| Literature DB >> 21583609 |
You-Sheng Chen1, Kun Zhang, Su-Qing Zhao.
Abstract
In the cation of the title compound, C(7)H(7)N(4)O(2) (+)·Cl(-), the benzimidazole ring system is planar with a maximum deviation of -0.019 (3) Å. In the crystal structure, C-H⋯Cl, N-H⋯Cl, and N-H⋯Cl inter-actions link the mol-ecules into a two-dimensional network. π-π contacts between benzimidazole rings [centroid-centroid distances = 3.928 (1) and 3.587 (1) Å] may further stabilize the structure.Entities:
Year: 2009 PMID: 21583609 PMCID: PMC2977465 DOI: 10.1107/S1600536809027342
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C7H7N4O2+·Cl− | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 25 reflections |
| θ = 2.1–25.3° | |
| µ = 0.40 mm−1 | |
| β = 91.303 (3)° | Block, yellow |
| 0.12 × 0.12 × 0.10 mm | |
| Enraf–Nonius CAD-4 diffractometer | 1242 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 25.0°, θmin = 2.5° |
| ω/2θ scans | |
| Absorption correction: ψ scan (North | |
| 4345 measured reflections | 3 standard reflections every 120 min |
| 1580 independent reflections | intensity decay: none |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1580 reflections | (Δ/σ)max < 0.001 |
| 127 parameters | Δρmax = 0.18 e Å−3 |
| 0 restraints | Δρmin = −0.19 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.40318 (4) | 0.59647 (8) | 0.67245 (4) | 0.0535 (2) | |
| O1 | 0.38248 (13) | 0.6546 (3) | 0.39469 (12) | 0.0718 (6) | |
| O2 | 0.42766 (13) | 0.8483 (3) | 0.31128 (11) | 0.0743 (6) | |
| N1 | 0.61668 (12) | 0.7489 (2) | 0.63485 (10) | 0.0424 (5) | |
| H1A | 0.5835 | 0.6840 | 0.6656 | 0.051* | |
| N2 | 0.72946 (12) | 0.9189 (2) | 0.59344 (10) | 0.0403 (4) | |
| H2A | 0.7805 | 0.9804 | 0.5934 | 0.048* | |
| N3 | 0.73958 (14) | 0.8248 (3) | 0.72889 (12) | 0.0552 (6) | |
| H3A | 0.7916 | 0.8812 | 0.7380 | 0.066* | |
| H3B | 0.7150 | 0.7649 | 0.7669 | 0.066* | |
| N4 | 0.43847 (13) | 0.7660 (3) | 0.37360 (12) | 0.0491 (5) | |
| C1 | 0.69763 (15) | 0.8301 (3) | 0.65691 (13) | 0.0392 (5) | |
| C2 | 0.59515 (14) | 0.7865 (3) | 0.55416 (12) | 0.0363 (5) | |
| C3 | 0.66716 (14) | 0.8960 (3) | 0.52782 (13) | 0.0361 (5) | |
| C4 | 0.66616 (16) | 0.9615 (3) | 0.44987 (13) | 0.0420 (5) | |
| H4 | 0.7147 | 1.0332 | 0.4323 | 0.050* | |
| C5 | 0.59021 (16) | 0.9163 (3) | 0.39925 (13) | 0.0432 (5) | |
| H5 | 0.5859 | 0.9590 | 0.3466 | 0.052* | |
| C6 | 0.52047 (15) | 0.8067 (3) | 0.42752 (13) | 0.0392 (5) | |
| C7 | 0.52051 (15) | 0.7385 (3) | 0.50434 (13) | 0.0401 (5) | |
| H7 | 0.4728 | 0.6644 | 0.5213 | 0.048* |
| Cl1 | 0.0422 (4) | 0.0708 (4) | 0.0475 (4) | −0.0144 (3) | 0.0034 (3) | −0.0083 (3) |
| O1 | 0.0580 (12) | 0.0805 (13) | 0.0762 (13) | −0.0252 (10) | −0.0151 (10) | 0.0019 (11) |
| O2 | 0.0612 (12) | 0.1070 (16) | 0.0539 (12) | −0.0053 (11) | −0.0168 (9) | 0.0130 (11) |
| N1 | 0.0447 (11) | 0.0431 (11) | 0.0393 (11) | −0.0091 (9) | 0.0011 (8) | 0.0035 (8) |
| N2 | 0.0328 (10) | 0.0461 (11) | 0.0419 (10) | −0.0076 (8) | −0.0012 (8) | 0.0000 (8) |
| N3 | 0.0523 (13) | 0.0663 (14) | 0.0466 (12) | −0.0117 (10) | −0.0096 (10) | 0.0075 (10) |
| N4 | 0.0387 (11) | 0.0593 (13) | 0.0491 (12) | 0.0016 (10) | −0.0039 (9) | −0.0090 (10) |
| C1 | 0.0351 (11) | 0.0413 (12) | 0.0411 (13) | 0.0005 (9) | −0.0013 (9) | −0.0016 (10) |
| C2 | 0.0357 (11) | 0.0366 (11) | 0.0367 (12) | 0.0003 (9) | 0.0019 (9) | −0.0012 (9) |
| C3 | 0.0311 (11) | 0.0368 (11) | 0.0405 (12) | 0.0005 (9) | 0.0022 (9) | −0.0035 (9) |
| C4 | 0.0372 (12) | 0.0445 (13) | 0.0446 (13) | −0.0050 (10) | 0.0064 (10) | 0.0019 (10) |
| C5 | 0.0430 (13) | 0.0479 (13) | 0.0387 (12) | 0.0007 (10) | 0.0026 (10) | 0.0006 (10) |
| C6 | 0.0364 (12) | 0.0420 (12) | 0.0391 (12) | 0.0023 (9) | −0.0021 (9) | −0.0063 (10) |
| C7 | 0.0362 (12) | 0.0393 (12) | 0.0448 (13) | −0.0059 (9) | 0.0039 (10) | −0.0051 (10) |
| N1—H1A | 0.8600 | C2—C7 | 1.365 (3) |
| N2—H2A | 0.8600 | C3—N2 | 1.385 (3) |
| N3—H3A | 0.8600 | C3—C4 | 1.383 (3) |
| N3—H3B | 0.8600 | C4—C5 | 1.381 (3) |
| N4—O1 | 1.225 (3) | C4—H4 | 0.9300 |
| N4—O2 | 1.219 (2) | C5—C6 | 1.385 (3) |
| C1—N1 | 1.340 (3) | C5—H5 | 0.9300 |
| C1—N2 | 1.340 (3) | C6—C7 | 1.374 (3) |
| C1—N3 | 1.312 (3) | C6—N4 | 1.469 (3) |
| C2—N1 | 1.389 (3) | C7—H7 | 0.9300 |
| C2—C3 | 1.397 (3) | ||
| C1—N1—C2 | 108.84 (17) | C7—C2—C3 | 121.8 (2) |
| C1—N1—H1A | 125.6 | N2—C3—C2 | 106.28 (18) |
| C2—N1—H1A | 125.6 | C4—C3—N2 | 132.2 (2) |
| C1—N2—C3 | 109.26 (17) | C4—C3—C2 | 121.6 (2) |
| C1—N2—H2A | 125.4 | C3—C4—H4 | 121.4 |
| C3—N2—H2A | 125.4 | C5—C4—C3 | 117.3 (2) |
| C1—N3—H3A | 120.0 | C5—C4—H4 | 121.4 |
| C1—N3—H3B | 120.0 | C4—C5—C6 | 119.4 (2) |
| H3A—N3—H3B | 120.0 | C4—C5—H5 | 120.3 |
| O1—N4—C6 | 118.4 (2) | C6—C5—H5 | 120.3 |
| O2—N4—O1 | 123.1 (2) | C5—C6—N4 | 118.3 (2) |
| O2—N4—C6 | 118.5 (2) | C7—C6—N4 | 117.27 (19) |
| N2—C1—N1 | 109.02 (18) | C7—C6—C5 | 124.3 (2) |
| N3—C1—N1 | 126.0 (2) | C2—C7—C6 | 115.6 (2) |
| N3—C1—N2 | 125.0 (2) | C2—C7—H7 | 122.2 |
| N1—C2—C3 | 106.60 (18) | C6—C7—H7 | 122.2 |
| C7—C2—N1 | 131.6 (2) |
| H··· | ||||
| C7—H7···Cl1 | 0.93 | 2.75 | 3.436 (2) | 132 |
| N1—H1A···Cl1 | 0.86 | 2.61 | 3.2830 (19) | 135 |
| N1—H1A···Cl1i | 0.86 | 2.76 | 3.4102 (19) | 134 |
| N3—H3A···Cl1ii | 0.86 | 2.55 | 3.269 (2) | 142 |
| N2—H2A···Cl1ii | 0.86 | 2.31 | 3.0601 (19) | 145 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C7—H7⋯Cl1 | 0.93 | 2.75 | 3.436 (2) | 132 |
| N1—H1 | 0.86 | 2.61 | 3.2830 (19) | 135 |
| N1—H1 | 0.86 | 2.76 | 3.4102 (19) | 134 |
| N3—H3 | 0.86 | 2.55 | 3.269 (2) | 142 |
| N2—H2 | 0.86 | 2.31 | 3.0601 (19) | 145 |
Symmetry codes: (i) ; (ii) .