Literature DB >> 21583638

(4S,5S)-2-(4-Chloro-phen-yl)-1,3-dioxolane-4,5-dicarboxamide.

De-Cai Wang1, Jing Bai, Wei Xu, Tao Gai, Hua-Quan Liu.   

Abstract

The title compound, C(11)H(11)ClN(2)O(4), is an important inter-mediate for the preparation of platinum anti-cancer drugs. The dioxolane ring adopts a twist conformation with an equatorially attached chloro-phenyl substituent. In the crystal structure, mol-ecules are linked into a two-dimensional network parallel to (001) by N-H⋯O and C-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21583638      PMCID: PMC2977328          DOI: 10.1107/S1600536809027494

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For general background to platinum anti­cancer drugs, see: Kim et al. (1994 ▶); Pandey et al. (1997 ▶).

Experimental

Crystal data

C11H11ClN2O4 M = 270.67 Monoclinic, a = 9.2780 (19) Å b = 4.7600 (10) Å c = 13.245 (3) Å β = 93.15 (3)° V = 584.1 (2) Å3 Z = 2 Mo Kα radiation μ = 0.34 mm−1 T = 293 K 0.20 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.936, T max = 0.967 2248 measured reflections 2113 independent reflections 1694 reflections with I > 2σ(I) R int = 0.027 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.122 S = 1.07 2113 reflections 179 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.27 e Å−3 Absolute structure: Flack (1983 ▶), 916 Friedel pairs Flack parameter: 0.07 (14) Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809027494/ci2828sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809027494/ci2828Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H11ClN2O4F(000) = 280
Mr = 270.67Dx = 1.539 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 25 reflections
a = 9.2780 (19) Åθ = 9–13°
b = 4.760 (1) ŵ = 0.34 mm1
c = 13.245 (3) ÅT = 293 K
β = 93.15 (3)°Block, colourless
V = 584.1 (2) Å30.20 × 0.20 × 0.10 mm
Z = 2
Enraf–Nonius CAD-4 diffractometer1694 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.027
graphiteθmax = 25.3°, θmin = 1.5°
ω/2θ scansh = 0→11
Absorption correction: ψ scan (North et al., 1968)k = −5→5
Tmin = 0.936, Tmax = 0.967l = −15→15
2248 measured reflections3 standard reflections every 200 reflections
2113 independent reflections intensity decay: 1%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.122w = 1/[σ2(Fo2) + (0.0601P)2 + 0.0558P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max = 0.001
2113 reflectionsΔρmax = 0.20 e Å3
179 parametersΔρmin = −0.26 e Å3
1 restraintAbsolute structure: Flack (1983), 916 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.07 (14)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.35368 (14)−0.0236 (4)−0.21514 (8)0.0925 (5)
O10.2854 (2)0.2859 (5)0.26692 (18)0.0475 (6)
O20.0917 (2)0.0071 (5)0.24181 (16)0.0461 (6)
O30.3515 (3)0.0218 (6)0.51614 (17)0.0568 (7)
O4−0.0323 (3)0.4727 (5)0.3827 (2)0.0657 (8)
N10.4522 (4)−0.0804 (9)0.3700 (3)0.0597 (10)
H1A0.516 (4)−0.168 (8)0.397 (3)0.038 (10)*
H1B0.451 (4)−0.069 (10)0.305 (3)0.064 (13)*
N2−0.1472 (4)0.0634 (7)0.3925 (3)0.0458 (7)
H2A−0.230 (4)0.139 (7)0.403 (2)0.034 (9)*
H2B−0.140 (5)−0.105 (12)0.399 (3)0.071 (15)*
C10.2948 (4)0.0470 (10)−0.0955 (3)0.0573 (10)
C20.3508 (5)−0.1037 (10)−0.0134 (3)0.0675 (12)
H20.4179−0.2455−0.02240.081*
C30.3072 (4)−0.0438 (10)0.0813 (3)0.0618 (10)
H30.3440−0.14760.13630.074*
C40.2085 (4)0.1701 (7)0.0964 (3)0.0467 (9)
C50.1527 (4)0.3126 (9)0.0133 (3)0.0614 (11)
H50.08520.45410.02160.074*
C60.1949 (5)0.2500 (11)−0.0830 (3)0.0701 (12)
H60.15490.3468−0.13870.084*
C70.1632 (4)0.2384 (7)0.1998 (3)0.0471 (8)
H70.10020.40380.19760.057*
C80.2436 (3)0.2201 (7)0.3666 (2)0.0392 (7)
H80.22640.39350.40390.047*
C90.1005 (3)0.0548 (7)0.3490 (2)0.0378 (7)
H90.1064−0.12480.38520.045*
C10−0.0327 (3)0.2166 (7)0.3777 (3)0.0395 (8)
C110.3560 (3)0.0449 (8)0.4236 (2)0.0423 (8)
U11U22U33U12U13U23
Cl10.1056 (9)0.1139 (10)0.0597 (6)−0.0231 (10)0.0197 (6)−0.0196 (7)
O10.0522 (13)0.0425 (14)0.0473 (13)−0.0157 (11)−0.0015 (11)0.0055 (11)
O20.0474 (12)0.0375 (13)0.0539 (13)−0.0122 (12)0.0066 (10)−0.0116 (12)
O30.0565 (14)0.0719 (19)0.0423 (13)−0.0098 (15)0.0051 (11)0.0030 (14)
O40.0582 (15)0.0206 (12)0.120 (2)0.0031 (12)0.0207 (14)−0.0055 (15)
N10.055 (2)0.074 (3)0.050 (2)0.0199 (19)−0.0040 (17)−0.0013 (18)
N20.0402 (17)0.0289 (17)0.069 (2)0.0016 (14)0.0126 (14)0.0046 (14)
C10.057 (2)0.064 (3)0.051 (2)−0.019 (2)0.0029 (17)−0.008 (2)
C20.071 (3)0.065 (3)0.066 (3)0.011 (2)−0.003 (2)−0.019 (2)
C30.078 (3)0.058 (2)0.048 (2)0.012 (2)−0.0093 (18)−0.003 (2)
C40.049 (2)0.0377 (19)0.053 (2)−0.0036 (16)−0.0039 (17)−0.0016 (16)
C50.057 (2)0.061 (3)0.066 (3)0.009 (2)0.0015 (19)0.012 (2)
C60.073 (3)0.082 (3)0.055 (2)−0.005 (3)−0.006 (2)0.016 (2)
C70.049 (2)0.0352 (18)0.057 (2)0.0005 (17)−0.0044 (17)0.0031 (16)
C80.0428 (18)0.0303 (17)0.0450 (18)−0.0061 (15)0.0073 (15)−0.0031 (14)
C90.0388 (16)0.0245 (15)0.0500 (19)−0.0048 (14)0.0021 (14)−0.0002 (13)
C100.0395 (17)0.0312 (19)0.0479 (19)−0.0016 (15)0.0023 (15)0.0005 (15)
C110.0343 (16)0.045 (2)0.0475 (19)−0.0100 (16)0.0032 (14)−0.0074 (17)
Cl1—C11.738 (4)C2—C31.370 (5)
O1—C71.420 (4)C2—H20.93
O1—C81.431 (4)C3—C41.391 (5)
O2—C71.415 (4)C3—H30.93
O2—C91.436 (4)C4—C51.370 (5)
O3—C111.233 (4)C4—C71.490 (5)
O4—C101.221 (4)C5—C61.387 (6)
N1—C111.313 (5)C5—H50.93
N1—H1A0.79 (4)C6—H60.93
N1—H1B0.86 (4)C7—H70.98
N2—C101.312 (5)C8—C111.506 (5)
N2—H2A0.86 (3)C8—C91.550 (4)
N2—H2B0.81 (6)C8—H80.98
C1—C61.355 (6)C9—C101.522 (4)
C1—C21.379 (6)C9—H90.98
C7—O1—C8107.2 (2)C5—C6—H6120.2
C7—O2—C9105.3 (2)O2—C7—O1104.7 (3)
C11—N1—H1A120 (3)O2—C7—C4110.7 (3)
C11—N1—H1B123 (3)O1—C7—C4110.8 (3)
H1A—N1—H1B117 (4)O2—C7—H7110.2
C10—N2—H2A122 (2)O1—C7—H7110.2
C10—N2—H2B121 (3)C4—C7—H7110.2
H2A—N2—H2B117 (4)O1—C8—C11111.6 (3)
C6—C1—C2120.4 (4)O1—C8—C9104.2 (2)
C6—C1—Cl1120.0 (3)C11—C8—C9111.0 (3)
C2—C1—Cl1119.6 (3)O1—C8—H8109.9
C3—C2—C1119.7 (4)C11—C8—H8109.9
C3—C2—H2120.1C9—C8—H8109.9
C1—C2—H2120.1O2—C9—C10108.9 (2)
C2—C3—C4121.0 (4)O2—C9—C8103.3 (2)
C2—C3—H3119.5C10—C9—C8114.0 (3)
C4—C3—H3119.5O2—C9—H9110.1
C5—C4—C3118.0 (4)C10—C9—H9110.1
C5—C4—C7121.2 (3)C8—C9—H9110.1
C3—C4—C7120.9 (3)O4—C10—N2123.2 (3)
C4—C5—C6121.3 (4)O4—C10—C9121.2 (3)
C4—C5—H5119.4N2—C10—C9115.5 (3)
C6—C5—H5119.4O3—C11—N1123.9 (3)
C1—C6—C5119.7 (4)O3—C11—C8119.2 (3)
C1—C6—H6120.2N1—C11—C8116.9 (3)
C6—C1—C2—C3−1.3 (6)C3—C4—C7—O152.9 (5)
Cl1—C1—C2—C3178.4 (3)C7—O1—C8—C11134.7 (3)
C1—C2—C3—C4−0.9 (7)C7—O1—C8—C914.8 (3)
C2—C3—C4—C52.1 (6)C7—O2—C9—C1091.5 (3)
C2—C3—C4—C7−178.9 (4)C7—O2—C9—C8−30.0 (3)
C3—C4—C5—C6−1.2 (6)O1—C8—C9—O29.3 (3)
C7—C4—C5—C6179.8 (4)C11—C8—C9—O2−111.0 (3)
C2—C1—C6—C52.2 (6)O1—C8—C9—C10−108.7 (3)
Cl1—C1—C6—C5−177.5 (3)C11—C8—C9—C10130.9 (3)
C4—C5—C6—C1−1.0 (7)O2—C9—C10—O4−93.1 (4)
C9—O2—C7—O140.4 (3)C8—C9—C10—O421.7 (5)
C9—O2—C7—C4159.7 (3)O2—C9—C10—N284.4 (4)
C8—O1—C7—O2−34.2 (3)C8—C9—C10—N2−160.8 (3)
C8—O1—C7—C4−153.5 (3)O1—C8—C11—O3164.5 (3)
C5—C4—C7—O2116.2 (4)C9—C8—C11—O3−79.7 (4)
C3—C4—C7—O2−62.8 (4)O1—C8—C11—N1−17.0 (4)
C5—C4—C7—O1−128.1 (4)C9—C8—C11—N198.8 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O3i0.79 (4)2.20 (4)2.979 (5)166 (4)
N2—H2A···O3ii0.87 (4)2.42 (3)3.173 (5)145 (3)
N2—H2B···O4iii0.81 (6)2.26 (6)3.012 (4)155 (4)
C9—H9···O4iii0.982.313.075 (4)135
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O3i0.79 (4)2.20 (4)2.979 (5)166 (4)
N2—H2A⋯O3ii0.87 (4)2.42 (3)3.173 (5)145 (3)
N2—H2B⋯O4iii0.81 (6)2.26 (6)3.012 (4)155 (4)
C9—H9⋯O4iii0.982.313.075 (4)135

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and antitumor activity of a series of [2-substituted-4,5-bis(aminomethyl)-1,3-dioxolane]platinum(II) complexes.

Authors:  D K Kim; G Kim; J Gam; Y B Cho; H T Kim; J H Tai; K H Kim; W S Hong; J G Park
Journal:  J Med Chem       Date:  1994-05-13       Impact factor: 7.446

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.