Literature DB >> 21583643

(S)-6-{[(S)-2,2-Dimethyl-1,3-dioxolan-4-yl]meth-yl}-5,5-difluoro-5,6-dihydro-2H-pyran-2-one.

Zengsheng Yin, Xiangjun Deng, Rongxing Yao, Hongqi Li, Pinqiao Zhao.   

Abstract

The title compound, C(11)H(14)F(2)O(4), is a γ,γ-gem-difluorinated α,β-unsaturated δ-lactone. The dioxolane five-membered ring and the lactone ring adopt half-chair conformations. There are two inter-molecular C-H⋯O inter-actions involving the carbonyl group as an acceptor which stabilize the crystal structure.

Entities:  

Year:  2009        PMID: 21583643      PMCID: PMC2977082          DOI: 10.1107/S1600536809028256

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related synthetic procedures, see: Borjesson & Welch (1992 ▶); Dardonville & Gilbert (2003 ▶); Gaunt et al. (2003 ▶); Saito et al. (1992 ▶); You et al. (2006 ▶).

Experimental

Crystal data

C11H14F2O4 M = 248.22 Orthorhombic, a = 5.8003 (8) Å b = 7.8135 (11) Å c = 25.977 (4) Å V = 1177.3 (3) Å3 Z = 4 Mo Kα radiation μ = 0.13 mm−1 T = 293 K 0.51 × 0.48 × 0.26 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.761, T max = 1.000 (expected range = 0.736–0.968) 6682 measured reflections 1455 independent reflections 1261 reflections with I > 2σ(I) R int = 0.131

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.134 S = 1.00 1455 reflections 173 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.25 e Å−3 Δρmin = −0.32 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809028256/gk2220sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809028256/gk2220Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H14F2O4Dx = 1.400 Mg m3
Mr = 248.22Melting point: 351 K
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2723 reflections
a = 5.8003 (8) Åθ = 2.7–27.7°
b = 7.8135 (11) ŵ = 0.13 mm1
c = 25.977 (4) ÅT = 293 K
V = 1177.3 (3) Å3Prismatic, colorless
Z = 40.51 × 0.48 × 0.26 mm
F(000) = 520
Bruker SMART APEX CCD area-detector diffractometer1455 independent reflections
Radiation source: fine-focus sealed tube1261 reflections with I > 2σ(I)
graphiteRint = 0.131
Detector resolution: 0 pixels mm-1θmax = 26.5°, θmin = 1.6°
φ and ω scansh = −7→7
Absorption correction: multi-scan (SADABS; Bruker, 2001)k = −9→9
Tmin = 0.761, Tmax = 1.000l = −22→32
6682 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.054H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.134w = 1/[σ2(Fo2) + (0.0757P)2 + 0.0067P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max = 0.001
1455 reflectionsΔρmax = 0.25 e Å3
173 parametersΔρmin = −0.32 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.024 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.3246 (5)0.3829 (4)1.04388 (8)0.0741 (7)
O20.3476 (3)0.4190 (2)0.96034 (7)0.0476 (5)
O30.3431 (4)0.1554 (3)0.85332 (9)0.0639 (7)
O40.1373 (4)0.1699 (3)0.78051 (8)0.0644 (6)
F10.5404 (4)0.7375 (2)0.92182 (8)0.0666 (6)
F20.8095 (3)0.5889 (3)0.88536 (7)0.0720 (6)
C10.4418 (5)0.4245 (4)1.00830 (11)0.0517 (7)
C20.6747 (6)0.4915 (4)1.01335 (13)0.0570 (8)
C30.7764 (5)0.5731 (4)0.97527 (13)0.0559 (8)
C50.6553 (4)0.5857 (4)0.92469 (11)0.0473 (6)
C60.4949 (4)0.4373 (3)0.91582 (10)0.0393 (6)
C70.3425 (5)0.4559 (3)0.86946 (11)0.0436 (6)
H7A0.43760.47610.83940.052*
H7B0.24330.55460.87410.052*
C80.1945 (5)0.2985 (4)0.86032 (11)0.0468 (6)
C90.0516 (6)0.3041 (4)0.81085 (13)0.0612 (8)
H9A−0.11070.28720.81830.073*
H9B0.07060.41310.79350.073*
C100.2494 (5)0.0526 (4)0.81349 (11)0.0529 (7)
C110.0790 (8)−0.0735 (4)0.83574 (15)0.0712 (9)
H11A0.0221−0.14640.80880.107*
H11B−0.0473−0.01240.85100.107*
H11C0.1539−0.14180.86150.107*
C120.4412 (7)−0.0334 (6)0.7860 (2)0.0917 (14)
H12A0.54560.05120.77280.137*
H12B0.3803−0.09980.75810.137*
H12C0.5218−0.10730.80940.137*
H20.758 (6)0.483 (5)1.0503 (15)0.070 (10)*
H30.936 (7)0.614 (5)0.9775 (14)0.070 (10)*
H60.588 (4)0.335 (3)0.9143 (11)0.038 (7)*
H80.084 (5)0.278 (3)0.8868 (12)0.039 (7)*
U11U22U33U12U13U23
O10.0934 (15)0.0921 (17)0.0369 (11)−0.0240 (15)0.0040 (11)0.0066 (13)
O20.0503 (9)0.0605 (11)0.0319 (9)−0.0088 (9)−0.0024 (7)0.0022 (9)
O30.0785 (13)0.0511 (11)0.0622 (14)0.0125 (11)−0.0381 (12)−0.0168 (12)
O40.0925 (15)0.0675 (13)0.0331 (10)0.0026 (13)−0.0193 (11)0.0025 (11)
F10.0884 (12)0.0420 (8)0.0694 (13)0.0005 (8)−0.0035 (10)−0.0024 (10)
F20.0613 (10)0.0915 (13)0.0633 (12)−0.0178 (10)0.0215 (9)−0.0051 (11)
C10.0662 (15)0.0513 (15)0.0377 (14)−0.0059 (14)−0.0075 (13)0.0004 (14)
C20.0676 (17)0.0553 (15)0.0481 (16)−0.0037 (15)−0.0169 (15)−0.0088 (15)
C30.0468 (14)0.0617 (17)0.0591 (18)−0.0077 (13)−0.0064 (13)−0.0158 (16)
C50.0487 (12)0.0468 (14)0.0465 (15)−0.0032 (12)0.0073 (12)−0.0055 (13)
C60.0424 (12)0.0418 (13)0.0336 (13)0.0014 (10)0.0024 (10)−0.0028 (12)
C70.0532 (13)0.0448 (13)0.0328 (12)0.0013 (11)−0.0011 (11)0.0044 (11)
C80.0569 (14)0.0484 (14)0.0352 (13)0.0006 (12)−0.0093 (13)0.0018 (13)
C90.0747 (17)0.0619 (18)0.0470 (17)0.0064 (15)−0.0250 (16)−0.0014 (16)
C100.0641 (15)0.0534 (16)0.0414 (15)0.0008 (13)−0.0142 (13)−0.0082 (14)
C110.096 (2)0.0593 (19)0.058 (2)−0.0092 (18)−0.0136 (18)−0.0016 (18)
C120.084 (2)0.094 (3)0.098 (3)0.008 (2)0.006 (2)−0.031 (3)
O1—C11.193 (4)C6—H60.96 (3)
O2—C11.361 (3)C7—C81.518 (4)
O2—C61.445 (3)C7—H7A0.9700
O3—C101.418 (3)C7—H7B0.9700
O3—C81.424 (4)C8—C91.530 (4)
O4—C91.402 (4)C8—H80.95 (3)
O4—C101.414 (4)C9—H9A0.9700
F1—C51.362 (3)C9—H9B0.9700
F2—C51.358 (3)C10—C121.482 (5)
C1—C21.455 (5)C10—C111.511 (5)
C2—C31.316 (5)C11—H11A0.9600
C2—H21.08 (4)C11—H11B0.9600
C3—C51.493 (4)C11—H11C0.9600
C3—H30.98 (4)C12—H12A0.9600
C5—C61.505 (3)C12—H12B0.9600
C6—C71.501 (4)C12—H12C0.9600
C1—O2—C6119.5 (2)O3—C8—C7108.3 (2)
C10—O3—C8107.82 (19)O3—C8—C9104.1 (2)
C9—O4—C10107.9 (2)C7—C8—C9114.5 (2)
O1—C1—O2118.2 (3)O3—C8—H8111.6 (17)
O1—C1—C2123.9 (3)C7—C8—H8113.8 (17)
O2—C1—C2117.8 (3)C9—C8—H8104.2 (17)
C3—C2—C1121.5 (3)O4—C9—C8105.0 (2)
C3—C2—H2120 (2)O4—C9—H9A110.7
C1—C2—H2118 (2)C8—C9—H9A110.7
C2—C3—C5118.9 (3)O4—C9—H9B110.7
C2—C3—H3122 (2)C8—C9—H9B110.7
C5—C3—H3118 (2)H9A—C9—H9B108.8
F2—C5—F1105.4 (2)O4—C10—O3104.5 (2)
F2—C5—C3110.7 (2)O4—C10—C12110.3 (3)
F1—C5—C3109.6 (3)O3—C10—C12108.7 (3)
F2—C5—C6107.8 (2)O4—C10—C11110.7 (3)
F1—C5—C6111.1 (2)O3—C10—C11109.9 (3)
C3—C5—C6112.0 (3)C12—C10—C11112.3 (3)
O2—C6—C7107.65 (18)C10—C11—H11A109.5
O2—C6—C5108.6 (2)C10—C11—H11B109.5
C7—C6—C5114.4 (2)H11A—C11—H11B109.5
O2—C6—H6106.4 (16)C10—C11—H11C109.5
C7—C6—H6112.1 (17)H11A—C11—H11C109.5
C5—C6—H6107.4 (16)H11B—C11—H11C109.5
C6—C7—C8112.3 (2)C10—C12—H12A109.5
C6—C7—H7A109.1C10—C12—H12B109.5
C8—C7—H7A109.1H12A—C12—H12B109.5
C6—C7—H7B109.1C10—C12—H12C109.5
C8—C7—H7B109.1H12A—C12—H12C109.5
H7A—C7—H7B107.9H12B—C12—H12C109.5
C6—O2—C1—O1−168.5 (3)O2—C6—C7—C8−62.7 (3)
C6—O2—C1—C215.5 (4)C5—C6—C7—C8176.5 (2)
O1—C1—C2—C3−163.5 (3)C10—O3—C8—C7−140.1 (2)
O2—C1—C2—C312.3 (5)C10—O3—C8—C9−17.9 (3)
C1—C2—C3—C5−4.4 (5)C6—C7—C8—O3−59.2 (3)
C2—C3—C5—F2−148.5 (3)C6—C7—C8—C9−174.8 (2)
C2—C3—C5—F195.6 (3)C10—O4—C9—C821.3 (3)
C2—C3—C5—C6−28.1 (4)O3—C8—C9—O4−2.0 (3)
C1—O2—C6—C7−170.7 (2)C7—C8—C9—O4116.0 (3)
C1—O2—C6—C5−46.3 (3)C9—O4—C10—O3−32.7 (3)
F2—C5—C6—O2173.1 (2)C9—O4—C10—C12−149.4 (3)
F1—C5—C6—O2−71.9 (3)C9—O4—C10—C1185.6 (3)
C3—C5—C6—O251.1 (3)C8—O3—C10—O431.3 (3)
F2—C5—C6—C7−66.6 (3)C8—O3—C10—C12149.1 (3)
F1—C5—C6—C748.3 (3)C8—O3—C10—C11−87.6 (3)
C3—C5—C6—C7171.3 (2)
D—H···AD—HH···AD···AD—H···A
C8—H8···O1i0.95 (3)2.66 (3)3.578 (4)161 (2)
C6—H6···O1ii0.96 (3)2.44 (3)3.318 (4)151 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C8—H8⋯O1i0.95 (3)2.66 (3)3.578 (4)161 (2)
C6—H6⋯O1ii0.96 (3)2.44 (3)3.318 (4)151 (2)

Symmetry codes: (i) ; (ii) .

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