Literature DB >> 21583644

5-Bromo-N-phenyl-pyrazine-2,3-diamine.

Xiaohui Zhu1.   

Abstract

In the title compound, C(10)H(9)BrN(4), the dihedral angle between the benzene and pyrazine rings is 61.34 (5)°. Inter-molecular N-H⋯N hydrogen bonds and N-H⋯π inter-actions assemble the mol-ecules into a three-dimensional network structure.

Entities:  

Year:  2009        PMID: 21583644      PMCID: PMC2977195          DOI: 10.1107/S1600536809028554

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For Cu or Pd catalysed C–N cross-coupling reactions, see: Fors et al. (2009 ▶); Liu et al. (2007 ▶).

Experimental

Crystal data

C10H9BrN4 M = 265.12 Monoclinic, a = 7.4834 (8) Å b = 15.4038 (17) Å c = 9.2079 (10) Å β = 91.307 (2)° V = 1061.1 (2) Å3 Z = 4 Mo Kα radiation μ = 3.85 mm−1 T = 293 K 0.15 × 0.12 × 0.10 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.596, T max = 0.700 5494 measured reflections 1871 independent reflections 1555 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.059 S = 1.00 1871 reflections 140 parameters H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.33 e Å−3 Data collection: SMART (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809028554/gk2218sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809028554/gk2218Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H9BrN4F(000) = 528
Mr = 265.12Dx = 1.660 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2474 reflections
a = 7.4834 (8) Åθ = 2.6–27.6°
b = 15.4038 (17) ŵ = 3.85 mm1
c = 9.2079 (10) ÅT = 293 K
β = 91.307 (2)°Block, colorless
V = 1061.1 (2) Å30.15 × 0.12 × 0.10 mm
Z = 4
Bruker SMART APEX diffractometer1871 independent reflections
Radiation source: fine-focus sealed tube1555 reflections with I > 2σ(I)
graphiteRint = 0.022
φ and ω scansθmax = 25.0°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −8→8
Tmin = 0.596, Tmax = 0.700k = −17→18
5494 measured reflectionsl = −10→10
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.025H-atom parameters constrained
wR(F2) = 0.059w = 1/[σ2(Fo2) + (0.025P)2 + 0.6504P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max = 0.002
1871 reflectionsΔρmax = 0.33 e Å3
140 parametersΔρmin = −0.33 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0241 (11)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br1−0.05901 (4)0.351301 (18)1.09071 (3)0.05020 (14)
N10.1466 (3)0.39455 (14)0.4791 (2)0.0455 (5)
H1A0.10000.43880.43340.046 (8)*
H1B0.24000.36760.44720.075 (11)*
N2−0.0254 (3)0.43567 (13)0.6710 (2)0.0404 (5)
N30.1484 (2)0.31467 (12)0.84959 (19)0.0319 (4)
N40.3193 (3)0.27272 (13)0.6497 (2)0.0420 (5)
H40.29800.25950.55910.063 (9)*
C10.1017 (3)0.38587 (14)0.6195 (2)0.0317 (5)
C20.1899 (3)0.32331 (14)0.7117 (2)0.0302 (5)
C30.0152 (3)0.36556 (15)0.8955 (2)0.0343 (5)
C4−0.0699 (3)0.42447 (16)0.8104 (3)0.0423 (6)
H4A−0.16080.45790.84880.051*
C50.4259 (3)0.21097 (15)0.7267 (2)0.0365 (6)
C60.4269 (4)0.12553 (16)0.6809 (3)0.0446 (6)
H60.35650.10840.60140.054*
C70.5329 (4)0.06590 (19)0.7538 (3)0.0564 (8)
H70.53380.00840.72290.068*
C80.6367 (4)0.0902 (2)0.8710 (3)0.0613 (8)
H80.70560.04910.92090.074*
C90.6390 (4)0.1748 (2)0.9145 (3)0.0589 (8)
H90.71080.19160.99340.071*
C100.5348 (3)0.23602 (18)0.8419 (3)0.0468 (6)
H100.53830.29380.87090.056*
U11U22U33U12U13U23
Br10.0541 (2)0.0615 (2)0.03565 (17)0.00683 (14)0.01461 (11)0.00123 (12)
N10.0648 (15)0.0406 (12)0.0314 (11)0.0182 (11)0.0047 (10)0.0082 (9)
N20.0466 (13)0.0353 (11)0.0392 (12)0.0102 (9)0.0014 (9)0.0047 (9)
N30.0345 (11)0.0327 (10)0.0288 (10)0.0035 (8)0.0036 (8)0.0018 (8)
N40.0504 (13)0.0451 (12)0.0310 (11)0.0194 (10)0.0094 (9)0.0070 (9)
C10.0369 (13)0.0262 (11)0.0320 (12)0.0014 (10)−0.0003 (10)−0.0008 (9)
C20.0330 (13)0.0265 (11)0.0312 (12)0.0008 (9)0.0013 (10)0.0001 (9)
C30.0375 (13)0.0359 (13)0.0297 (12)−0.0004 (10)0.0048 (10)−0.0004 (10)
C40.0433 (15)0.0400 (14)0.0440 (15)0.0124 (11)0.0085 (11)0.0005 (11)
C50.0339 (13)0.0404 (14)0.0356 (12)0.0084 (10)0.0107 (10)0.0087 (11)
C60.0408 (15)0.0416 (15)0.0516 (16)0.0068 (11)0.0040 (12)0.0028 (12)
C70.0502 (17)0.0404 (15)0.079 (2)0.0149 (13)0.0099 (15)0.0084 (14)
C80.0492 (18)0.069 (2)0.066 (2)0.0229 (15)0.0049 (15)0.0211 (16)
C90.0419 (16)0.084 (2)0.0504 (17)0.0121 (15)−0.0041 (13)0.0015 (15)
C100.0438 (15)0.0478 (15)0.0489 (15)0.0067 (12)0.0064 (12)−0.0016 (13)
Br1—C31.906 (2)C4—H4A0.9300
N1—C11.349 (3)C5—C101.378 (4)
N1—H1A0.8699C5—C61.382 (3)
N1—H1B0.8700C6—C71.378 (4)
N2—C11.319 (3)C6—H60.9300
N2—C41.344 (3)C7—C81.368 (4)
N3—C21.320 (3)C7—H70.9300
N3—C31.344 (3)C8—C91.364 (4)
N4—C21.377 (3)C8—H80.9300
N4—C51.420 (3)C9—C101.385 (4)
N4—H40.8700C9—H90.9300
C1—C21.436 (3)C10—H100.9300
C3—C41.349 (3)
C1—N1—H1A115.8C3—C4—H4A119.4
C1—N1—H1B119.8C10—C5—C6119.6 (2)
H1A—N1—H1B121.8C10—C5—N4120.8 (2)
C1—N2—C4117.7 (2)C6—C5—N4119.5 (2)
C2—N3—C3115.85 (19)C7—C6—C5119.5 (3)
C2—N4—C5124.36 (19)C7—C6—H6120.2
C2—N4—H4114.5C5—C6—H6120.2
C5—N4—H4114.3C8—C7—C6120.8 (3)
N2—C1—N1119.0 (2)C8—C7—H7119.6
N2—C1—C2120.2 (2)C6—C7—H7119.6
N1—C1—C2120.8 (2)C9—C8—C7119.7 (3)
N3—C2—N4121.6 (2)C9—C8—H8120.1
N3—C2—C1121.5 (2)C7—C8—H8120.1
N4—C2—C1116.92 (19)C8—C9—C10120.4 (3)
N3—C3—C4123.6 (2)C8—C9—H9119.8
N3—C3—Br1117.62 (16)C10—C9—H9119.8
C4—C3—Br1118.81 (18)C5—C10—C9119.8 (3)
N2—C4—C3121.2 (2)C5—C10—H10120.1
N2—C4—H4A119.4C9—C10—H10120.1
C4—N2—C1—N1178.7 (2)N3—C3—C4—N20.3 (4)
C4—N2—C1—C2−1.1 (3)Br1—C3—C4—N2−178.49 (19)
C3—N3—C2—N4−177.5 (2)C2—N4—C5—C10−59.7 (3)
C3—N3—C2—C12.3 (3)C2—N4—C5—C6123.5 (3)
C5—N4—C2—N3−3.5 (4)C10—C5—C6—C71.9 (4)
C5—N4—C2—C1176.6 (2)N4—C5—C6—C7178.8 (2)
N2—C1—C2—N3−0.9 (3)C5—C6—C7—C80.1 (4)
N1—C1—C2—N3179.4 (2)C6—C7—C8—C9−1.6 (5)
N2—C1—C2—N4179.0 (2)C7—C8—C9—C100.9 (5)
N1—C1—C2—N4−0.8 (3)C6—C5—C10—C9−2.6 (4)
C2—N3—C3—C4−2.1 (3)N4—C5—C10—C9−179.4 (2)
C2—N3—C3—Br1176.66 (16)C8—C9—C10—C51.2 (4)
C1—N2—C4—C31.3 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1B···Cg1i0.862.633.436 (3)157
N1—H1A···N2ii0.862.223.084 (3)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1BCg1i0.862.633.436 (3)157
N1—H1A⋯N2ii0.862.223.084 (3)169

Symmetry codes: (i) ; (ii) . Cg1 is the centroid of the C5–C10 ring.

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  An efficient process for pd-catalyzed C-N cross-coupling reactions of aryl iodides: insight into controlling factors.

Authors:  Brett P Fors; Nicole R Davis; Stephen L Buchwald
Journal:  J Am Chem Soc       Date:  2009-04-29       Impact factor: 15.419

  2 in total

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