Literature DB >> 21583659

4-{[(5-Methyl-2-fur-yl)methyl-ene]hydrazinocarbon-yl}pyridinium chloride monohydrate.

Li-Min Li, Fang-Fang Jian, Li Liu.   

Abstract

The title compound, C(12)H(12)N(3)O(2) (+)·Cl(-)·H(2)O, was prepared by the reaction of N'-[(5-methyl-2-fur-yl)methyl-ene]isonicotino-hydrazide and hydro-chloric acid at room temperature. The entire molecule is approximately planar with a maximum deviation of 0.047 (2) Å. An intramolecular C-H⋯O interaction is observed. O-H⋯Cl, N-H⋯Cl, N-H⋯O, N-H⋯N, C-H⋯Cl and C-H⋯O hydrogen-bonds stabilize the crystal structure.

Entities:  

Year:  2009        PMID: 21583659      PMCID: PMC2977373          DOI: 10.1107/S1600536809028426

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Schiff bases have been used extensively as ligands in the field of coordination chemistry, see: Cui et al. (2005 ▶). For their anti­microbial and anti­cancer applications, see: Tarafder et al. (2000 ▶) and Deschamps et al. (2003 ▶), respectively.

Experimental

Crystal data

C12H12N3O2 +·Cl−·H2O M = 283.71 Monoclinic, a = 8.5258 (17) Å b = 14.435 (3) Å c = 13.625 (4) Å β = 123.55 (2)° V = 1397.5 (7) Å3 Z = 4 Mo Kα radiation μ = 0.28 mm−1 T = 293 K 0.20 × 0.15 × 0.11 mm

Data collection

Bruker P4 diffractometer Absorption correction: none 13328 measured reflections 3187 independent reflections 2715 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.107 S = 1.07 3187 reflections 180 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.27 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809028426/at2845sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809028426/at2845Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H12N3O2+·Cl·H2OF(000) = 592
Mr = 283.71Dx = 1.348 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2715 reflections
a = 8.5258 (17) Åθ = 3.1–27.5°
b = 14.435 (3) ŵ = 0.28 mm1
c = 13.625 (4) ÅT = 293 K
β = 123.55 (2)°Bar, yellow
V = 1397.5 (7) Å30.20 × 0.15 × 0.11 mm
Z = 4
Bruker P4 diffractometer2715 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.026
graphiteθmax = 27.5°, θmin = 3.1°
Detector resolution: 3 pixels mm-1h = −10→11
ω scansk = −18→18
13328 measured reflectionsl = −17→17
3187 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.107H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0543P)2 + 0.3029P] where P = (Fo2 + 2Fc2)/3
3187 reflections(Δ/σ)max < 0.001
180 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.22892 (6)−0.42533 (3)−0.18006 (4)0.06023 (16)
O10.51022 (13)0.04123 (6)0.13453 (8)0.0380 (2)
O20.05971 (14)−0.22008 (7)−0.02944 (10)0.0536 (3)
N10.16922 (14)−0.04732 (7)−0.03026 (9)0.0327 (2)
N2−0.00554 (14)−0.08118 (7)−0.11953 (9)0.0327 (2)
H2A−0.0844−0.0467−0.17780.039*
N3−0.57485 (15)−0.28167 (8)−0.36865 (9)0.0392 (3)
H3A−0.6822−0.3057−0.41980.047*
C10.8247 (2)0.07121 (14)0.30399 (16)0.0616 (5)
H1B0.91410.12090.33970.092*
H1C0.87790.02150.28470.092*
H1D0.79410.04930.35800.092*
C20.65193 (19)0.10503 (11)0.19547 (13)0.0419 (3)
C30.5985 (2)0.18739 (10)0.14057 (14)0.0469 (4)
H3B0.66950.24150.16410.056*
C40.4137 (2)0.17617 (10)0.04032 (13)0.0441 (3)
H4A0.33950.2216−0.01450.053*
C50.36538 (19)0.08648 (9)0.03927 (12)0.0354 (3)
C60.19437 (19)0.03842 (9)−0.04240 (11)0.0359 (3)
H6A0.09780.0707−0.10670.043*
C7−0.04668 (16)−0.16914 (9)−0.11160 (10)0.0321 (3)
C8−0.23608 (16)−0.20547 (8)−0.20798 (10)0.0301 (3)
C9−0.37266 (17)−0.15335 (9)−0.30253 (11)0.0365 (3)
H9A−0.3495−0.0920−0.31150.044*
C10−0.54274 (18)−0.19394 (10)−0.38265 (11)0.0404 (3)
H10A−0.6356−0.1601−0.44680.049*
C11−0.4484 (2)−0.33342 (10)−0.27924 (13)0.0441 (3)
H11A−0.4768−0.3942−0.27210.053*
C12−0.27438 (19)−0.29683 (9)−0.19686 (12)0.0413 (3)
H12A−0.1837−0.3330−0.13460.050*
O1W−0.3179 (3)−0.06393 (18)−0.5308 (2)0.1060 (7)
H2W1−0.282 (4)−0.0189 (19)−0.481 (2)0.093 (8)*
H1W1−0.419 (4)−0.0676 (18)−0.566 (2)0.084 (9)*
U11U22U33U12U13U23
Cl10.0599 (3)0.0341 (2)0.0513 (2)−0.00819 (16)0.00847 (19)−0.00564 (15)
O10.0337 (5)0.0317 (5)0.0423 (5)−0.0068 (4)0.0170 (4)−0.0055 (4)
O20.0291 (5)0.0402 (5)0.0497 (6)−0.0051 (4)−0.0044 (4)0.0125 (5)
N10.0253 (5)0.0331 (5)0.0312 (5)−0.0053 (4)0.0104 (4)−0.0060 (4)
N20.0240 (5)0.0305 (5)0.0292 (5)−0.0022 (4)0.0056 (4)−0.0012 (4)
N30.0252 (5)0.0466 (7)0.0317 (5)−0.0085 (5)0.0070 (4)−0.0110 (5)
C10.0368 (8)0.0758 (12)0.0565 (10)−0.0073 (8)0.0159 (7)−0.0122 (9)
C20.0348 (6)0.0454 (7)0.0472 (8)−0.0143 (6)0.0236 (6)−0.0167 (6)
C30.0515 (8)0.0396 (7)0.0572 (9)−0.0204 (7)0.0348 (7)−0.0155 (7)
C40.0531 (8)0.0334 (7)0.0484 (8)−0.0089 (6)0.0297 (7)−0.0025 (6)
C50.0377 (7)0.0321 (6)0.0359 (6)−0.0053 (5)0.0200 (6)−0.0047 (5)
C60.0348 (6)0.0332 (6)0.0335 (6)−0.0030 (5)0.0151 (5)−0.0032 (5)
C70.0221 (5)0.0321 (6)0.0305 (6)−0.0002 (5)0.0072 (5)−0.0007 (5)
C80.0217 (5)0.0319 (6)0.0282 (5)−0.0003 (5)0.0084 (5)−0.0021 (5)
C90.0278 (6)0.0365 (6)0.0326 (6)−0.0007 (5)0.0089 (5)0.0038 (5)
C100.0262 (6)0.0476 (8)0.0302 (6)0.0008 (6)0.0047 (5)0.0022 (5)
C110.0386 (7)0.0333 (7)0.0435 (7)−0.0094 (6)0.0120 (6)−0.0066 (6)
C120.0319 (6)0.0307 (6)0.0384 (7)−0.0011 (5)0.0050 (5)0.0010 (5)
O1W0.0743 (12)0.152 (2)0.0905 (13)−0.0102 (12)0.0446 (11)−0.0516 (13)
O1—C51.3655 (17)C3—H3B0.9300
O1—C21.3742 (16)C4—C51.3566 (19)
O2—C71.2225 (16)C4—H4A0.9300
N1—C61.2823 (17)C5—C61.4324 (18)
N1—N21.3911 (14)C6—H6A0.9300
N2—C71.3375 (16)C7—C81.5044 (16)
N2—H2A0.8600C8—C121.3868 (18)
N3—C111.3239 (18)C8—C91.3869 (17)
N3—C101.3314 (19)C9—C101.3741 (18)
N3—H3A0.8600C9—H9A0.9300
C1—C21.479 (2)C10—H10A0.9300
C1—H1B0.9600C11—C121.3780 (18)
C1—H1C0.9600C11—H11A0.9300
C1—H1D0.9600C12—H12A0.9300
C2—C31.343 (2)O1W—H2W10.87 (3)
C3—C41.412 (2)O1W—H1W10.72 (3)
C5—O1—C2106.56 (11)C4—C5—C6130.05 (13)
C6—N1—N2113.64 (11)O1—C5—C6120.28 (11)
C7—N2—N1117.70 (10)N1—C6—C5122.56 (12)
C7—N2—H2A121.1N1—C6—H6A118.7
N1—N2—H2A121.1C5—C6—H6A118.7
C11—N3—C10122.76 (11)O2—C7—N2123.37 (11)
C11—N3—H3A118.6O2—C7—C8119.01 (11)
C10—N3—H3A118.6N2—C7—C8117.61 (10)
C2—C1—H1B109.5C12—C8—C9119.33 (11)
C2—C1—H1C109.5C12—C8—C7116.11 (11)
H1B—C1—H1C109.5C9—C8—C7124.53 (11)
C2—C1—H1D109.5C10—C9—C8118.83 (13)
H1B—C1—H1D109.5C10—C9—H9A120.6
H1C—C1—H1D109.5C8—C9—H9A120.6
C3—C2—O1110.02 (13)N3—C10—C9120.13 (12)
C3—C2—C1133.87 (14)N3—C10—H10A119.9
O1—C2—C1116.11 (14)C9—C10—H10A119.9
C2—C3—C4106.92 (13)N3—C11—C12119.73 (13)
C2—C3—H3B126.5N3—C11—H11A120.1
C4—C3—H3B126.5C12—C11—H11A120.1
C5—C4—C3106.83 (14)C11—C12—C8119.21 (12)
C5—C4—H4A126.6C11—C12—H12A120.4
C3—C4—H4A126.6C8—C12—H12A120.4
C4—C5—O1109.67 (12)H2W1—O1W—H1W1111 (3)
D—H···AD—HH···AD···AD—H···A
O1W—H2W1···Cl1i0.86 (3)2.40 (3)3.229 (3)162 (3)
O1W—H1W1···Cl1ii0.72 (3)2.51 (3)3.225 (3)177 (2)
N2—H2A···Cl1i0.862.393.2243 (15)164
N3—H3A···O2ii0.861.892.639 (2)144
N3—H3A···N1ii0.862.503.2238 (18)142
C3—H3B···Cl1iii0.932.763.6574 (19)162
C6—H6A···Cl1i0.932.693.5374 (18)151
C9—H9A···Cl1i0.932.643.5656 (18)171
C11—H11A···O1ii0.932.453.1694 (19)135
C12—H12A···O20.932.392.713 (2)100
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H2W1⋯Cl1i0.86 (3)2.40 (3)3.229 (3)162 (3)
O1W—H1W1⋯Cl1ii0.72 (3)2.51 (3)3.225 (3)177 (2)
N2—H2A⋯Cl1i0.862.393.2243 (15)164
N3—H3A⋯O2ii0.861.892.639 (2)144
N3—H3A⋯N1ii0.862.503.2238 (18)142
C3—H3B⋯Cl1iii0.932.763.6574 (19)162
C6—H6A⋯Cl1i0.932.693.5374 (18)151
C9—H9A⋯Cl1i0.932.643.5656 (18)171
C11—H11A⋯O1ii0.932.453.1694 (19)135
C12—H12A⋯O20.932.392.713 (2)100

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  The crystal structure of a novel copper(II) complex with asymmetric ligand derived from l-histidine.

Authors:  Patrick Deschamps; Prasad P Kulkarni; Bibudhendra Sarkar
Journal:  Inorg Chem       Date:  2003-11-17       Impact factor: 5.165

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.