Literature DB >> 21583579

3,4-Diamino-pyridinium 4-nitro-benzoate-4-nitro-benzoic acid (1/1).

Hoong-Kun Fun1, Kasthuri Balasubramani.   

Abstract

In the title compound, C(5)H(8)N(3) (+)·C(7)H(4)NO(4) (-)·C(7)H(5)NO(4), the non-H atoms of the 3,4-diamino-pyridinium cation are coplanar, with a maximum deviation of 0.022 (1) Å. The carboxyl-ate and nitro groups of the 4-nitro-benzoate anion are twisted out of the attached ring planes by dihedral angles of 15.89 (8) and 10.20 (8)°, respectively. In the 4-nitro-benzoic acid mol-ecule, the carboxyl and nitro groups form dihedral angles of 18.25 (8) and 6.55 (8)°, respectively, with the benzene ring. In the crystal, the constituent units form two-dimensional networks parallel to (001) by O-H⋯O, N--H⋯O and C-H⋯O hydrogen bonds. Weak π-π inter-actions involving inversion-related 4-nitro-benzoic acid mol-ecules [centroid-centroid distance = 3.7325 (8) Å] and inversion-related 4-nitro-benzoate mol-ecules [centroid-centroid distance = 3.7124 (8) Å] are also observed.

Entities:  

Year:  2009        PMID: 21583579      PMCID: PMC2977481          DOI: 10.1107/S1600536809027354

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to substituted pyridines, see: Pozharski et al. (1997 ▶); Katritzky et al. (1996 ▶); For related structures, see: Opozda et al. (2006 ▶); Rubin-Preminger & Englert (2007 ▶); Koleva et al. (2007 ▶, 2008 ▶); Fun & Balasubramani (2009 ▶). For bond-length data, see: Allen et al. (1987 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C5H8N3 +·C7H4NO4 −·C7H5NO4 M = 443.38 Triclinic, a = 6.8073 (2) Å b = 6.8087 (2) Å c = 21.0171 (5) Å α = 80.859 (1)° β = 83.253 (1)° γ = 78.549 (1)° V = 938.88 (5) Å3 Z = 2 Mo Kα radiation μ = 0.13 mm−1 T = 100 K 0.56 × 0.20 × 0.17 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.934, T max = 0.979 27907 measured reflections 5435 independent reflections 4025 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.190 S = 1.05 5435 reflections 353 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.81 e Å−3 Δρmin = −0.44 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809027354/ci2849sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809027354/ci2849Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H8N3+·C7H4NO4·C7H5NO4Z = 2
Mr = 443.38F(000) = 460
Triclinic, P1Dx = 1.568 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.8073 (2) ÅCell parameters from 7405 reflections
b = 6.8087 (2) Åθ = 3.1–33.7°
c = 21.0171 (5) ŵ = 0.13 mm1
α = 80.859 (1)°T = 100 K
β = 83.253 (1)°Block, yellow
γ = 78.549 (1)°0.56 × 0.20 × 0.17 mm
V = 938.88 (5) Å3
Bruker SMART APEXII CCD area-detector diffractometer5435 independent reflections
Radiation source: fine-focus sealed tube4025 reflections with I > 2σ(I)
graphiteRint = 0.041
φ and ω scansθmax = 30.0°, θmin = 1.0°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −9→9
Tmin = 0.934, Tmax = 0.979k = −9→9
27907 measured reflectionsl = −29→28
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.190H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.1091P)2 + 0.3802P] where P = (Fo2 + 2Fc2)/3
5435 reflections(Δ/σ)max = 0.001
353 parametersΔρmax = 0.81 e Å3
0 restraintsΔρmin = −0.44 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1A1.39968 (18)0.6458 (2)0.56237 (6)0.0292 (3)
O2A1.1299 (2)0.6247 (2)0.62692 (6)0.0282 (3)
O3A0.84687 (17)0.9461 (2)0.30121 (6)0.0235 (3)
O4A0.56283 (19)0.8966 (2)0.36256 (7)0.0342 (4)
C7A0.7456 (2)0.8934 (2)0.35545 (8)0.0193 (3)
C1A0.8875 (2)0.7614 (2)0.52810 (8)0.0175 (3)
C2A0.7744 (2)0.8188 (2)0.47485 (8)0.0178 (3)
C3A0.8705 (2)0.8287 (2)0.41221 (7)0.0160 (3)
C4A1.0802 (2)0.7779 (2)0.40257 (8)0.0173 (3)
C5A1.1946 (2)0.7216 (2)0.45525 (7)0.0166 (3)
C6A1.0950 (2)0.7158 (2)0.51679 (7)0.0155 (3)
N1A1.2168 (2)0.6579 (2)0.57258 (7)0.0186 (3)
O1B0.08979 (19)0.3360 (2)−0.05503 (7)0.0309 (3)
O2B0.3609 (2)0.3677 (2)−0.11725 (6)0.0285 (3)
O3B0.64656 (17)0.0180 (2)0.20718 (6)0.0239 (3)
H1O30.71840.00140.23700.036*
O4B0.91654 (18)0.1156 (2)0.14870 (6)0.0276 (3)
C7B0.7393 (2)0.0931 (2)0.15458 (8)0.0185 (3)
C1B0.2910 (2)0.2478 (2)0.05366 (8)0.0177 (3)
C2B0.4051 (2)0.1875 (2)0.10658 (7)0.0170 (3)
C3B0.6149 (2)0.1559 (2)0.09760 (8)0.0164 (3)
C4B0.7116 (2)0.1852 (2)0.03518 (8)0.0180 (3)
C5B0.5997 (2)0.2440 (2)−0.01814 (8)0.0177 (3)
C6B0.3922 (2)0.2731 (2)−0.00739 (7)0.0163 (3)
N1B0.2727 (2)0.3303 (2)−0.06376 (7)0.0188 (3)
N20.3773 (2)0.7229 (2)0.23610 (7)0.0261 (3)
N3−0.0247 (2)0.4644 (3)0.21167 (9)0.0355 (4)
N40.2251 (2)0.1578 (2)0.28541 (7)0.0254 (3)
C80.4928 (3)0.5748 (3)0.27289 (9)0.0243 (4)
C90.4450 (3)0.3893 (3)0.28994 (9)0.0242 (4)
C100.2719 (2)0.3463 (3)0.27034 (8)0.0204 (3)
C110.1493 (2)0.5011 (3)0.23126 (8)0.0229 (3)
C120.2073 (3)0.6893 (3)0.21562 (9)0.0241 (4)
H1N3−0.023 (4)0.312 (4)0.2071 (13)0.048 (7)*
H2N3−0.080 (4)0.564 (4)0.1805 (15)0.060 (8)*
H1N20.431 (3)0.851 (4)0.2220 (12)0.036 (6)*
H1N40.312 (3)0.070 (3)0.3102 (11)0.028 (5)*
H2N40.098 (3)0.146 (3)0.2834 (11)0.028 (6)*
H1A0.820 (3)0.765 (3)0.5715 (11)0.027 (5)*
H2A0.630 (4)0.852 (3)0.4818 (11)0.034 (6)*
H4A1.145 (3)0.772 (3)0.3597 (11)0.023 (5)*
H5A1.333 (3)0.687 (3)0.4501 (11)0.027 (5)*
H8A0.599 (4)0.613 (4)0.2850 (14)0.052 (8)*
H1B0.150 (4)0.265 (3)0.0608 (11)0.033 (6)*
H2B0.340 (3)0.173 (3)0.1505 (11)0.029 (6)*
H4B0.857 (4)0.163 (4)0.0290 (12)0.036 (6)*
H5B0.668 (4)0.250 (4)−0.0633 (12)0.036 (6)*
H90.524 (4)0.285 (4)0.3184 (12)0.041 (7)*
H120.147 (3)0.800 (4)0.1914 (12)0.034 (6)*
U11U22U33U12U13U23
O1A0.0199 (6)0.0440 (8)0.0234 (7)−0.0055 (5)−0.0076 (5)−0.0003 (6)
O2A0.0303 (7)0.0390 (7)0.0133 (6)−0.0033 (5)−0.0016 (5)−0.0015 (5)
O3A0.0195 (6)0.0354 (7)0.0147 (6)−0.0023 (5)−0.0024 (4)−0.0030 (5)
O4A0.0216 (6)0.0494 (8)0.0304 (7)−0.0152 (6)−0.0123 (5)0.0159 (6)
C7A0.0211 (7)0.0166 (7)0.0216 (8)−0.0049 (6)−0.0082 (6)−0.0007 (6)
C1A0.0199 (7)0.0178 (7)0.0150 (7)−0.0043 (5)−0.0003 (6)−0.0026 (5)
C2A0.0156 (7)0.0178 (7)0.0201 (8)−0.0033 (5)−0.0021 (6)−0.0022 (6)
C3A0.0173 (7)0.0151 (6)0.0158 (7)−0.0034 (5)−0.0034 (5)−0.0010 (5)
C4A0.0194 (7)0.0183 (7)0.0140 (7)−0.0032 (5)−0.0020 (5)−0.0018 (5)
C5A0.0156 (7)0.0186 (7)0.0158 (7)−0.0029 (5)−0.0015 (5)−0.0029 (5)
C6A0.0178 (7)0.0154 (6)0.0138 (7)−0.0029 (5)−0.0043 (5)−0.0017 (5)
N1A0.0223 (7)0.0190 (6)0.0151 (6)−0.0033 (5)−0.0047 (5)−0.0026 (5)
O1B0.0201 (6)0.0475 (8)0.0244 (7)−0.0067 (5)−0.0078 (5)0.0025 (6)
O2B0.0286 (6)0.0405 (7)0.0124 (6)0.0004 (5)−0.0014 (5)−0.0008 (5)
O3B0.0206 (6)0.0375 (7)0.0136 (6)−0.0041 (5)−0.0057 (4)−0.0020 (5)
O4B0.0197 (6)0.0396 (7)0.0237 (6)−0.0069 (5)−0.0077 (5)0.0014 (5)
C7B0.0193 (7)0.0195 (7)0.0172 (7)−0.0010 (6)−0.0052 (6)−0.0042 (6)
C1B0.0146 (7)0.0212 (7)0.0179 (7)−0.0024 (5)−0.0019 (5)−0.0050 (6)
C2B0.0182 (7)0.0206 (7)0.0125 (7)−0.0033 (5)−0.0023 (5)−0.0034 (5)
C3B0.0173 (7)0.0165 (7)0.0158 (7)−0.0025 (5)−0.0038 (5)−0.0028 (5)
C4B0.0164 (7)0.0206 (7)0.0174 (7)−0.0028 (5)−0.0022 (5)−0.0040 (6)
C5B0.0199 (7)0.0189 (7)0.0143 (7)−0.0040 (5)−0.0011 (5)−0.0025 (5)
C6B0.0185 (7)0.0170 (7)0.0137 (7)−0.0025 (5)−0.0047 (5)−0.0019 (5)
N1B0.0214 (6)0.0186 (6)0.0161 (6)−0.0015 (5)−0.0054 (5)−0.0021 (5)
N20.0330 (8)0.0230 (7)0.0230 (8)−0.0063 (6)0.0024 (6)−0.0071 (6)
N30.0229 (8)0.0494 (11)0.0333 (9)−0.0102 (7)−0.0129 (7)0.0087 (8)
N40.0211 (7)0.0290 (8)0.0251 (8)−0.0062 (6)−0.0041 (6)0.0025 (6)
C80.0315 (9)0.0230 (8)0.0215 (8)−0.0065 (7)−0.0059 (7)−0.0080 (6)
C90.0279 (8)0.0240 (8)0.0204 (8)−0.0003 (7)−0.0063 (6)−0.0049 (6)
C100.0203 (7)0.0244 (8)0.0156 (7)−0.0019 (6)0.0019 (6)−0.0057 (6)
C110.0168 (7)0.0332 (9)0.0177 (8)−0.0018 (6)0.0002 (6)−0.0048 (6)
C120.0248 (8)0.0243 (8)0.0202 (8)0.0018 (6)0.0007 (6)−0.0036 (6)
O1A—N1A1.2269 (18)C2B—C3B1.396 (2)
O2A—N1A1.2317 (18)C2B—H2B0.98 (2)
O3A—C7A1.299 (2)C3B—C4B1.400 (2)
O4A—C7A1.232 (2)C4B—C5B1.390 (2)
C7A—C3A1.504 (2)C4B—H4B0.97 (2)
C1A—C6A1.386 (2)C5B—C6B1.384 (2)
C1A—C2A1.393 (2)C5B—H5B1.00 (2)
C1A—H1A0.97 (2)C6B—N1B1.473 (2)
C2A—C3A1.397 (2)N2—C81.347 (2)
C2A—H2A0.96 (2)N2—C121.353 (2)
C3A—C4A1.399 (2)N2—H1N21.00 (2)
C4A—C5A1.389 (2)N3—C111.379 (2)
C4A—H4A0.96 (2)N3—H1N31.05 (3)
C5A—C6A1.386 (2)N3—H2N30.92 (3)
C5A—H5A0.92 (2)N4—C101.364 (2)
C6A—N1A1.4727 (19)N4—H1N40.90 (2)
O1B—N1B1.2307 (18)N4—H2N40.89 (2)
O2B—N1B1.2247 (18)C8—C91.349 (2)
O3B—C7B1.2913 (19)C8—H8A0.89 (3)
O3B—H1O30.82C9—C101.390 (2)
O4B—C7B1.2355 (19)C9—H90.97 (2)
C7B—C3B1.505 (2)C10—C111.421 (2)
C1B—C6B1.386 (2)C11—C121.394 (3)
C1B—C2B1.393 (2)C12—H120.89 (2)
C1B—H1B0.94 (2)
O4A—C7A—O3A125.20 (15)C5B—C4B—C3B120.32 (14)
O4A—C7A—C3A120.56 (15)C5B—C4B—H4B119.7 (14)
O3A—C7A—C3A114.22 (13)C3B—C4B—H4B120.0 (14)
C6A—C1A—C2A118.09 (14)C6B—C5B—C4B118.05 (14)
C6A—C1A—H1A122.4 (13)C6B—C5B—H5B121.0 (14)
C2A—C1A—H1A119.3 (13)C4B—C5B—H5B120.6 (14)
C1A—C2A—C3A120.10 (14)C5B—C6B—C1B123.32 (14)
C1A—C2A—H2A119.2 (14)C5B—C6B—N1B118.39 (14)
C3A—C2A—H2A120.7 (14)C1B—C6B—N1B118.28 (13)
C2A—C3A—C4A120.26 (14)O2B—N1B—O1B123.15 (14)
C2A—C3A—C7A119.19 (14)O2B—N1B—C6B118.26 (13)
C4A—C3A—C7A120.55 (14)O1B—N1B—C6B118.58 (13)
C5A—C4A—C3A120.19 (14)C8—N2—C12120.32 (15)
C5A—C4A—H4A119.4 (12)C8—N2—H1N2116.5 (14)
C3A—C4A—H4A120.3 (12)C12—N2—H1N2122.9 (14)
C6A—C5A—C4A118.16 (14)C11—N3—H1N3114.8 (14)
C6A—C5A—H5A120.1 (14)C11—N3—H2N3112.8 (18)
C4A—C5A—H5A121.7 (14)H1N3—N3—H2N3119 (2)
C1A—C6A—C5A123.18 (14)C10—N4—H1N4113.8 (14)
C1A—C6A—N1A118.74 (13)C10—N4—H2N4117.7 (14)
C5A—C6A—N1A118.08 (13)H1N4—N4—H2N4124 (2)
O1A—N1A—O2A123.50 (14)N2—C8—C9121.67 (17)
O1A—N1A—C6A118.07 (13)N2—C8—H8A113.6 (18)
O2A—N1A—C6A118.43 (13)C9—C8—H8A124.7 (18)
C7B—O3B—H1O3109.5C8—C9—C10120.49 (16)
O4B—C7B—O3B125.03 (14)C8—C9—H9121.6 (14)
O4B—C7B—C3B119.89 (14)C10—C9—H9117.7 (14)
O3B—C7B—C3B115.08 (13)N4—C10—C9121.17 (15)
C6B—C1B—C2B117.96 (14)N4—C10—C11120.42 (16)
C6B—C1B—H1B123.3 (15)C9—C10—C11118.34 (16)
C2B—C1B—H1B118.7 (15)N3—C11—C12121.98 (16)
C1B—C2B—C3B120.33 (14)N3—C11—C10119.85 (16)
C1B—C2B—H2B120.5 (13)C12—C11—C10118.13 (16)
C3B—C2B—H2B119.1 (13)N2—C12—C11121.03 (16)
C2B—C3B—C4B120.01 (14)N2—C12—H12110.3 (14)
C2B—C3B—C7B120.67 (14)C11—C12—H12128.6 (15)
C4B—C3B—C7B119.31 (13)
C6A—C1A—C2A—C3A0.1 (2)O3B—C7B—C3B—C4B−162.32 (14)
C1A—C2A—C3A—C4A1.0 (2)C2B—C3B—C4B—C5B−0.6 (2)
C1A—C2A—C3A—C7A−179.27 (14)C7B—C3B—C4B—C5B−179.72 (14)
O4A—C7A—C3A—C2A−15.2 (2)C3B—C4B—C5B—C6B0.3 (2)
O3A—C7A—C3A—C2A163.72 (14)C4B—C5B—C6B—C1B0.4 (2)
O4A—C7A—C3A—C4A164.48 (16)C4B—C5B—C6B—N1B−178.44 (13)
O3A—C7A—C3A—C4A−16.6 (2)C2B—C1B—C6B—C5B−0.8 (2)
C2A—C3A—C4A—C5A−1.4 (2)C2B—C1B—C6B—N1B178.02 (13)
C7A—C3A—C4A—C5A178.91 (14)C5B—C6B—N1B—O2B−6.6 (2)
C3A—C4A—C5A—C6A0.6 (2)C1B—C6B—N1B—O2B174.52 (14)
C2A—C1A—C6A—C5A−1.0 (2)C5B—C6B—N1B—O1B172.62 (14)
C2A—C1A—C6A—N1A179.05 (13)C1B—C6B—N1B—O1B−6.3 (2)
C4A—C5A—C6A—C1A0.7 (2)C12—N2—C8—C90.6 (3)
C4A—C5A—C6A—N1A−179.40 (13)N2—C8—C9—C10−0.7 (3)
C1A—C6A—N1A—O1A−169.88 (14)C8—C9—C10—N4177.85 (16)
C5A—C6A—N1A—O1A10.2 (2)C8—C9—C10—C111.0 (3)
C1A—C6A—N1A—O2A10.0 (2)N4—C10—C11—N34.0 (3)
C5A—C6A—N1A—O2A−169.97 (14)C9—C10—C11—N3−179.15 (16)
C6B—C1B—C2B—C3B0.5 (2)N4—C10—C11—C12−178.05 (16)
C1B—C2B—C3B—C4B0.2 (2)C9—C10—C11—C12−1.2 (2)
C1B—C2B—C3B—C7B179.27 (14)C8—N2—C12—C11−0.8 (3)
O4B—C7B—C3B—C2B−161.34 (15)N3—C11—C12—N2179.05 (17)
O3B—C7B—C3B—C2B18.6 (2)C10—C11—C12—N21.1 (2)
O4B—C7B—C3B—C4B17.8 (2)
D—H···AD—HH···AD···AD—H···A
O3B—H1O3···O3Ai0.821.652.463 (2)173
N3—H1N3···O4Bii1.05 (3)2.08 (3)3.008 (3)146 (2)
N3—H2N3···O2Biii0.92 (3)2.39 (3)3.129 (2)138 (2)
N2—H1N2···O3Biv1.00 (2)2.00 (2)2.929 (2)154 (2)
N4—H1N4···O4Ai0.90 (2)2.18 (2)3.068 (2)169 (2)
N4—H2N4···O3Av0.89 (2)2.35 (2)3.152 (2)150 (2)
C1B—H1B···O4Bii0.94 (2)2.52 (2)3.231 (2)133 (2)
C4B—H4B···O1Bvi0.97 (2)2.54 (2)3.250 (2)130 (2)
C12—H12···O4Bvii0.89 (2)2.50 (2)3.376 (2)165 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3B—H1O3⋯O3Ai0.821.652.463 (2)173
N3—H1N3⋯O4Bii1.05 (3)2.08 (3)3.008 (3)146 (2)
N3—H2N3⋯O2Biii0.92 (3)2.39 (3)3.129 (2)138 (2)
N2—H1N2⋯O3Biv1.00 (2)2.00 (2)2.929 (2)154 (2)
N4—H1N4⋯O4Ai0.90 (2)2.18 (2)3.068 (2)169 (2)
N4—H2N4⋯O3Av0.89 (2)2.35 (2)3.152 (2)150 (2)
C1B—H1B⋯O4Bii0.94 (2)2.52 (2)3.231 (2)133 (2)
C4B—H4B⋯O1Bvi0.97 (2)2.54 (2)3.250 (2)130 (2)
C12—H12⋯O4Bvii0.89 (2)2.50 (2)3.376 (2)165 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  3,4-Diamino-pyridinium hydrogen succinate.

Authors:  Hoong-Kun Fun; Kasthuri Balasubramani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-10

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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