Literature DB >> 21583611

1-Ethyl-1H,6H-pyrrolo[2,3-c]azepine-4,8(5H,7H)-dione.

Dong Dong Li1, Gui Hong Tang, Xiang Chao Zeng, Xing Yan Xu, Gang Huang.   

Abstract

The title compound, C(10)H(12)N(2)O(2), was synthesized by cyclization of 3-(1-ethyl-pyrrole-2-carboxamido)propanoic acid in the presence of polyphospho-ric acid and diphospho-rus pentoxide. In the crystal structure, adjacent mol-ecules are linked by N-H⋯O hydrogen bonds, forming chains extending along the b axis.

Entities:  

Year:  2009        PMID: 21583611      PMCID: PMC2977308          DOI: 10.1107/S1600536809027378

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For pyrroles sourced from marine organisms, see: Liu et al. (2005 ▶). For the bioactivity of pyrrole derivatives, see: Banwell et al. (2006 ▶); Sosa et al. (2002 ▶). For related structures, see: Zeng (2006 ▶); Zeng et al. (2005 ▶).

Experimental

Crystal data

C10H12N2O2 M = 192.22 Monoclinic, a = 11.703 (2) Å b = 7.7863 (13) Å c = 11.0004 (19) Å β = 113.878 (3)° V = 916.6 (3) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 173 K 0.46 × 0.45 × 0.30 mm

Data collection

Bruker SMART 1K CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.956, T max = 0.971 4523 measured reflections 1984 independent reflections 1661 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.104 S = 1.07 1984 reflections 128 parameters H-atom parameters constrained Δρmax = 0.28 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker,1999 ▶); cell refinement: SAINT-Plus (Bruker, 1999 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809027378/jh2089sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809027378/jh2089Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H12N2O2Dx = 1.393 Mg m3
Mr = 192.22Melting point: 428 K
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 11.703 (2) ÅCell parameters from 2801 reflections
b = 7.7863 (13) Åθ = 3.2–27.0°
c = 11.0004 (19) ŵ = 0.10 mm1
β = 113.878 (3)°T = 173 K
V = 916.6 (3) Å3Block, colourless
Z = 40.46 × 0.45 × 0.30 mm
F(000) = 408
Bruker SMART 1K CCD area-detector diffractometer1984 independent reflections
Radiation source: fine-focus sealed tube1661 reflections with I > 2σ(I)
graphiteRint = 0.021
φ and ω scansθmax = 27.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −14→10
Tmin = 0.956, Tmax = 0.971k = −9→6
4523 measured reflectionsl = −11→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.104H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0534P)2 + 0.2795P] where P = (Fo2 + 2Fc2)/3
1984 reflections(Δ/σ)max = 0.001
128 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O20.07477 (9)0.05619 (12)0.30383 (10)0.0317 (3)
O10.47580 (8)0.04303 (12)0.16872 (9)0.0277 (2)
N20.35948 (10)0.26744 (13)0.18305 (11)0.0239 (3)
H2A0.42690.33220.21290.029*
N10.24341 (10)−0.13996 (13)0.02340 (10)0.0222 (3)
C50.37313 (11)0.10354 (16)0.15418 (12)0.0210 (3)
C10.14174 (12)−0.23379 (16)0.01642 (13)0.0255 (3)
H10.1100−0.3328−0.03720.031*
C40.25889 (11)−0.00413 (15)0.10751 (12)0.0201 (3)
C70.19395 (13)0.28160 (17)0.26984 (14)0.0276 (3)
H7A0.26340.28600.35910.033*
H7B0.12830.36130.27050.033*
C30.16546 (11)−0.01426 (15)0.15559 (12)0.0212 (3)
C80.14076 (11)0.10147 (16)0.24709 (12)0.0231 (3)
C20.09348 (12)−0.16271 (16)0.09844 (13)0.0247 (3)
H20.0246−0.20460.11440.030*
C90.31226 (13)−0.17678 (16)−0.05965 (13)0.0257 (3)
H9A0.3682−0.0790−0.05420.031*
H9B0.2521−0.1882−0.15340.031*
C100.38929 (13)−0.33927 (18)−0.01768 (14)0.0312 (3)
H10A0.4517−0.32650.07370.047*
H10B0.4315−0.3600−0.07710.047*
H10C0.3345−0.4365−0.02250.047*
C60.24223 (12)0.34703 (16)0.16897 (13)0.0243 (3)
H6A0.17850.32450.07830.029*
H6B0.25430.47290.17930.029*
U11U22U33U12U13U23
O20.0380 (6)0.0290 (5)0.0366 (5)0.0024 (4)0.0237 (5)0.0032 (4)
O10.0232 (5)0.0257 (5)0.0347 (5)0.0027 (4)0.0123 (4)0.0015 (4)
N20.0223 (5)0.0189 (5)0.0302 (6)−0.0029 (4)0.0102 (4)−0.0020 (4)
N10.0253 (5)0.0184 (5)0.0222 (5)0.0012 (4)0.0090 (4)−0.0004 (4)
C50.0232 (6)0.0204 (6)0.0199 (6)0.0015 (5)0.0091 (5)0.0027 (5)
C10.0263 (7)0.0192 (6)0.0271 (6)−0.0014 (5)0.0068 (5)−0.0011 (5)
C40.0237 (6)0.0163 (5)0.0191 (6)0.0025 (5)0.0075 (5)0.0017 (4)
C70.0320 (7)0.0230 (6)0.0315 (7)−0.0004 (5)0.0168 (6)−0.0045 (5)
C30.0215 (6)0.0188 (6)0.0217 (6)0.0026 (5)0.0072 (5)0.0033 (5)
C80.0231 (6)0.0231 (6)0.0224 (6)0.0043 (5)0.0086 (5)0.0034 (5)
C20.0228 (6)0.0210 (6)0.0287 (6)−0.0011 (5)0.0089 (5)0.0031 (5)
C90.0320 (7)0.0237 (6)0.0235 (6)0.0030 (5)0.0135 (5)−0.0007 (5)
C100.0341 (8)0.0283 (7)0.0308 (7)0.0077 (6)0.0128 (6)−0.0025 (6)
C60.0276 (7)0.0170 (6)0.0283 (6)0.0023 (5)0.0114 (5)−0.0002 (5)
O2—C81.2250 (15)C7—H7A0.9900
O1—C51.2393 (15)C7—H7B0.9900
N2—C51.3402 (16)C3—C21.4185 (17)
N2—C61.4556 (16)C3—C81.4643 (18)
N2—H2A0.8800C2—H20.9500
N1—C41.3681 (16)C9—C101.5131 (18)
N1—C11.3716 (16)C9—H9A0.9900
N1—C91.4704 (16)C9—H9B0.9900
C5—C41.4826 (17)C10—H10A0.9800
C1—C21.3609 (19)C10—H10B0.9800
C1—H10.9500C10—H10C0.9800
C4—C31.3964 (17)C6—H6A0.9900
C7—C81.5137 (18)C6—H6B0.9900
C7—C61.5223 (18)
C5—N2—C6125.30 (11)O2—C8—C3120.92 (12)
C5—N2—H2A117.4O2—C8—C7118.97 (11)
C6—N2—H2A117.4C3—C8—C7120.09 (11)
C4—N1—C1108.91 (10)C1—C2—C3107.09 (11)
C4—N1—C9127.96 (11)C1—C2—H2126.5
C1—N1—C9122.85 (11)C3—C2—H2126.5
O1—C5—N2122.26 (12)N1—C9—C10112.47 (11)
O1—C5—C4121.40 (11)N1—C9—H9A109.1
N2—C5—C4116.31 (11)C10—C9—H9A109.1
C2—C1—N1109.25 (11)N1—C9—H9B109.1
C2—C1—H1125.4C10—C9—H9B109.1
N1—C1—H1125.4H9A—C9—H9B107.8
N1—C4—C3107.63 (11)C9—C10—H10A109.5
N1—C4—C5121.69 (11)C9—C10—H10B109.5
C3—C4—C5129.45 (11)H10A—C10—H10B109.5
C8—C7—C6116.02 (11)C9—C10—H10C109.5
C8—C7—H7A108.3H10A—C10—H10C109.5
C6—C7—H7A108.3H10B—C10—H10C109.5
C8—C7—H7B108.3N2—C6—C7113.08 (11)
C6—C7—H7B108.3N2—C6—H6A109.0
H7A—C7—H7B107.4C7—C6—H6A109.0
C4—C3—C2107.08 (11)N2—C6—H6B109.0
C4—C3—C8128.93 (11)C7—C6—H6B109.0
C2—C3—C8123.99 (12)H6A—C6—H6B107.8
C6—N2—C5—O1−179.77 (11)C5—C4—C3—C813.5 (2)
C6—N2—C5—C4−1.61 (17)C4—C3—C8—O2−163.02 (12)
C4—N1—C1—C2−1.80 (14)C2—C3—C8—O217.16 (19)
C9—N1—C1—C2−176.11 (11)C4—C3—C8—C718.71 (19)
C1—N1—C4—C30.68 (13)C2—C3—C8—C7−161.10 (12)
C9—N1—C4—C3174.62 (11)C6—C7—C8—O2−162.98 (12)
C1—N1—C4—C5169.12 (11)C6—C7—C8—C315.32 (17)
C9—N1—C4—C5−16.93 (18)N1—C1—C2—C32.15 (14)
O1—C5—C4—N1−30.73 (17)C4—C3—C2—C1−1.71 (14)
N2—C5—C4—N1151.09 (11)C8—C3—C2—C1178.14 (11)
O1—C5—C4—C3134.95 (14)C4—N1—C9—C10114.79 (14)
N2—C5—C4—C3−43.23 (18)C1—N1—C9—C10−72.04 (15)
N1—C4—C3—C20.63 (13)C5—N2—C6—C769.94 (16)
C5—C4—C3—C2−166.62 (12)C8—C7—C6—N2−72.98 (15)
N1—C4—C3—C8−179.21 (11)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O1i0.882.122.9043 (14)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O1i0.882.122.9043 (14)148

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis of axinohydantoins.

Authors:  Ana Carolina Barrios Sosa; Kenichi Yakushijin; David A Horne
Journal:  J Org Chem       Date:  2002-06-28       Impact factor: 4.354

3.  4,5-Diaryl-1H-pyrrole-2-carboxylates as combretastatin A-4/lamellarin T hybrids: synthesis and evaluation as anti-mitotic and cytotoxic agents.

Authors:  Martin G Banwell; Ernest Hamel; David C R Hockless; Pascal Verdier-Pinard; Anthony C Willis; David J Wong
Journal:  Bioorg Med Chem       Date:  2006-02-28       Impact factor: 3.641

  3 in total

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