Literature DB >> 21583548

3-Ethynyl-2,2,5,5-tetra-methyl-1-oxyl-3-pyrroline.

Olga Frolow1, Jan W Bats, Joachim W Engels.   

Abstract

The five-membered ring of the title compound, C(10)H(14)NO, is almost planar [mean deviation from best plane = 0.006 (1) Å]. The N-O bond is in the plane of the five-membered ring. The mol-ecule is positioned about a pseudo-mirror plane at y = 0.375. In the crystal, mol-ecules are connected by inter-molecular C-H⋯O contacts into layers parallel to (010).

Entities:  

Year:  2009        PMID: 21583548      PMCID: PMC2977453          DOI: 10.1107/S1600536809026725

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation of the title compound, see: Schiemann et al. (2007 ▶). For its application as a spin label, see: Schiemann et al. (2007 ▶); Piton et al. (2007 ▶). For the crystal structure of a related compound, see: Fritscher et al. (2002 ▶).

Experimental

Crystal data

C10H14NO M = 164.22 Monoclinic, a = 7.9326 (15) Å b = 19.058 (4) Å c = 6.5989 (11) Å β = 104.333 (14)° V = 966.6 (3) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 167 K 0.60 × 0.55 × 0.07 mm

Data collection

Siemens SMART 1K CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.870, T max = 0.995 16848 measured reflections 3301 independent reflections 2214 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.157 S = 1.19 3301 reflections 121 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.44 e Å−3 Δρmin = −0.23 e Å−3 Data collection: SMART (Siemens, 1995 ▶); cell refinement: SMART; data reduction: SAINT (Siemens, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809026725/nc2152sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809026725/nc2152Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H14NOF(000) = 356
Mr = 164.22Dx = 1.129 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 130 reflections
a = 7.9326 (15) Åθ = 3–23°
b = 19.058 (4) ŵ = 0.07 mm1
c = 6.5989 (11) ÅT = 167 K
β = 104.333 (14)°Plate, yellow
V = 966.6 (3) Å30.6 × 0.55 × 0.07 mm
Z = 4
Siemens SMART 1K CCD diffractometer3301 independent reflections
Radiation source: normal-focus sealed tube2214 reflections with I > 2σ(I)
graphiteRint = 0.035
ω scansθmax = 32.4°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 2000)h = −11→11
Tmin = 0.870, Tmax = 0.995k = −27→28
16848 measured reflectionsl = −9→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.062Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.157H atoms treated by a mixture of independent and constrained refinement
S = 1.19w = 1/[σ2(Fo2) + (0.05P)2 + 0.35P] where P = (Fo2 + 2Fc2)/3
3301 reflections(Δ/σ)max = 0.005
121 parametersΔρmax = 0.44 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.62303 (13)0.37389 (6)0.53230 (15)0.0287 (3)
N10.54492 (14)0.37427 (7)0.33858 (17)0.0219 (2)
C10.63968 (16)0.37208 (8)0.1714 (2)0.0208 (3)
C20.48802 (18)0.37338 (8)−0.0187 (2)0.0230 (3)
C30.33449 (17)0.37599 (8)0.0304 (2)0.0213 (3)
C40.35322 (16)0.37802 (8)0.2659 (2)0.0203 (3)
C50.16502 (18)0.37655 (8)−0.1101 (2)0.0257 (3)
C60.0205 (2)0.37657 (10)−0.2191 (2)0.0326 (3)
C70.7461 (2)0.30471 (8)0.1866 (3)0.0286 (3)
H7A0.66830.26410.17190.043*
H7B0.83070.30280.32280.043*
H7C0.80770.30400.07500.043*
C80.7560 (2)0.43669 (9)0.1864 (3)0.0298 (3)
H8A0.68490.47920.17630.045*
H8B0.81460.43600.07190.045*
H8C0.84330.43630.32060.045*
C90.2700 (2)0.31455 (9)0.3439 (2)0.0302 (4)
H9A0.31920.27140.30170.045*
H9B0.14410.31530.28330.045*
H9C0.29330.31620.49670.045*
C100.2884 (2)0.44689 (9)0.3368 (3)0.0315 (4)
H10A0.34870.48620.28980.047*
H10B0.31190.44750.48970.047*
H10C0.16290.45120.27640.047*
H2A0.503 (2)0.3735 (9)−0.161 (3)0.029 (4)*
H6A−0.098 (3)0.3781 (10)−0.308 (3)0.045 (6)*
U11U22U33U12U13U23
O10.0254 (5)0.0447 (6)0.0133 (4)0.0007 (5)−0.0005 (3)−0.0003 (5)
N10.0177 (5)0.0338 (6)0.0135 (5)0.0002 (5)0.0025 (4)0.0002 (5)
C10.0185 (5)0.0273 (7)0.0171 (5)−0.0002 (5)0.0050 (4)0.0001 (6)
C20.0253 (6)0.0288 (7)0.0142 (5)−0.0006 (6)0.0039 (4)−0.0005 (5)
C30.0216 (6)0.0239 (6)0.0159 (5)−0.0007 (5)−0.0001 (4)0.0000 (5)
C40.0162 (5)0.0274 (7)0.0165 (5)0.0000 (5)0.0027 (4)−0.0013 (5)
C50.0252 (6)0.0334 (8)0.0176 (6)−0.0015 (6)0.0034 (5)−0.0006 (6)
C60.0262 (7)0.0466 (10)0.0229 (7)−0.0002 (7)0.0019 (5)−0.0017 (7)
C70.0248 (7)0.0312 (8)0.0298 (8)0.0050 (6)0.0065 (6)−0.0030 (6)
C80.0288 (7)0.0351 (9)0.0260 (8)−0.0081 (6)0.0081 (6)0.0007 (6)
C90.0278 (7)0.0388 (9)0.0241 (8)−0.0073 (6)0.0065 (6)0.0054 (6)
C100.0292 (8)0.0379 (9)0.0266 (8)0.0085 (7)0.0053 (6)−0.0071 (7)
O1—N11.2752 (14)C6—H6A0.97 (2)
N1—C41.4787 (16)C7—H7A0.9800
N1—C11.4815 (17)C7—H7B0.9800
C1—C21.5079 (18)C7—H7C0.9800
C1—C71.526 (2)C8—H8A0.9800
C1—C81.527 (2)C8—H8B0.9800
C2—C31.336 (2)C8—H8C0.9800
C2—H2A0.975 (19)C9—H9A0.9800
C3—C51.4317 (18)C9—H9B0.9800
C3—C41.5248 (18)C9—H9C0.9800
C4—C101.525 (2)C10—H10A0.9800
C4—C91.527 (2)C10—H10B0.9800
C5—C61.193 (2)C10—H10C0.9800
O1—N1—C4122.07 (11)C1—C7—H7B109.5
O1—N1—C1122.43 (11)H7A—C7—H7B109.5
C4—N1—C1115.50 (10)C1—C7—H7C109.5
N1—C1—C299.88 (10)H7A—C7—H7C109.5
N1—C1—C7110.43 (12)H7B—C7—H7C109.5
C2—C1—C7112.54 (12)C1—C8—H8A109.5
N1—C1—C8109.81 (12)C1—C8—H8B109.5
C2—C1—C8112.67 (12)H8A—C8—H8B109.5
C7—C1—C8111.00 (12)C1—C8—H8C109.5
C3—C2—C1112.74 (12)H8A—C8—H8C109.5
C3—C2—H2A124.7 (11)H8B—C8—H8C109.5
C1—C2—H2A122.5 (11)C4—C9—H9A109.5
C2—C3—C5127.55 (13)C4—C9—H9B109.5
C2—C3—C4112.53 (11)H9A—C9—H9B109.5
C5—C3—C4119.92 (12)C4—C9—H9C109.5
N1—C4—C399.34 (10)H9A—C9—H9C109.5
N1—C4—C10109.88 (12)H9B—C9—H9C109.5
C3—C4—C10112.29 (12)C4—C10—H10A109.5
N1—C4—C9110.37 (12)C4—C10—H10B109.5
C3—C4—C9112.47 (12)H10A—C10—H10B109.5
C10—C4—C9111.82 (13)C4—C10—H10C109.5
C6—C5—C3176.86 (16)H10A—C10—H10C109.5
C5—C6—H6A178.2 (12)H10B—C10—H10C109.5
C1—C7—H7A109.5
O1—N1—C1—C2179.84 (13)C1—N1—C4—C31.46 (17)
C4—N1—C1—C2−1.06 (17)O1—N1—C4—C1062.65 (18)
O1—N1—C1—C761.15 (17)C1—N1—C4—C10−116.46 (14)
C4—N1—C1—C7−119.74 (13)O1—N1—C4—C9−61.12 (18)
O1—N1—C1—C8−61.57 (17)C1—N1—C4—C9119.77 (13)
C4—N1—C1—C8117.54 (13)C2—C3—C4—N1−1.34 (17)
N1—C1—C2—C30.11 (17)C5—C3—C4—N1178.28 (14)
C7—C1—C2—C3117.23 (15)C2—C3—C4—C10114.75 (15)
C8—C1—C2—C3−116.35 (15)C5—C3—C4—C10−65.63 (18)
C1—C2—C3—C5−178.76 (15)C2—C3—C4—C9−118.07 (15)
C1—C2—C3—C40.82 (19)C5—C3—C4—C961.54 (18)
O1—N1—C4—C3−179.43 (13)
D—H···AD—HH···AD···AD—H···A
C2—H2A···O1i0.975 (19)2.441 (18)3.3907 (18)164.6 (14)
C6—H6A···O1ii0.98 (2)2.20 (2)3.174 (2)171.2 (17)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2A⋯O1i0.975 (19)2.441 (18)3.3907 (18)164.6 (14)
C6—H6A⋯O1ii0.98 (2)2.20 (2)3.174 (2)171.2 (17)

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Spin labeling of oligonucleotides with the nitroxide TPA and use of PELDOR, a pulse EPR method, to measure intramolecular distances.

Authors:  Olav Schiemann; Nelly Piton; Jörn Plackmeyer; Bela E Bode; Thomas F Prisner; Joachim W Engels
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

3.  Base-specific spin-labeling of RNA for structure determination.

Authors:  Nelly Piton; Yuguang Mu; Gerhard Stock; Thomas F Prisner; Olav Schiemann; Joachim W Engels
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

  3 in total

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