| Literature DB >> 21583597 |
Jerry P Jasinski, Ray J Butcher, Q N M Hakim Al-Arique, H S Yathirajan, A R Ramesha.
Abstract
In the title compound, C(13)H(9)ClN(2)O(3), an intra-molecular hydrogen bond between the carbonyl O and an amine H atom from the 2-amino-benzoyl group stabilizes the mol-ecule, keeping these two groups nearly in the same plane [dihedral angle 14.6 (6)°]. The dihedral angle between the mean planes of the planar 2-amino-benzoyl and 2-chloro-benzoyl groups is 73.8 (6)°. The crystal packing is stabilized by a collection of inter-mediate hydrogen-bonding inter-actions which forms an infinite N-H⋯O⋯H-N-H⋯O hydrogen-bonded chain along the c axis in concert with weak N-H⋯Cl inter-actions in the same direction, producing a two-dimensional inter-molecular bonding network parallel to (001). Additional weak C-Cl⋯Cg [Cl⋯Cg = 3.858 (3) Å] and N-O⋯Cg [O⋯Cg = 3.574 (1) and 3.868 (6) Å] π-ring inter-actions provide added support to the crystal stability. A MOPAC computational calculation gives support to these observations.Entities:
Year: 2009 PMID: 21583597 PMCID: PMC2977436 DOI: 10.1107/S160053680902755X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H9ClN2O3 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 4505 reflections |
| θ = 4.7–32.6° | |
| µ = 0.31 mm−1 | |
| β = 108.399 (3)° | Chunk, colorless |
| 0.47 × 0.36 × 0.28 mm | |
| Oxford Diffraction Gemini R CCD diffractometer | 4131 independent reflections |
| Radiation source: fine-focus sealed tube | 3069 reflections with |
| graphite | |
| Detector resolution: 10.5081 pixels mm-1 | θmax = 32.7°, θmin = 4.7° |
| φ and ω scans | |
| Absorption correction: multi-scan ( | |
| 8758 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 4131 reflections | (Δ/σ)max < 0.001 |
| 172 parameters | Δρmax = 0.42 e Å−3 |
| 0 restraints | Δρmin = −0.27 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl | 0.96431 (3) | 0.63182 (3) | 0.78827 (3) | 0.02769 (10) | |
| O1 | 0.48712 (10) | 0.77733 (9) | 0.32532 (9) | 0.0350 (2) | |
| O2 | 0.50201 (9) | 0.76958 (8) | 0.52898 (8) | 0.0271 (2) | |
| O3 | 0.82129 (9) | 0.31290 (8) | 0.73196 (7) | 0.02303 (19) | |
| N1 | 0.82197 (10) | 0.31577 (9) | 0.48161 (9) | 0.0214 (2) | |
| H1A | 0.8367 | 0.2872 | 0.4120 | 0.026* | |
| H1B | 0.8515 | 0.2779 | 0.5561 | 0.026* | |
| N2 | 0.52756 (10) | 0.73094 (9) | 0.43331 (9) | 0.0211 (2) | |
| C1 | 0.75466 (11) | 0.41681 (10) | 0.47433 (10) | 0.0162 (2) | |
| C2 | 0.70760 (12) | 0.47688 (11) | 0.35352 (10) | 0.0197 (2) | |
| H2A | 0.7267 | 0.4453 | 0.2802 | 0.024* | |
| C3 | 0.63591 (12) | 0.57843 (11) | 0.33976 (10) | 0.0202 (2) | |
| H3A | 0.6049 | 0.6169 | 0.2579 | 0.024* | |
| C4 | 0.60840 (11) | 0.62550 (10) | 0.44837 (10) | 0.0169 (2) | |
| C5 | 0.65568 (10) | 0.57301 (10) | 0.56856 (10) | 0.0157 (2) | |
| H5A | 0.6376 | 0.6076 | 0.6410 | 0.019* | |
| C6 | 0.73013 (10) | 0.46916 (10) | 0.58484 (10) | 0.0148 (2) | |
| C7 | 0.77971 (11) | 0.41506 (10) | 0.71401 (10) | 0.0159 (2) | |
| C8 | 0.77845 (11) | 0.48654 (10) | 0.83067 (9) | 0.0154 (2) | |
| C9 | 0.85984 (11) | 0.58380 (11) | 0.87385 (10) | 0.0184 (2) | |
| C10 | 0.86275 (12) | 0.64296 (11) | 0.98728 (11) | 0.0228 (3) | |
| H10A | 0.9199 | 0.7088 | 1.0165 | 0.027* | |
| C11 | 0.78122 (12) | 0.60456 (12) | 1.05687 (11) | 0.0240 (3) | |
| H11A | 0.7827 | 0.6443 | 1.1345 | 0.029* | |
| C12 | 0.69750 (12) | 0.50870 (12) | 1.01432 (10) | 0.0214 (2) | |
| H12A | 0.6406 | 0.4839 | 1.0616 | 0.026* | |
| C13 | 0.69720 (11) | 0.44907 (10) | 0.90242 (10) | 0.0174 (2) | |
| H13A | 0.6413 | 0.3823 | 0.8744 | 0.021* |
| Cl | 0.02888 (16) | 0.03213 (19) | 0.02478 (15) | −0.01301 (13) | 0.01233 (12) | −0.00264 (12) |
| O1 | 0.0449 (6) | 0.0315 (6) | 0.0230 (4) | 0.0161 (5) | 0.0026 (4) | 0.0071 (4) |
| O2 | 0.0329 (5) | 0.0238 (5) | 0.0292 (4) | 0.0088 (4) | 0.0161 (4) | 0.0015 (4) |
| O3 | 0.0372 (5) | 0.0166 (4) | 0.0187 (4) | 0.0056 (4) | 0.0137 (3) | 0.0035 (3) |
| N1 | 0.0332 (5) | 0.0174 (5) | 0.0147 (4) | 0.0061 (4) | 0.0092 (4) | −0.0015 (4) |
| N2 | 0.0217 (5) | 0.0192 (5) | 0.0209 (5) | 0.0027 (4) | 0.0045 (4) | 0.0014 (4) |
| C1 | 0.0192 (5) | 0.0147 (5) | 0.0147 (5) | −0.0015 (4) | 0.0054 (4) | −0.0022 (4) |
| C2 | 0.0259 (6) | 0.0212 (6) | 0.0125 (4) | 0.0014 (5) | 0.0066 (4) | −0.0012 (4) |
| C3 | 0.0242 (5) | 0.0220 (6) | 0.0129 (5) | 0.0015 (5) | 0.0035 (4) | 0.0013 (4) |
| C4 | 0.0180 (5) | 0.0151 (6) | 0.0172 (5) | 0.0010 (4) | 0.0047 (4) | −0.0006 (4) |
| C5 | 0.0179 (5) | 0.0151 (6) | 0.0149 (5) | −0.0023 (4) | 0.0063 (4) | −0.0030 (4) |
| C6 | 0.0182 (5) | 0.0139 (5) | 0.0125 (4) | −0.0011 (4) | 0.0052 (4) | −0.0006 (4) |
| C7 | 0.0194 (5) | 0.0150 (5) | 0.0148 (5) | −0.0009 (4) | 0.0076 (4) | 0.0005 (4) |
| C8 | 0.0201 (5) | 0.0147 (5) | 0.0115 (4) | 0.0026 (4) | 0.0051 (4) | 0.0019 (4) |
| C9 | 0.0200 (5) | 0.0193 (6) | 0.0165 (5) | −0.0007 (4) | 0.0066 (4) | 0.0009 (4) |
| C10 | 0.0257 (6) | 0.0220 (6) | 0.0191 (5) | −0.0029 (5) | 0.0047 (4) | −0.0050 (5) |
| C11 | 0.0290 (6) | 0.0271 (7) | 0.0155 (5) | 0.0027 (5) | 0.0067 (4) | −0.0047 (5) |
| C12 | 0.0247 (6) | 0.0267 (7) | 0.0149 (5) | 0.0023 (5) | 0.0091 (4) | 0.0018 (4) |
| C13 | 0.0211 (5) | 0.0163 (6) | 0.0150 (5) | −0.0004 (4) | 0.0060 (4) | 0.0016 (4) |
| Cl—C9 | 1.7426 (12) | C5—C6 | 1.3972 (15) |
| O1—N2 | 1.2309 (13) | C5—H5A | 0.9500 |
| O2—N2 | 1.2326 (13) | C6—C7 | 1.4663 (15) |
| O3—C7 | 1.2322 (14) | C7—C8 | 1.5059 (15) |
| N1—C1 | 1.3385 (15) | C8—C9 | 1.3873 (16) |
| N1—H1A | 0.8800 | C8—C13 | 1.3975 (15) |
| N1—H1B | 0.8800 | C9—C10 | 1.3927 (16) |
| N2—C4 | 1.4498 (15) | C10—C11 | 1.3856 (18) |
| C1—C2 | 1.4201 (15) | C10—H10A | 0.9500 |
| C1—C6 | 1.4329 (14) | C11—C12 | 1.3868 (18) |
| C2—C3 | 1.3614 (17) | C11—H11A | 0.9500 |
| C2—H2A | 0.9500 | C12—C13 | 1.3882 (15) |
| C3—C4 | 1.4052 (15) | C12—H12A | 0.9500 |
| C3—H3A | 0.9500 | C13—H13A | 0.9500 |
| C4—C5 | 1.3754 (15) | ||
| C1—N1—H1A | 120.0 | C1—C6—C7 | 121.40 (10) |
| C1—N1—H1B | 120.0 | O3—C7—C6 | 123.11 (10) |
| H1A—N1—H1B | 120.0 | O3—C7—C8 | 118.06 (9) |
| O1—N2—O2 | 123.10 (11) | C6—C7—C8 | 118.83 (10) |
| O1—N2—C4 | 118.38 (10) | C9—C8—C13 | 118.76 (10) |
| O2—N2—C4 | 118.52 (9) | C9—C8—C7 | 122.77 (9) |
| N1—C1—C2 | 119.35 (10) | C13—C8—C7 | 118.36 (10) |
| N1—C1—C6 | 122.63 (10) | C8—C9—C10 | 121.23 (10) |
| C2—C1—C6 | 118.00 (10) | C8—C9—Cl | 120.08 (8) |
| C3—C2—C1 | 121.87 (10) | C10—C9—Cl | 118.67 (9) |
| C3—C2—H2A | 119.1 | C11—C10—C9 | 119.10 (11) |
| C1—C2—H2A | 119.1 | C11—C10—H10A | 120.5 |
| C2—C3—C4 | 119.06 (10) | C9—C10—H10A | 120.5 |
| C2—C3—H3A | 120.5 | C10—C11—C12 | 120.62 (11) |
| C4—C3—H3A | 120.5 | C10—C11—H11A | 119.7 |
| C5—C4—C3 | 121.35 (11) | C12—C11—H11A | 119.7 |
| C5—C4—N2 | 119.28 (10) | C11—C12—C13 | 119.78 (11) |
| C3—C4—N2 | 119.37 (10) | C11—C12—H12A | 120.1 |
| C4—C5—C6 | 120.43 (10) | C13—C12—H12A | 120.1 |
| C4—C5—H5A | 119.8 | C12—C13—C8 | 120.49 (11) |
| C6—C5—H5A | 119.8 | C12—C13—H13A | 119.8 |
| C5—C6—C1 | 119.20 (9) | C8—C13—H13A | 119.8 |
| C5—C6—C7 | 119.40 (9) | ||
| N1—C1—C2—C3 | 178.41 (11) | C1—C6—C7—O3 | −14.58 (17) |
| C6—C1—C2—C3 | −2.95 (17) | C5—C6—C7—C8 | −14.71 (16) |
| C1—C2—C3—C4 | 0.38 (18) | C1—C6—C7—C8 | 166.26 (10) |
| C2—C3—C4—C5 | 1.95 (18) | O3—C7—C8—C9 | 112.56 (13) |
| C2—C3—C4—N2 | −177.50 (11) | C6—C7—C8—C9 | −68.24 (14) |
| O1—N2—C4—C5 | 179.35 (11) | O3—C7—C8—C13 | −63.73 (14) |
| O2—N2—C4—C5 | −1.01 (16) | C6—C7—C8—C13 | 115.48 (12) |
| O1—N2—C4—C3 | −1.19 (17) | C13—C8—C9—C10 | 0.79 (17) |
| O2—N2—C4—C3 | 178.46 (11) | C7—C8—C9—C10 | −175.49 (11) |
| C3—C4—C5—C6 | −1.56 (17) | C13—C8—C9—Cl | 179.06 (8) |
| N2—C4—C5—C6 | 177.89 (10) | C7—C8—C9—Cl | 2.79 (15) |
| C4—C5—C6—C1 | −1.10 (16) | C8—C9—C10—C11 | −0.93 (18) |
| C4—C5—C6—C7 | 179.85 (10) | Cl—C9—C10—C11 | −179.23 (10) |
| N1—C1—C6—C5 | −178.14 (11) | C9—C10—C11—C12 | −0.14 (19) |
| C2—C1—C6—C5 | 3.28 (16) | C10—C11—C12—C13 | 1.31 (19) |
| N1—C1—C6—C7 | 0.89 (17) | C11—C12—C13—C8 | −1.45 (18) |
| C2—C1—C6—C7 | −177.69 (10) | C9—C8—C13—C12 | 0.41 (17) |
| C5—C6—C7—O3 | 164.45 (11) | C7—C8—C13—C12 | 176.85 (10) |
| H··· | ||||
| N1—H1A···O3i | 0.88 | 2.22 | 3.0733 (12) | 164 |
| N1—H1B···O3 | 0.88 | 2.07 | 2.7176 (12) | 130 |
| N1—H1B···Clii | 0.88 | 2.71 | 3.4848 (10) | 148 |
| C13—H13A···O2iii | 0.95 | 2.46 | 3.1862 (14) | 133 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.88 | 2.22 | 3.0733 (12) | 164 |
| N1—H1 | 0.88 | 2.07 | 2.7176 (12) | 130 |
| N1—H1 | 0.88 | 2.71 | 3.4848 (10) | 148 |
| C13—H13 | 0.95 | 2.46 | 3.1862 (14) | 133 |
Symmetry codes: (i) ; (ii) ; (iii) .