Literature DB >> 21583597

2-Amino-5-nitro-phenyl 2-chloro-phenyl ketone.

Jerry P Jasinski, Ray J Butcher, Q N M Hakim Al-Arique, H S Yathirajan, A R Ramesha.   

Abstract

In the title compound, C(13)n class="Chemical">H(9)ClN(2)O(3), an intra-molecular hydrogen bond between the carbonyl O and an amine H atom from the 2-amino-benzoyl group stabilizes the mol-ecule, keeping these two groups nearly in the same plane [dihedral angle 14.6 (6)°]. The dihedral angle between the mean planes of the planar 2-amino-benzoyl and 2-chloro-benzoyl groups is 73.8 (6)°. The crystal packing is stabilized by a collection of inter-mediate hydrogen-bonding inter-actions which forms an infinite N-H⋯O⋯H-N-H⋯O hydrogen-bonded chain along the c axis in concert with weak N-H⋯Cl inter-actions in the same direction, producing a two-dimensional inter-molecular bonding network parallel to (001). Additional weak C-Cl⋯Cg [Cl⋯Cg = 3.858 (3) Å] and N-O⋯Cg [O⋯Cg = 3.574 (1) and 3.868 (6) Å] π-ring inter-actions provide added support to the crystal stability. A MOPAC computational calculation gives support to these observations.

Entities:  

Year:  2009        PMID: 21583597      PMCID: PMC2977436          DOI: 10.1107/S160053680902755X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Cox et al. (1997 ▶, 2008 ▶); Harrison et al. (2005 ▶); Malathy Sony et al. (2005 ▶); Prasanna & Guru Row (2000 ▶); Xing et al. (2005 ▶). For background to benzophenone derivatives, see: Colpaert et al. (2004 ▶); Deleu et al. (1992 ▶); Duncan et al. (2004 ▶); Evans et al. (1987 ▶); Ottosen et al. (2003 ▶); Revesz et al. (2004 ▶); Sieroń et al. (2004 ▶); Wiesner et al. (2002 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶). For MOPAC n class="Species">AM1 computational calculations, see: Schmidt & Polik (2007 ▶).

Experimental

Crystal data

C13H9ClN2O3 M = 276.67 Monoclinic, a = 10.6120 (3) Å b = 11.3314 (3) Å c = 10.8456 (3) Å β = 108.399 (3)° V = 1237.50 (6) Å3 Z = 4 Mo Kα radiation μ = 0.31 mm−1 T = 110 K 0.47 × 0.36 × 0.28 mm

Data collection

Oxford Diffraction Gemini R CCD diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007 ▶) T min = 0.868, T max = 0.916 8758 measured reflections 4131 independent reflections 3069 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.099 S = 1.04 4131 reflections 172 parameters H-atom parameters constrained Δρmax = 0.42 e Å−3 Δρmin = −0.27 e Å−3 Data collection: CrysAlisPro (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlisPro; data reduction: CrysAlisPro; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680902755X/kj2123sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680902755X/kj2123Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H9ClN2O3F(000) = 568
Mr = 276.67Dx = 1.485 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4505 reflections
a = 10.6120 (3) Åθ = 4.7–32.6°
b = 11.3314 (3) ŵ = 0.31 mm1
c = 10.8456 (3) ÅT = 110 K
β = 108.399 (3)°Chunk, colorless
V = 1237.50 (6) Å30.47 × 0.36 × 0.28 mm
Z = 4
Oxford Diffraction Gemini R CCD diffractometer4131 independent reflections
Radiation source: fine-focus sealed tube3069 reflections with I > 2σ(I)
graphiteRint = 0.021
Detector resolution: 10.5081 pixels mm-1θmax = 32.7°, θmin = 4.7°
φ and ω scansh = −15→16
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007)k = −13→16
Tmin = 0.868, Tmax = 0.916l = −16→11
8758 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.099H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0548P)2] where P = (Fo2 + 2Fc2)/3
4131 reflections(Δ/σ)max < 0.001
172 parametersΔρmax = 0.42 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl0.96431 (3)0.63182 (3)0.78827 (3)0.02769 (10)
O10.48712 (10)0.77733 (9)0.32532 (9)0.0350 (2)
O20.50201 (9)0.76958 (8)0.52898 (8)0.0271 (2)
O30.82129 (9)0.31290 (8)0.73196 (7)0.02303 (19)
N10.82197 (10)0.31577 (9)0.48161 (9)0.0214 (2)
H1A0.83670.28720.41200.026*
H1B0.85150.27790.55610.026*
N20.52756 (10)0.73094 (9)0.43331 (9)0.0211 (2)
C10.75466 (11)0.41681 (10)0.47433 (10)0.0162 (2)
C20.70760 (12)0.47688 (11)0.35352 (10)0.0197 (2)
H2A0.72670.44530.28020.024*
C30.63591 (12)0.57843 (11)0.33976 (10)0.0202 (2)
H3A0.60490.61690.25790.024*
C40.60840 (11)0.62550 (10)0.44837 (10)0.0169 (2)
C50.65568 (10)0.57301 (10)0.56856 (10)0.0157 (2)
H5A0.63760.60760.64100.019*
C60.73013 (10)0.46916 (10)0.58484 (10)0.0148 (2)
C70.77971 (11)0.41506 (10)0.71401 (10)0.0159 (2)
C80.77845 (11)0.48654 (10)0.83067 (9)0.0154 (2)
C90.85984 (11)0.58380 (11)0.87385 (10)0.0184 (2)
C100.86275 (12)0.64296 (11)0.98728 (11)0.0228 (3)
H10A0.91990.70881.01650.027*
C110.78122 (12)0.60456 (12)1.05687 (11)0.0240 (3)
H11A0.78270.64431.13450.029*
C120.69750 (12)0.50870 (12)1.01432 (10)0.0214 (2)
H12A0.64060.48391.06160.026*
C130.69720 (11)0.44907 (10)0.90242 (10)0.0174 (2)
H13A0.64130.38230.87440.021*
U11U22U33U12U13U23
Cl0.02888 (16)0.03213 (19)0.02478 (15)−0.01301 (13)0.01233 (12)−0.00264 (12)
O10.0449 (6)0.0315 (6)0.0230 (4)0.0161 (5)0.0026 (4)0.0071 (4)
O20.0329 (5)0.0238 (5)0.0292 (4)0.0088 (4)0.0161 (4)0.0015 (4)
O30.0372 (5)0.0166 (4)0.0187 (4)0.0056 (4)0.0137 (3)0.0035 (3)
N10.0332 (5)0.0174 (5)0.0147 (4)0.0061 (4)0.0092 (4)−0.0015 (4)
N20.0217 (5)0.0192 (5)0.0209 (5)0.0027 (4)0.0045 (4)0.0014 (4)
C10.0192 (5)0.0147 (5)0.0147 (5)−0.0015 (4)0.0054 (4)−0.0022 (4)
C20.0259 (6)0.0212 (6)0.0125 (4)0.0014 (5)0.0066 (4)−0.0012 (4)
C30.0242 (5)0.0220 (6)0.0129 (5)0.0015 (5)0.0035 (4)0.0013 (4)
C40.0180 (5)0.0151 (6)0.0172 (5)0.0010 (4)0.0047 (4)−0.0006 (4)
C50.0179 (5)0.0151 (6)0.0149 (5)−0.0023 (4)0.0063 (4)−0.0030 (4)
C60.0182 (5)0.0139 (5)0.0125 (4)−0.0011 (4)0.0052 (4)−0.0006 (4)
C70.0194 (5)0.0150 (5)0.0148 (5)−0.0009 (4)0.0076 (4)0.0005 (4)
C80.0201 (5)0.0147 (5)0.0115 (4)0.0026 (4)0.0051 (4)0.0019 (4)
C90.0200 (5)0.0193 (6)0.0165 (5)−0.0007 (4)0.0066 (4)0.0009 (4)
C100.0257 (6)0.0220 (6)0.0191 (5)−0.0029 (5)0.0047 (4)−0.0050 (5)
C110.0290 (6)0.0271 (7)0.0155 (5)0.0027 (5)0.0067 (4)−0.0047 (5)
C120.0247 (6)0.0267 (7)0.0149 (5)0.0023 (5)0.0091 (4)0.0018 (4)
C130.0211 (5)0.0163 (6)0.0150 (5)−0.0004 (4)0.0060 (4)0.0016 (4)
Cl—C91.7426 (12)C5—C61.3972 (15)
O1—N21.2309 (13)C5—H5A0.9500
O2—N21.2326 (13)C6—C71.4663 (15)
O3—C71.2322 (14)C7—C81.5059 (15)
N1—C11.3385 (15)C8—C91.3873 (16)
N1—H1A0.8800C8—C131.3975 (15)
N1—H1B0.8800C9—C101.3927 (16)
N2—C41.4498 (15)C10—C111.3856 (18)
C1—C21.4201 (15)C10—H10A0.9500
C1—C61.4329 (14)C11—C121.3868 (18)
C2—C31.3614 (17)C11—H11A0.9500
C2—H2A0.9500C12—C131.3882 (15)
C3—C41.4052 (15)C12—H12A0.9500
C3—H3A0.9500C13—H13A0.9500
C4—C51.3754 (15)
C1—N1—H1A120.0C1—C6—C7121.40 (10)
C1—N1—H1B120.0O3—C7—C6123.11 (10)
H1A—N1—H1B120.0O3—C7—C8118.06 (9)
O1—N2—O2123.10 (11)C6—C7—C8118.83 (10)
O1—N2—C4118.38 (10)C9—C8—C13118.76 (10)
O2—N2—C4118.52 (9)C9—C8—C7122.77 (9)
N1—C1—C2119.35 (10)C13—C8—C7118.36 (10)
N1—C1—C6122.63 (10)C8—C9—C10121.23 (10)
C2—C1—C6118.00 (10)C8—C9—Cl120.08 (8)
C3—C2—C1121.87 (10)C10—C9—Cl118.67 (9)
C3—C2—H2A119.1C11—C10—C9119.10 (11)
C1—C2—H2A119.1C11—C10—H10A120.5
C2—C3—C4119.06 (10)C9—C10—H10A120.5
C2—C3—H3A120.5C10—C11—C12120.62 (11)
C4—C3—H3A120.5C10—C11—H11A119.7
C5—C4—C3121.35 (11)C12—C11—H11A119.7
C5—C4—N2119.28 (10)C11—C12—C13119.78 (11)
C3—C4—N2119.37 (10)C11—C12—H12A120.1
C4—C5—C6120.43 (10)C13—C12—H12A120.1
C4—C5—H5A119.8C12—C13—C8120.49 (11)
C6—C5—H5A119.8C12—C13—H13A119.8
C5—C6—C1119.20 (9)C8—C13—H13A119.8
C5—C6—C7119.40 (9)
N1—C1—C2—C3178.41 (11)C1—C6—C7—O3−14.58 (17)
C6—C1—C2—C3−2.95 (17)C5—C6—C7—C8−14.71 (16)
C1—C2—C3—C40.38 (18)C1—C6—C7—C8166.26 (10)
C2—C3—C4—C51.95 (18)O3—C7—C8—C9112.56 (13)
C2—C3—C4—N2−177.50 (11)C6—C7—C8—C9−68.24 (14)
O1—N2—C4—C5179.35 (11)O3—C7—C8—C13−63.73 (14)
O2—N2—C4—C5−1.01 (16)C6—C7—C8—C13115.48 (12)
O1—N2—C4—C3−1.19 (17)C13—C8—C9—C100.79 (17)
O2—N2—C4—C3178.46 (11)C7—C8—C9—C10−175.49 (11)
C3—C4—C5—C6−1.56 (17)C13—C8—C9—Cl179.06 (8)
N2—C4—C5—C6177.89 (10)C7—C8—C9—Cl2.79 (15)
C4—C5—C6—C1−1.10 (16)C8—C9—C10—C11−0.93 (18)
C4—C5—C6—C7179.85 (10)Cl—C9—C10—C11−179.23 (10)
N1—C1—C6—C5−178.14 (11)C9—C10—C11—C12−0.14 (19)
C2—C1—C6—C53.28 (16)C10—C11—C12—C131.31 (19)
N1—C1—C6—C70.89 (17)C11—C12—C13—C8−1.45 (18)
C2—C1—C6—C7−177.69 (10)C9—C8—C13—C120.41 (17)
C5—C6—C7—O3164.45 (11)C7—C8—C13—C12176.85 (10)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O3i0.882.223.0733 (12)164
N1—H1B···O30.882.072.7176 (12)130
N1—H1B···Clii0.882.713.4848 (10)148
C13—H13A···O2iii0.952.463.1862 (14)133
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O3i0.882.223.0733 (12)164
N1—H1B⋯O30.882.072.7176 (12)130
N1—H1B⋯Clii0.882.713.4848 (10)148
C13—H13A⋯O2iii0.952.463.1862 (14)133

Symmetry codes: (i) ; (ii) ; (iii) .

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