18)−0.00921 (8)0.0438 (3)
H90.24970.48390.00240.053*
C100.13769 (15)0.5973 (2)−0.07922 (8)0.0497 (3)
C110.04478 (16)0.7120 (2)−0.09979 (8)0.0530 (4)
H110.01470.7346−0.14780.064*
C12−0.00203 (16)0.7923 (2)−0.04692 (9)0.0548 (4)
H12−0.06590.8695−0.05930.066*
C130.04442 (14)0.76014 (18)0.02456 (8)0.0459 (3)
H130.01120.81560.05960.055*
C140.51171 (11)0.78384 (15)0.12008 (7)0.0330 (2)
C150.62680 (12)0.84067 (18)0.15766 (8)0.0420 (3)
H150.64150.84800.20720.050*
C160.71890 (13)0.8861 (2)0.11948 (9)0.0528 (4)
C170.70255 (15)0.8775 (2)0.04699 (10)0.0558 (4)
H170.76670.90980.02310.067*
C180.58841 (15)0.8196 (2)0.01009 (8)0.0507 (4)
H180.57510.8119−0.03940.061*
C190.49307 (14)0.77279 (17)0.04628 (7)0.0416 (3)
H190.41630.73380.02090.050*
N10.33311 (9)0.59708 (12)0.13708 (5)0.0316 (2)
O10.14246 (10)0.99449 (13)0.20033 (6)0.0477 (2)
O20.32477 (10)0.32101 (12)0.13649 (6)0.0467 (2)
F10.18216 (12)0.51239 (17)−0.13076 (6)0.0785 (3)
F20.83117 (10)0.9428 (2)0.15588 (7)0.0907 (4)
Cl10.58658 (4)0.24037 (5)0.18722 (3)0.06261 (15)
U11U22U33U12U13U23
C10.0292 (5)0.0319 (6)0.0411 (6)−0.0020 (4)0.0055 (5)0.0025 (5)
C20.0355 (6)0.0431 (7)0.0411 (6)0.0005 (5)0.0129 (5)0.0045 (5)
C30.0356 (6)0.0407 (7)0.0299 (5)0.0040 (5)0.0056 (4)−0.0001 (5)
C40.0389 (6)0.0302 (6)0.0422 (6)−0.0006 (5)0.0118 (5)−0.0019 (5)
C50.0318 (6)0.0319 (6)0.0309 (5)−0.0024 (4)0.0060 (4)−0.0012 (4)
C60.0375 (6)0.0327 (6)0.0328 (5)0.0023 (5)0.0075 (5)0.0006 (4)
C70.0392 (7)0.0337 (6)0.0572 (8)0.0069 (5)0.0060 (6)0.0044 (6)
C80.0310 (6)0.0328 (6)0.0420 (6)−0.0048 (5)0.0020 (5)−0.0005 (5)
C90.0399 (7)0.0435 (7)0.0458 (7)0.0008 (5)0.0021 (5)−0.0040 (6)
C100.0496 (8)0.0558 (9)0.0434 (7)−0.0096 (7)0.0075 (6)−0.0066 (6)
C110.0545 (8)0.0570 (9)0.0425 (7)−0.0111 (7)−0.0043 (6)0.0087 (7)
C120.0507 (8)0.0511 (8)0.0571 (9)0.0078 (7)−0.0045 (7)0.0090 (7)
C130.0414 (7)0.0447 (8)0.0495 (8)0.0051 (6)0.0026 (6)0.0006 (6)
C140.0319 (6)0.0297 (5)0.0383 (6)0.0006 (4)0.0091 (5)0.0008 (4)
C150.0356 (6)0.0450 (7)0.0443 (7)−0.0028 (5)0.0046 (5)0.0046 (6)
C160.0303 (6)0.0584 (9)0.0685 (10)−0.0043 (6)0.0056 (6)0.0149 (7)
C170.0423 (8)0.0624 (10)0.0686 (10)0.0073 (7)0.0261 (7)0.0195 (8)
C180.0588 (9)0.0532 (9)0.0451 (7)0.0056 (7)0.0227 (7)0.0028 (6)
C190.0437 (7)0.0433 (7)0.0388 (6)−0.0024 (5)0.0104 (5)−0.0027 (5)
N10.0294 (5)0.0295 (5)0.0353 (5)−0.0005 (4)0.0041 (4)0.0020 (4)
O10.0472 (5)0.0474 (6)0.0510 (6)0.0082 (4)0.0157 (4)−0.0071 (4)
O20.0474 (5)0.0311 (5)0.0601 (6)−0.0014 (4)0.0060 (4)−0.0032 (4)
F10.0865 (8)0.0996 (9)0.0501 (6)0.0098 (7)0.0145 (5)−0.0162 (6)
F20.0411 (5)0.1322 (12)0.0927 (8)−0.0331 (6)−0.0035 (5)0.0304 (8)
Cl10.0550 (2)0.0405 (2)0.0879 (3)0.01621 (16)0.0017 (2)0.00367 (18)
C1—N11.4827 (15)C8—C91.3948 (19)
C1—C81.5251 (17)C9—C101.370 (2)
C1—C21.5279 (18)C9—H90.9300
C1—H10.9800C10—F11.3590 (19)
C2—C31.4963 (19)C10—C111.373 (2)
C2—H2A0.9700C11—C121.373 (3)
C2—H2B0.9700C11—H110.9300
C3—O11.2099 (16)C12—C131.386 (2)
C3—C41.5056 (17)C12—H120.9300
C4—C51.5379 (17)C13—H130.9300
C4—H4A0.9700C14—C191.3857 (18)
C4—H4B0.9700C14—C151.3861 (18)
C5—N11.4781 (15)C15—C161.380 (2)
C5—C141.5246 (16)C15—H150.9300
C5—H50.9800C16—F21.3542 (18)
C6—O21.2154 (16)C16—C171.361 (2)
C6—N11.3691 (15)C17—C181.376 (2)
C6—C71.5187 (18)C17—H170.9300
C7—Cl11.7609 (14)C18—C191.387 (2)
C7—H7A0.9700C18—H180.9300
C7—H7B0.9700C19—H190.9300
C8—C131.3883 (19)
N1—C1—C8111.69 (10)C9—C8—C1118.56 (12)
N1—C1—C2109.49 (10)C10—C9—C8119.11 (14)
C8—C1—C2115.56 (11)C10—C9—H9120.4
N1—C1—H1106.5C8—C9—H9120.4
C8—C1—H1106.5F1—C10—C9118.32 (15)
C2—C1—H1106.5F1—C10—C11118.48 (14)
C3—C2—C1112.34 (10)C9—C10—C11123.19 (15)
C3—C2—H2A109.1C12—C11—C10117.56 (14)
C1—C2—H2A109.1C12—C11—H11121.2
C3—C2—H2B109.1C10—C11—H11121.2
C1—C2—H2B109.1C11—C12—C13121.06 (15)
H2A—C2—H2B107.9C11—C12—H12119.5
O1—C3—C2123.62 (12)C13—C12—H12119.5
O1—C3—C4122.01 (12)C12—C13—C8120.59 (15)
C2—C3—C4114.36 (10)C12—C13—H13119.7
C3—C4—C5114.73 (10)C8—C13—H13119.7
C3—C4—H4A108.6C19—C14—C15119.59 (12)
C5—C4—H4A108.6C19—C14—C5120.83 (11)
C3—C4—H4B108.6C15—C14—C5119.36 (11)
C5—C4—H4B108.6C16—C15—C14118.16 (13)
H4A—C4—H4B107.6C16—C15—H15120.9
N1—C5—C14113.88 (9)C14—C15—H15120.9
N1—C5—C4110.83 (10)F2—C16—C17118.22 (14)
C14—C5—C4106.77 (9)F2—C16—C15118.41 (15)
N1—C5—H5108.4C17—C16—C15123.37 (14)
C14—C5—H5108.4C16—C17—C18118.13 (13)
C4—C5—H5108.4C16—C17—H17120.9
O2—C6—N1122.39 (11)C18—C17—H17120.9
O2—C6—C7121.65 (11)C17—C18—C19120.47 (14)
N1—C6—C7115.96 (11)C17—C18—H18119.8
C6—C7—Cl1111.56 (10)C19—C18—H18119.8
C6—C7—H7A109.3C14—C19—C18120.29 (14)
Cl1—C7—H7A109.3C14—C19—H19119.9
C6—C7—H7B109.3C18—C19—H19119.9
Cl1—C7—H7B109.3C6—N1—C5122.80 (10)
H7A—C7—H7B108.0C6—N1—C1115.82 (10)
C13—C8—C9118.47 (13)C5—N1—C1118.67 (9)
C13—C8—C1122.89 (12)
N1—C1—C2—C359.23 (13)C4—C5—C14—C19−75.31 (14)
C8—C1—C2—C3−67.92 (14)N1—C5—C14—C15−138.10 (12)
C1—C2—C3—O1156.26 (12)C4—C5—C14—C1599.24 (13)
C1—C2—C3—C4−23.06 (15)C19—C14—C15—C160.6 (2)
O1—C3—C4—C5149.28 (12)C5—C14—C15—C16−173.98 (13)
C2—C3—C4—C5−31.38 (15)C14—C15—C16—F2179.52 (14)
C3—C4—C5—N150.02 (14)C14—C15—C16—C17−0.2 (2)
C3—C4—C5—C14174.56 (10)F2—C16—C17—C18179.94 (16)
O2—C6—C7—Cl10.30 (17)C15—C16—C17—C18−0.4 (3)
N1—C6—C7—Cl1−179.00 (9)C16—C17—C18—C190.4 (2)
N1—C1—C8—C13−134.11 (13)C15—C14—C19—C18−0.6 (2)
C2—C1—C8—C13−8.06 (18)C5—C14—C19—C18173.95 (13)
N1—C1—C8—C949.02 (15)C17—C18—C19—C140.0 (2)
C2—C1—C8—C9175.06 (11)O2—C6—N1—C5171.94 (12)
C13—C8—C9—C101.0 (2)C7—C6—N1—C5−8.77 (16)
C1—C8—C9—C10178.01 (12)O2—C6—N1—C110.87 (17)
C8—C9—C10—F1−178.72 (13)C7—C6—N1—C1−169.84 (11)
C8—C9—C10—C110.3 (2)C14—C5—N1—C666.79 (14)
F1—C10—C11—C12177.74 (15)C4—C5—N1—C6−172.80 (10)
C9—C10—C11—C12−1.2 (2)C14—C5—N1—C1−132.65 (11)
C10—C11—C12—C131.0 (3)C4—C5—N1—C1−12.24 (14)
C11—C12—C13—C80.3 (3)C8—C1—N1—C6−109.19 (12)
C9—C8—C13—C12−1.3 (2)C2—C1—N1—C6121.50 (11)
C1—C8—C13—C12−178.13 (13)C8—C1—N1—C588.92 (13)
N1—C5—C14—C1947.35 (16)C2—C1—N1—C5−40.39 (14)
D—H···AD—HH···AD···AD—H···A
C2—H2B···O1i0.972.603.415 (2)142
C7—H7A···F2ii0.972.493.270 (2)137
C18—H18···O2iii0.932.553.308 (2)139
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2B⋯O1i0.972.603.415 (2)142
C7—H7A⋯F2ii0.972.493.270 (2)137
C18—H18⋯O2iii0.932.553.308 (2)139

Symmetry codes: (i) ; (ii) ; (iii) .

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