| Literature DB >> 21583596 |
Mark A Rodriguez, Greg O'Bryan, William J Andrzejewski, James R McElhanon.
Abstract
The title merocyanine-type mol-ecule, C(21)H(22)N(2)O(5)·2H(2)O, crystallizes in a zwitterionic form and has an E configuration at the styryl C=C bond. The styryl part of the mol-ecule and the indolium ring are slightly twisted and form a dihedral angle of 13.4 (1)°. The 1.274 (3) Å C-O bond length in the phenolate fragment is the longest among similar mol-ecules. Hydrogen bonds between solvent water mol-ecules, two hydroxyl groups and the phenolate O atom dictate the packing arrangement of mol-ecules in the crystal and join the mol-ecules into a two-dimensional polymeric network which propagates parallel to (001). Four water mol-ecules and four hydr-oxy groups form a centrosymmetric homodromic cyclic motif of O-H⋯O hydrogen bonds. Another cyclic centrosymmetric motif is generated by four water mol-ecules and two phenolate O atoms.Entities:
Year: 2009 PMID: 21583596 PMCID: PMC2977230 DOI: 10.1107/S1600536809027238
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C21H22N2O5·2H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 200 reflections | |
| θ = 1–25° | |
| µ = 0.10 mm−1 | |
| α = 94.603 (5)° | |
| β = 101.639 (6)° | Block, dark red |
| γ = 102.140 (7)° | 0.10 × 0.10 × 0.10 mm |
| Bruker APEX CCD area-detector diffractometer | 3651 independent reflections |
| Radiation source: fine-focus sealed tube | 2472 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.0°, θmin = 2.4° |
| Absorption correction: multi-scan ( | |
| 7525 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3651 reflections | (Δ/σ)max < 0.001 |
| 271 parameters | Δρmax = 0.23 e Å−3 |
| 0 restraints | Δρmin = −0.20 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.4314 (3) | 0.7565 (2) | 0.27176 (12) | 0.0266 (5) | |
| N2 | −0.7317 (3) | 0.3125 (2) | 0.07265 (13) | 0.0297 (5) | |
| O1 | 0.3009 (3) | 0.8842 (2) | 0.40555 (12) | 0.0453 (5) | |
| H1 | 0.3172 | 0.9730 | 0.3903 | 0.054* | |
| O2 | −0.1195 (2) | 0.4576 (2) | 0.33751 (11) | 0.0348 (5) | |
| O3 | −0.7048 (3) | 0.3290 (2) | 0.00334 (11) | 0.0399 (5) | |
| O4 | −0.8914 (3) | 0.2639 (2) | 0.08513 (12) | 0.0439 (6) | |
| O5 | −0.6302 (2) | 0.1775 (2) | 0.36144 (11) | 0.0376 (5) | |
| H5 | −0.7015 | 0.2285 | 0.3787 | 0.045* | |
| C1 | 0.5663 (3) | 0.8684 (3) | 0.24386 (15) | 0.0275 (6) | |
| C2 | 0.7509 (4) | 0.9396 (3) | 0.28370 (17) | 0.0337 (7) | |
| H2A | 0.8074 | 0.9150 | 0.3355 | 0.040* | |
| C3 | 0.8489 (4) | 1.0488 (3) | 0.24380 (18) | 0.0392 (7) | |
| H3 | 0.9755 | 1.1027 | 0.2694 | 0.047* | |
| C4 | 0.7670 (4) | 1.0812 (3) | 0.16759 (18) | 0.0381 (7) | |
| H4 | 0.8380 | 1.1564 | 0.1416 | 0.046* | |
| C5 | 0.5822 (4) | 1.0052 (3) | 0.12871 (17) | 0.0331 (7) | |
| H5A | 0.5267 | 1.0267 | 0.0760 | 0.040* | |
| C6 | 0.4804 (3) | 0.8976 (3) | 0.16797 (15) | 0.0251 (6) | |
| C7 | 0.2797 (3) | 0.8003 (3) | 0.14308 (14) | 0.0248 (6) | |
| C8 | 0.2563 (4) | 0.6884 (3) | 0.06505 (15) | 0.0308 (6) | |
| H8A | 0.2692 | 0.7482 | 0.0192 | 0.046* | |
| H8B | 0.1302 | 0.6172 | 0.0529 | 0.046* | |
| H8C | 0.3545 | 0.6285 | 0.0734 | 0.046* | |
| C9 | 0.1368 (4) | 0.9048 (3) | 0.12986 (17) | 0.0355 (7) | |
| H9A | 0.1498 | 0.9716 | 0.1810 | 0.053* | |
| H9B | 0.0071 | 0.8398 | 0.1132 | 0.053* | |
| H9C | 0.1625 | 0.9697 | 0.0871 | 0.053* | |
| C10 | 0.2648 (3) | 0.7159 (3) | 0.21803 (15) | 0.0246 (6) | |
| C11 | 0.4762 (4) | 0.7097 (3) | 0.35407 (15) | 0.0311 (6) | |
| H11A | 0.6030 | 0.6851 | 0.3639 | 0.037* | |
| H11B | 0.3813 | 0.6147 | 0.3575 | 0.037* | |
| C12 | 0.4755 (4) | 0.8380 (3) | 0.41955 (16) | 0.0392 (7) | |
| H12A | 0.4980 | 0.8006 | 0.4738 | 0.047* | |
| H12B | 0.5804 | 0.9288 | 0.4203 | 0.047* | |
| C13 | 0.1035 (3) | 0.6165 (3) | 0.23467 (15) | 0.0274 (6) | |
| H13 | 0.1166 | 0.5811 | 0.2869 | 0.033* | |
| C14 | −0.0685 (3) | 0.5680 (3) | 0.18168 (16) | 0.0275 (6) | |
| H14 | −0.0760 | 0.5985 | 0.1284 | 0.033* | |
| C15 | −0.2409 (3) | 0.4756 (3) | 0.19654 (15) | 0.0244 (6) | |
| C16 | −0.3992 (3) | 0.4350 (3) | 0.13128 (15) | 0.0249 (6) | |
| H16 | −0.3883 | 0.4651 | 0.0792 | 0.030* | |
| C17 | −0.5708 (3) | 0.3522 (3) | 0.14124 (15) | 0.0249 (6) | |
| C18 | −0.5931 (3) | 0.3052 (3) | 0.21741 (15) | 0.0252 (6) | |
| H18 | −0.7142 | 0.2517 | 0.2237 | 0.030* | |
| C19 | −0.4402 (4) | 0.3369 (3) | 0.28191 (15) | 0.0250 (6) | |
| C20 | −0.2575 (4) | 0.4255 (3) | 0.27503 (15) | 0.0266 (6) | |
| C21 | −0.4511 (4) | 0.2795 (3) | 0.36328 (16) | 0.0327 (7) | |
| H21A | −0.3487 | 0.2240 | 0.3791 | 0.039* | |
| H21B | −0.4292 | 0.3699 | 0.4054 | 0.039* | |
| O10 | 0.9517 (3) | 0.7347 (2) | 0.43717 (12) | 0.0471 (6) | |
| H10A | 1.0729 | 0.7979 | 0.4350 | 0.071* | |
| H10B | 0.9319 | 0.6349 | 0.4070 | 0.071* | |
| O20 | 0.1635 (3) | 0.3445 (3) | 0.42365 (13) | 0.0642 (7) | |
| H20B | 0.1048 | 0.3071 | 0.4659 | 0.096* | |
| H20A | 0.0628 | 0.3721 | 0.3872 | 0.096* |
| N1 | 0.0212 (12) | 0.0303 (12) | 0.0277 (12) | 0.0033 (10) | 0.0063 (10) | 0.0044 (10) |
| N2 | 0.0267 (13) | 0.0250 (12) | 0.0348 (14) | −0.0003 (10) | 0.0046 (11) | 0.0106 (10) |
| O1 | 0.0443 (13) | 0.0374 (12) | 0.0578 (14) | 0.0064 (10) | 0.0235 (11) | 0.0051 (10) |
| O2 | 0.0280 (11) | 0.0442 (12) | 0.0284 (10) | 0.0022 (9) | 0.0019 (9) | 0.0099 (9) |
| O3 | 0.0369 (12) | 0.0498 (13) | 0.0275 (11) | −0.0016 (10) | 0.0049 (9) | 0.0094 (9) |
| O4 | 0.0216 (11) | 0.0570 (13) | 0.0477 (13) | −0.0046 (10) | 0.0038 (9) | 0.0221 (10) |
| O5 | 0.0340 (11) | 0.0422 (12) | 0.0401 (11) | 0.0048 (9) | 0.0168 (9) | 0.0148 (9) |
| C1 | 0.0214 (14) | 0.0312 (15) | 0.0306 (15) | 0.0028 (12) | 0.0119 (12) | 0.0014 (12) |
| C2 | 0.0203 (15) | 0.0408 (17) | 0.0372 (16) | 0.0033 (13) | 0.0063 (12) | −0.0003 (13) |
| C3 | 0.0215 (15) | 0.0390 (17) | 0.054 (2) | −0.0017 (13) | 0.0140 (14) | −0.0045 (15) |
| C4 | 0.0347 (17) | 0.0322 (16) | 0.053 (2) | 0.0054 (14) | 0.0255 (15) | 0.0068 (14) |
| C5 | 0.0342 (17) | 0.0317 (16) | 0.0372 (17) | 0.0073 (13) | 0.0163 (14) | 0.0070 (13) |
| C6 | 0.0252 (14) | 0.0232 (14) | 0.0272 (14) | 0.0053 (11) | 0.0081 (12) | −0.0006 (11) |
| C7 | 0.0238 (14) | 0.0268 (14) | 0.0245 (14) | 0.0064 (12) | 0.0065 (11) | 0.0030 (11) |
| C8 | 0.0326 (16) | 0.0335 (16) | 0.0275 (15) | 0.0082 (13) | 0.0086 (12) | 0.0054 (12) |
| C9 | 0.0275 (16) | 0.0291 (15) | 0.0486 (18) | 0.0047 (13) | 0.0075 (13) | 0.0042 (13) |
| C10 | 0.0209 (14) | 0.0281 (14) | 0.0245 (14) | 0.0061 (12) | 0.0054 (11) | −0.0003 (11) |
| C11 | 0.0268 (15) | 0.0379 (16) | 0.0270 (15) | 0.0074 (13) | 0.0009 (12) | 0.0085 (13) |
| C12 | 0.0405 (18) | 0.0474 (19) | 0.0272 (15) | 0.0073 (15) | 0.0049 (14) | 0.0047 (13) |
| C13 | 0.0238 (15) | 0.0321 (15) | 0.0242 (14) | 0.0016 (12) | 0.0041 (12) | 0.0066 (11) |
| C14 | 0.0284 (15) | 0.0276 (14) | 0.0267 (14) | 0.0038 (12) | 0.0090 (12) | 0.0035 (11) |
| C15 | 0.0225 (14) | 0.0223 (13) | 0.0293 (14) | 0.0054 (11) | 0.0073 (12) | 0.0043 (11) |
| C16 | 0.0265 (15) | 0.0230 (13) | 0.0256 (14) | 0.0028 (11) | 0.0085 (12) | 0.0074 (11) |
| C17 | 0.0214 (14) | 0.0227 (13) | 0.0284 (14) | 0.0023 (11) | 0.0031 (11) | 0.0041 (11) |
| C18 | 0.0223 (14) | 0.0221 (13) | 0.0320 (15) | 0.0027 (11) | 0.0090 (12) | 0.0065 (11) |
| C19 | 0.0271 (15) | 0.0211 (13) | 0.0286 (14) | 0.0056 (11) | 0.0091 (12) | 0.0063 (11) |
| C20 | 0.0273 (15) | 0.0247 (14) | 0.0269 (15) | 0.0056 (12) | 0.0037 (12) | 0.0036 (11) |
| C21 | 0.0298 (16) | 0.0367 (16) | 0.0316 (15) | 0.0037 (13) | 0.0090 (13) | 0.0085 (13) |
| O10 | 0.0411 (12) | 0.0499 (13) | 0.0513 (13) | 0.0091 (10) | 0.0144 (10) | 0.0054 (10) |
| O20 | 0.0526 (15) | 0.104 (2) | 0.0522 (14) | 0.0420 (14) | 0.0186 (12) | 0.0250 (14) |
| N1—C10 | 1.331 (3) | C9—H9A | 0.9797 |
| N1—C1 | 1.429 (3) | C9—H9B | 0.9799 |
| N1—C11 | 1.471 (3) | C9—H9C | 0.9803 |
| N2—O4 | 1.232 (3) | C10—C13 | 1.416 (3) |
| N2—O3 | 1.236 (3) | C11—C12 | 1.520 (4) |
| N2—C17 | 1.439 (3) | C11—H11A | 0.9895 |
| O1—C12 | 1.414 (3) | C11—H11B | 0.9895 |
| O1—H1 | 0.8400 | C12—H12A | 0.9904 |
| O2—C20 | 1.273 (3) | C12—H12B | 0.9898 |
| O5—C21 | 1.429 (3) | C13—C14 | 1.357 (3) |
| O5—H5 | 0.8405 | C13—H13 | 0.9492 |
| C1—C6 | 1.376 (3) | C14—C15 | 1.440 (3) |
| C1—C2 | 1.380 (3) | C14—H14 | 0.9503 |
| C2—C3 | 1.385 (4) | C15—C16 | 1.393 (3) |
| C2—H2A | 0.9507 | C15—C20 | 1.446 (3) |
| C3—C4 | 1.382 (4) | C16—C17 | 1.373 (3) |
| C3—H3 | 0.9503 | C16—H16 | 0.9504 |
| C4—C5 | 1.387 (4) | C17—C18 | 1.408 (3) |
| C4—H4 | 0.9500 | C18—C19 | 1.361 (3) |
| C5—C6 | 1.382 (3) | C18—H18 | 0.9499 |
| C5—H5A | 0.9502 | C19—C20 | 1.442 (3) |
| C6—C7 | 1.506 (3) | C19—C21 | 1.509 (3) |
| C7—C10 | 1.527 (3) | C21—H21A | 0.9901 |
| C7—C8 | 1.538 (3) | C21—H21B | 0.9898 |
| C7—C9 | 1.539 (3) | O10—H10A | 0.9594 |
| C8—H8A | 0.9795 | O10—H10B | 0.9515 |
| C8—H8B | 0.9805 | O20—H20B | 0.9502 |
| C8—H8C | 0.9795 | O20—H20A | 0.9513 |
| C10—N1—C1 | 111.6 (2) | C13—C10—C7 | 128.7 (2) |
| C10—N1—C11 | 127.0 (2) | N1—C11—C12 | 111.2 (2) |
| C1—N1—C11 | 121.1 (2) | N1—C11—H11A | 109.4 |
| O4—N2—O3 | 122.4 (2) | C12—C11—H11A | 109.4 |
| O4—N2—C17 | 118.9 (2) | N1—C11—H11B | 109.4 |
| O3—N2—C17 | 118.8 (2) | C12—C11—H11B | 109.4 |
| C12—O1—H1 | 109.4 | H11A—C11—H11B | 108.0 |
| C21—O5—H5 | 109.4 | O1—C12—C11 | 111.7 (2) |
| C6—C1—C2 | 123.8 (2) | O1—C12—H12A | 109.2 |
| C6—C1—N1 | 108.1 (2) | C11—C12—H12A | 109.3 |
| C2—C1—N1 | 128.0 (2) | O1—C12—H12B | 109.3 |
| C1—C2—C3 | 116.1 (3) | C11—C12—H12B | 109.3 |
| C1—C2—H2A | 121.9 | H12A—C12—H12B | 108.0 |
| C3—C2—H2A | 122.0 | C14—C13—C10 | 125.0 (2) |
| C4—C3—C2 | 121.5 (3) | C14—C13—H13 | 117.5 |
| C4—C3—H3 | 119.2 | C10—C13—H13 | 117.5 |
| C2—C3—H3 | 119.2 | C13—C14—C15 | 127.7 (2) |
| C3—C4—C5 | 120.7 (3) | C13—C14—H14 | 116.1 |
| C3—C4—H4 | 119.6 | C15—C14—H14 | 116.2 |
| C5—C4—H4 | 119.7 | C16—C15—C14 | 117.3 (2) |
| C6—C5—C4 | 118.8 (3) | C16—C15—C20 | 119.2 (2) |
| C6—C5—H5A | 120.6 | C14—C15—C20 | 123.5 (2) |
| C4—C5—H5A | 120.6 | C17—C16—C15 | 120.9 (2) |
| C1—C6—C5 | 119.0 (2) | C17—C16—H16 | 119.5 |
| C1—C6—C7 | 109.7 (2) | C15—C16—H16 | 119.6 |
| C5—C6—C7 | 131.3 (2) | C16—C17—C18 | 121.4 (2) |
| C6—C7—C10 | 101.47 (19) | C16—C17—N2 | 119.5 (2) |
| C6—C7—C8 | 110.0 (2) | C18—C17—N2 | 119.1 (2) |
| C10—C7—C8 | 112.7 (2) | C19—C18—C17 | 119.7 (2) |
| C6—C7—C9 | 110.5 (2) | C19—C18—H18 | 120.2 |
| C10—C7—C9 | 111.1 (2) | C17—C18—H18 | 120.2 |
| C8—C7—C9 | 110.8 (2) | C18—C19—C20 | 121.1 (2) |
| C7—C8—H8A | 109.4 | C18—C19—C21 | 122.3 (2) |
| C7—C8—H8B | 109.5 | C20—C19—C21 | 116.6 (2) |
| H8A—C8—H8B | 109.5 | O2—C20—C19 | 119.4 (2) |
| C7—C8—H8C | 109.5 | O2—C20—C15 | 122.9 (2) |
| H8A—C8—H8C | 109.5 | C19—C20—C15 | 117.7 (2) |
| H8B—C8—H8C | 109.5 | O5—C21—C19 | 112.6 (2) |
| C7—C9—H9A | 109.5 | O5—C21—H21A | 109.0 |
| C7—C9—H9B | 109.5 | C19—C21—H21A | 109.1 |
| H9A—C9—H9B | 109.4 | O5—C21—H21B | 109.1 |
| C7—C9—H9C | 109.5 | C19—C21—H21B | 109.1 |
| H9A—C9—H9C | 109.4 | H21A—C21—H21B | 107.8 |
| H9B—C9—H9C | 109.5 | H10A—O10—H10B | 110.1 |
| N1—C10—C13 | 122.2 (2) | H20B—O20—H20A | 102.9 |
| N1—C10—C7 | 109.0 (2) |
| H··· | ||||
| O20—H20B···O10i | 0.96 | 1.80 | 2.739 (4) | 166 |
| O10—H10B···O2ii | 0.95 | 1.81 | 2.750 (3) | 172 |
| O20—H20A···O2 | 0.95 | 1.78 | 2.714 (3) | 167 |
| O10—H10A···O1ii | 0.95 | 1.87 | 2.811 (3) | 165 |
| O5—H5···O20iii | 0.84 | 1.80 | 2.633 (3) | 175 |
| O1—H1···O5iv | 0.84 | 1.90 | 2.734 (3) | 176 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O20—H20 | 0.96 | 1.80 | 2.739 (4) | 166 |
| O10—H10 | 0.95 | 1.81 | 2.750 (3) | 172 |
| O20—H20 | 0.95 | 1.78 | 2.714 (3) | 167 |
| O10—H10 | 0.95 | 1.87 | 2.811 (3) | 165 |
| O5—H5⋯O20iii | 0.84 | 1.80 | 2.633 (3) | 175 |
| O1—H1⋯O5iv | 0.84 | 1.90 | 2.734 (3) | 176 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .