Literature DB >> 21583596

2-{(E)-[1-(2-Hydroxy-ethyl)-3,3-dimethyl-3H-indol-1-ium-2-yl]vin-yl}-6-hydroxy-meth-yl-4-nitro-phenolate dihydrate.

Mark A Rodriguez, Greg O'Bryan, William J Andrzejewski, James R McElhanon.   

Abstract

The title merocyanine-type mol-ecule, C(21)H(22)N(2)O(5)·2H(2)O, crystallizes in a zwitterionic form and has an E configuration at the styryl C=C bond. The styryl part of the mol-ecule and the indolium ring are slightly twisted and form a dihedral angle of 13.4 (1)°. The 1.274 (3) Å C-O bond length in the phenolate fragment is the longest among similar mol-ecules. Hydrogen bonds between solvent water mol-ecules, two hydroxyl groups and the phenolate O atom dictate the packing arrangement of mol-ecules in the crystal and join the mol-ecules into a two-dimensional polymeric network which propagates parallel to (001). Four water mol-ecules and four hydr-oxy groups form a centrosymmetric homodromic cyclic motif of O-H⋯O hydrogen bonds. Another cyclic centrosymmetric motif is generated by four water mol-ecules and two phenolate O atoms.

Entities:  

Year:  2009        PMID: 21583596      PMCID: PMC2977230          DOI: 10.1107/S1600536809027238

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

This structure is similar to the perviously reported trans-MEH compound, see: Raymo et al. (2003 ▶). For similar structures, see also: Aldoshin & Atovmyan (1985 ▶), Hobley et al. (1999 ▶), Zou et al. (2003 ▶). For the synthetic procedure, see: Raymo & Giordani (2001 ▶).

Experimental

Crystal data

C21H22N2O5·2H2O M = 418.44 Triclinic, a = 7.377 (2) Å b = 8.868 (2) Å c = 16.817 (5) Å α = 94.603 (5)° β = 101.639 (6)° γ = 102.140 (7)° V = 1044.8 (5) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 183 K 0.10 × 0.10 × 0.10 mm

Data collection

Bruker APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1999 ▶) T min = 0.981, T max = 0.990 7525 measured reflections 3651 independent reflections 2472 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.134 S = 1.02 3651 reflections 271 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.20 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: XSHELL (Bruker, 2000 ▶); molecular graphics: XSHELL and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809027238/gk2221sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809027238/gk2221Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H22N2O5·2H2OZ = 2
Mr = 418.44F(000) = 444
Triclinic, P1Dx = 1.330 Mg m3Dm = 1.31 (8) Mg m3Dm measured by picnometer
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.377 (2) ÅCell parameters from 200 reflections
b = 8.868 (2) Åθ = 1–25°
c = 16.817 (5) ŵ = 0.10 mm1
α = 94.603 (5)°T = 183 K
β = 101.639 (6)°Block, dark red
γ = 102.140 (7)°0.10 × 0.10 × 0.10 mm
V = 1044.8 (5) Å3
Bruker APEX CCD area-detector diffractometer3651 independent reflections
Radiation source: fine-focus sealed tube2472 reflections with I > 2σ(I)
graphiteRint = 0.039
φ and ω scansθmax = 25.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1999)h = −8→8
Tmin = 0.981, Tmax = 0.990k = −10→10
7525 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.134H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0611P)2 + 0.0096P] where P = (Fo2 + 2Fc2)/3
3651 reflections(Δ/σ)max < 0.001
271 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.4314 (3)0.7565 (2)0.27176 (12)0.0266 (5)
N2−0.7317 (3)0.3125 (2)0.07265 (13)0.0297 (5)
O10.3009 (3)0.8842 (2)0.40555 (12)0.0453 (5)
H10.31720.97300.39030.054*
O2−0.1195 (2)0.4576 (2)0.33751 (11)0.0348 (5)
O3−0.7048 (3)0.3290 (2)0.00334 (11)0.0399 (5)
O4−0.8914 (3)0.2639 (2)0.08513 (12)0.0439 (6)
O5−0.6302 (2)0.1775 (2)0.36144 (11)0.0376 (5)
H5−0.70150.22850.37870.045*
C10.5663 (3)0.8684 (3)0.24386 (15)0.0275 (6)
C20.7509 (4)0.9396 (3)0.28370 (17)0.0337 (7)
H2A0.80740.91500.33550.040*
C30.8489 (4)1.0488 (3)0.24380 (18)0.0392 (7)
H30.97551.10270.26940.047*
C40.7670 (4)1.0812 (3)0.16759 (18)0.0381 (7)
H40.83801.15640.14160.046*
C50.5822 (4)1.0052 (3)0.12871 (17)0.0331 (7)
H5A0.52671.02670.07600.040*
C60.4804 (3)0.8976 (3)0.16797 (15)0.0251 (6)
C70.2797 (3)0.8003 (3)0.14308 (14)0.0248 (6)
C80.2563 (4)0.6884 (3)0.06505 (15)0.0308 (6)
H8A0.26920.74820.01920.046*
H8B0.13020.61720.05290.046*
H8C0.35450.62850.07340.046*
C90.1368 (4)0.9048 (3)0.12986 (17)0.0355 (7)
H9A0.14980.97160.18100.053*
H9B0.00710.83980.11320.053*
H9C0.16250.96970.08710.053*
C100.2648 (3)0.7159 (3)0.21803 (15)0.0246 (6)
C110.4762 (4)0.7097 (3)0.35407 (15)0.0311 (6)
H11A0.60300.68510.36390.037*
H11B0.38130.61470.35750.037*
C120.4755 (4)0.8380 (3)0.41955 (16)0.0392 (7)
H12A0.49800.80060.47380.047*
H12B0.58040.92880.42030.047*
C130.1035 (3)0.6165 (3)0.23467 (15)0.0274 (6)
H130.11660.58110.28690.033*
C14−0.0685 (3)0.5680 (3)0.18168 (16)0.0275 (6)
H14−0.07600.59850.12840.033*
C15−0.2409 (3)0.4756 (3)0.19654 (15)0.0244 (6)
C16−0.3992 (3)0.4350 (3)0.13128 (15)0.0249 (6)
H16−0.38830.46510.07920.030*
C17−0.5708 (3)0.3522 (3)0.14124 (15)0.0249 (6)
C18−0.5931 (3)0.3052 (3)0.21741 (15)0.0252 (6)
H18−0.71420.25170.22370.030*
C19−0.4402 (4)0.3369 (3)0.28191 (15)0.0250 (6)
C20−0.2575 (4)0.4255 (3)0.27503 (15)0.0266 (6)
C21−0.4511 (4)0.2795 (3)0.36328 (16)0.0327 (7)
H21A−0.34870.22400.37910.039*
H21B−0.42920.36990.40540.039*
O100.9517 (3)0.7347 (2)0.43717 (12)0.0471 (6)
H10A1.07290.79790.43500.071*
H10B0.93190.63490.40700.071*
O200.1635 (3)0.3445 (3)0.42365 (13)0.0642 (7)
H20B0.10480.30710.46590.096*
H20A0.06280.37210.38720.096*
U11U22U33U12U13U23
N10.0212 (12)0.0303 (12)0.0277 (12)0.0033 (10)0.0063 (10)0.0044 (10)
N20.0267 (13)0.0250 (12)0.0348 (14)−0.0003 (10)0.0046 (11)0.0106 (10)
O10.0443 (13)0.0374 (12)0.0578 (14)0.0064 (10)0.0235 (11)0.0051 (10)
O20.0280 (11)0.0442 (12)0.0284 (10)0.0022 (9)0.0019 (9)0.0099 (9)
O30.0369 (12)0.0498 (13)0.0275 (11)−0.0016 (10)0.0049 (9)0.0094 (9)
O40.0216 (11)0.0570 (13)0.0477 (13)−0.0046 (10)0.0038 (9)0.0221 (10)
O50.0340 (11)0.0422 (12)0.0401 (11)0.0048 (9)0.0168 (9)0.0148 (9)
C10.0214 (14)0.0312 (15)0.0306 (15)0.0028 (12)0.0119 (12)0.0014 (12)
C20.0203 (15)0.0408 (17)0.0372 (16)0.0033 (13)0.0063 (12)−0.0003 (13)
C30.0215 (15)0.0390 (17)0.054 (2)−0.0017 (13)0.0140 (14)−0.0045 (15)
C40.0347 (17)0.0322 (16)0.053 (2)0.0054 (14)0.0255 (15)0.0068 (14)
C50.0342 (17)0.0317 (16)0.0372 (17)0.0073 (13)0.0163 (14)0.0070 (13)
C60.0252 (14)0.0232 (14)0.0272 (14)0.0053 (11)0.0081 (12)−0.0006 (11)
C70.0238 (14)0.0268 (14)0.0245 (14)0.0064 (12)0.0065 (11)0.0030 (11)
C80.0326 (16)0.0335 (16)0.0275 (15)0.0082 (13)0.0086 (12)0.0054 (12)
C90.0275 (16)0.0291 (15)0.0486 (18)0.0047 (13)0.0075 (13)0.0042 (13)
C100.0209 (14)0.0281 (14)0.0245 (14)0.0061 (12)0.0054 (11)−0.0003 (11)
C110.0268 (15)0.0379 (16)0.0270 (15)0.0074 (13)0.0009 (12)0.0085 (13)
C120.0405 (18)0.0474 (19)0.0272 (15)0.0073 (15)0.0049 (14)0.0047 (13)
C130.0238 (15)0.0321 (15)0.0242 (14)0.0016 (12)0.0041 (12)0.0066 (11)
C140.0284 (15)0.0276 (14)0.0267 (14)0.0038 (12)0.0090 (12)0.0035 (11)
C150.0225 (14)0.0223 (13)0.0293 (14)0.0054 (11)0.0073 (12)0.0043 (11)
C160.0265 (15)0.0230 (13)0.0256 (14)0.0028 (11)0.0085 (12)0.0074 (11)
C170.0214 (14)0.0227 (13)0.0284 (14)0.0023 (11)0.0031 (11)0.0041 (11)
C180.0223 (14)0.0221 (13)0.0320 (15)0.0027 (11)0.0090 (12)0.0065 (11)
C190.0271 (15)0.0211 (13)0.0286 (14)0.0056 (11)0.0091 (12)0.0063 (11)
C200.0273 (15)0.0247 (14)0.0269 (15)0.0056 (12)0.0037 (12)0.0036 (11)
C210.0298 (16)0.0367 (16)0.0316 (15)0.0037 (13)0.0090 (13)0.0085 (13)
O100.0411 (12)0.0499 (13)0.0513 (13)0.0091 (10)0.0144 (10)0.0054 (10)
O200.0526 (15)0.104 (2)0.0522 (14)0.0420 (14)0.0186 (12)0.0250 (14)
N1—C101.331 (3)C9—H9A0.9797
N1—C11.429 (3)C9—H9B0.9799
N1—C111.471 (3)C9—H9C0.9803
N2—O41.232 (3)C10—C131.416 (3)
N2—O31.236 (3)C11—C121.520 (4)
N2—C171.439 (3)C11—H11A0.9895
O1—C121.414 (3)C11—H11B0.9895
O1—H10.8400C12—H12A0.9904
O2—C201.273 (3)C12—H12B0.9898
O5—C211.429 (3)C13—C141.357 (3)
O5—H50.8405C13—H130.9492
C1—C61.376 (3)C14—C151.440 (3)
C1—C21.380 (3)C14—H140.9503
C2—C31.385 (4)C15—C161.393 (3)
C2—H2A0.9507C15—C201.446 (3)
C3—C41.382 (4)C16—C171.373 (3)
C3—H30.9503C16—H160.9504
C4—C51.387 (4)C17—C181.408 (3)
C4—H40.9500C18—C191.361 (3)
C5—C61.382 (3)C18—H180.9499
C5—H5A0.9502C19—C201.442 (3)
C6—C71.506 (3)C19—C211.509 (3)
C7—C101.527 (3)C21—H21A0.9901
C7—C81.538 (3)C21—H21B0.9898
C7—C91.539 (3)O10—H10A0.9594
C8—H8A0.9795O10—H10B0.9515
C8—H8B0.9805O20—H20B0.9502
C8—H8C0.9795O20—H20A0.9513
C10—N1—C1111.6 (2)C13—C10—C7128.7 (2)
C10—N1—C11127.0 (2)N1—C11—C12111.2 (2)
C1—N1—C11121.1 (2)N1—C11—H11A109.4
O4—N2—O3122.4 (2)C12—C11—H11A109.4
O4—N2—C17118.9 (2)N1—C11—H11B109.4
O3—N2—C17118.8 (2)C12—C11—H11B109.4
C12—O1—H1109.4H11A—C11—H11B108.0
C21—O5—H5109.4O1—C12—C11111.7 (2)
C6—C1—C2123.8 (2)O1—C12—H12A109.2
C6—C1—N1108.1 (2)C11—C12—H12A109.3
C2—C1—N1128.0 (2)O1—C12—H12B109.3
C1—C2—C3116.1 (3)C11—C12—H12B109.3
C1—C2—H2A121.9H12A—C12—H12B108.0
C3—C2—H2A122.0C14—C13—C10125.0 (2)
C4—C3—C2121.5 (3)C14—C13—H13117.5
C4—C3—H3119.2C10—C13—H13117.5
C2—C3—H3119.2C13—C14—C15127.7 (2)
C3—C4—C5120.7 (3)C13—C14—H14116.1
C3—C4—H4119.6C15—C14—H14116.2
C5—C4—H4119.7C16—C15—C14117.3 (2)
C6—C5—C4118.8 (3)C16—C15—C20119.2 (2)
C6—C5—H5A120.6C14—C15—C20123.5 (2)
C4—C5—H5A120.6C17—C16—C15120.9 (2)
C1—C6—C5119.0 (2)C17—C16—H16119.5
C1—C6—C7109.7 (2)C15—C16—H16119.6
C5—C6—C7131.3 (2)C16—C17—C18121.4 (2)
C6—C7—C10101.47 (19)C16—C17—N2119.5 (2)
C6—C7—C8110.0 (2)C18—C17—N2119.1 (2)
C10—C7—C8112.7 (2)C19—C18—C17119.7 (2)
C6—C7—C9110.5 (2)C19—C18—H18120.2
C10—C7—C9111.1 (2)C17—C18—H18120.2
C8—C7—C9110.8 (2)C18—C19—C20121.1 (2)
C7—C8—H8A109.4C18—C19—C21122.3 (2)
C7—C8—H8B109.5C20—C19—C21116.6 (2)
H8A—C8—H8B109.5O2—C20—C19119.4 (2)
C7—C8—H8C109.5O2—C20—C15122.9 (2)
H8A—C8—H8C109.5C19—C20—C15117.7 (2)
H8B—C8—H8C109.5O5—C21—C19112.6 (2)
C7—C9—H9A109.5O5—C21—H21A109.0
C7—C9—H9B109.5C19—C21—H21A109.1
H9A—C9—H9B109.4O5—C21—H21B109.1
C7—C9—H9C109.5C19—C21—H21B109.1
H9A—C9—H9C109.4H21A—C21—H21B107.8
H9B—C9—H9C109.5H10A—O10—H10B110.1
N1—C10—C13122.2 (2)H20B—O20—H20A102.9
N1—C10—C7109.0 (2)
D—H···AD—HH···AD···AD—H···A
O20—H20B···O10i0.961.802.739 (4)166
O10—H10B···O2ii0.951.812.750 (3)172
O20—H20A···O20.951.782.714 (3)167
O10—H10A···O1ii0.951.872.811 (3)165
O5—H5···O20iii0.841.802.633 (3)175
O1—H1···O5iv0.841.902.734 (3)176
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O20—H20B⋯O10i0.961.802.739 (4)166
O10—H10B⋯O2ii0.951.812.750 (3)172
O20—H20A⋯O20.951.782.714 (3)167
O10—H10A⋯O1ii0.951.872.811 (3)165
O5—H5⋯O20iii0.841.802.633 (3)175
O1—H1⋯O5iv0.841.902.734 (3)176

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  3 in total

1.  Signal processing at the molecular level.

Authors:  F M Raymo; S Giordani
Journal:  J Am Chem Soc       Date:  2001-05-16       Impact factor: 15.419

2.  Digital processing with a three-state molecular switch.

Authors:  Françisco M Raymo; Silvia Giordani; Andrew J P White; David J Williams
Journal:  J Org Chem       Date:  2003-05-30       Impact factor: 4.354

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  3 in total
  1 in total

1.  Stress sensing in polycaprolactone films via an embedded photochromic compound.

Authors:  Greg O'Bryan; Bryan M Wong; James R McElhanon
Journal:  ACS Appl Mater Interfaces       Date:  2010-06       Impact factor: 9.229

  1 in total

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