Literature DB >> 21583543

3-Hydr-oxy-3-(methoxy-carbon-yl)penta-nedioic acid.

Lawal Aliyu, Nornisah Mohamed, Ching Kheng Quah, Hoong-Kun Fun.   

Abstract

In the title compound, C(7)H(10)O(7), the aliphatic chain is approximately planar [maximum deviation = 0.013 (1) Å] and makes a dihedral angle of 78.75 (7)° with the methoxy-carbonyl group. In the crystal, mol-ecules are linked via inter-molecular O-H⋯O and C-H⋯O hydrogen bonds into sheets parallel to (100). In the sheet, O-H⋯O hydrogen bonds generate R(2) (2)(9) and R(2) (2)(8) ring motifs.

Entities:  

Year:  2009        PMID: 21583543      PMCID: PMC2977126          DOI: 10.1107/S1600536809025598

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C7H10O7 M = 206.15 Orthorhombic, a = 12.7110 (4) Å b = 5.8323 (2) Å c = 23.8844 (7) Å V = 1770.65 (10) Å3 Z = 8 Mo Kα radiation μ = 0.14 mm−1 T = 100 K 0.54 × 0.18 × 0.11 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.927, T max = 0.985 54585 measured reflections 4404 independent reflections 4059 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.107 S = 1.12 4404 reflections 167 parameters All H-atom parameters refined Δρmax = 0.56 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809025598/ci2844sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809025598/ci2844Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H10O7F(000) = 864
Mr = 206.15Dx = 1.547 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 9850 reflections
a = 12.7110 (4) Åθ = 3.2–36.7°
b = 5.8323 (2) ŵ = 0.14 mm1
c = 23.8844 (7) ÅT = 100 K
V = 1770.65 (10) Å3Plate, colourless
Z = 80.54 × 0.18 × 0.11 mm
Bruker SMART APEXII CCD area-detector diffractometer4404 independent reflections
Radiation source: fine-focus sealed tube4059 reflections with I > 2σ(I)
graphiteRint = 0.030
φ and ω scansθmax = 36.7°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −21→21
Tmin = 0.927, Tmax = 0.985k = −8→9
54585 measured reflectionsl = −39→39
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.107All H-atom parameters refined
S = 1.12w = 1/[σ2(Fo2) + (0.0517P)2 + 0.4849P] where P = (Fo2 + 2Fc2)/3
4404 reflections(Δ/σ)max = 0.001
167 parametersΔρmax = 0.56 e Å3
0 restraintsΔρmin = −0.24 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.02576 (5)0.61486 (11)0.25826 (2)0.01728 (11)
O20.17885 (5)0.80419 (12)0.24936 (3)0.01938 (12)
O30.08405 (4)0.23143 (9)0.34206 (2)0.01268 (10)
O40.12975 (5)0.07178 (11)0.47512 (3)0.01837 (12)
O5−0.02721 (4)0.24507 (10)0.46792 (2)0.01487 (11)
O6−0.11179 (4)0.42068 (10)0.35333 (2)0.01375 (10)
O7−0.04401 (4)0.74583 (10)0.38809 (3)0.01586 (11)
C10.10969 (5)0.67852 (13)0.27732 (3)0.01260 (11)
C20.14594 (5)0.62879 (13)0.33592 (3)0.01235 (11)
C30.07801 (5)0.45077 (12)0.36661 (3)0.01026 (11)
C40.12280 (5)0.42501 (12)0.42612 (3)0.01211 (11)
C50.06767 (5)0.23834 (12)0.45814 (3)0.01218 (11)
C6−0.03676 (5)0.53355 (12)0.36864 (3)0.01112 (11)
C7−0.14757 (6)0.85003 (15)0.38333 (4)0.02113 (15)
H2A0.1457 (11)0.771 (2)0.3557 (6)0.020 (3)*
H2B0.2200 (10)0.580 (2)0.3349 (6)0.021 (3)*
H4A0.1116 (10)0.567 (2)0.4477 (6)0.016 (3)*
H4B0.1959 (10)0.390 (2)0.4241 (5)0.015 (3)*
H7A−0.1957 (12)0.773 (3)0.4079 (7)0.033 (4)*
H7B−0.1406 (11)1.010 (3)0.3934 (6)0.023 (3)*
H7C−0.1741 (14)0.827 (3)0.3455 (7)0.039 (4)*
H1O20.1539 (13)0.834 (3)0.2177 (7)0.038 (4)*
H1O30.0466 (12)0.225 (3)0.3117 (7)0.032 (4)*
H1O40.0934 (14)−0.032 (4)0.4959 (8)0.046 (5)*
U11U22U33U12U13U23
O10.0175 (2)0.0178 (3)0.0166 (2)−0.00488 (19)−0.00472 (18)0.00421 (19)
O20.0153 (2)0.0256 (3)0.0172 (3)−0.0040 (2)−0.00089 (18)0.0107 (2)
O30.0149 (2)0.0102 (2)0.0130 (2)0.00161 (16)−0.00136 (16)−0.00159 (16)
O40.0142 (2)0.0180 (3)0.0229 (3)0.00341 (19)0.00330 (19)0.0089 (2)
O50.0123 (2)0.0159 (2)0.0164 (2)0.00103 (17)0.00198 (16)0.00301 (18)
O60.0111 (2)0.0156 (2)0.0145 (2)−0.00290 (17)−0.00018 (16)−0.00210 (17)
O70.0116 (2)0.0115 (2)0.0245 (3)0.00166 (17)−0.00251 (18)−0.00385 (19)
C10.0128 (2)0.0115 (3)0.0135 (3)0.0001 (2)0.00038 (19)0.0027 (2)
C20.0111 (2)0.0132 (3)0.0128 (3)−0.0015 (2)−0.00051 (19)0.0029 (2)
C30.0101 (2)0.0097 (2)0.0110 (2)−0.00015 (19)−0.00016 (18)0.00032 (19)
C40.0120 (2)0.0133 (3)0.0110 (3)−0.0015 (2)−0.00097 (19)0.0013 (2)
C50.0129 (2)0.0136 (3)0.0100 (2)0.0004 (2)0.00019 (18)0.0006 (2)
C60.0110 (2)0.0106 (3)0.0118 (3)−0.00047 (19)−0.00006 (18)0.0002 (2)
C70.0146 (3)0.0169 (3)0.0319 (4)0.0051 (3)−0.0034 (3)−0.0041 (3)
O1—C11.2179 (9)C2—C31.5365 (9)
O2—C11.3251 (9)C2—H2A0.956 (14)
O2—H1O20.838 (17)C2—H2B0.984 (13)
O3—C31.4094 (9)C3—C61.5373 (9)
O3—H1O30.869 (16)C3—C41.5386 (9)
O4—C51.3156 (9)C4—C51.5037 (10)
O4—H1O40.91 (2)C4—H4A0.984 (13)
O5—C51.2290 (9)C4—H4B0.953 (13)
O6—C61.2152 (8)C7—H7A0.960 (16)
O7—C61.3256 (9)C7—H7B0.966 (15)
O7—C71.4543 (10)C7—H7C0.973 (17)
C1—C21.5020 (10)
C1—O2—H1O2108.5 (12)C5—C4—C3111.60 (6)
C3—O3—H1O3111.0 (11)C5—C4—H4A106.0 (8)
C5—O4—H1O4110.8 (12)C3—C4—H4A110.4 (8)
C6—O7—C7115.21 (6)C5—C4—H4B108.9 (8)
O1—C1—O2124.15 (7)C3—C4—H4B109.6 (8)
O1—C1—C2123.93 (6)H4A—C4—H4B110.4 (11)
O2—C1—C2111.90 (6)O5—C5—O4123.61 (7)
C1—C2—C3113.75 (6)O5—C5—C4122.06 (6)
C1—C2—H2A107.0 (8)O4—C5—C4114.32 (6)
C3—C2—H2A110.5 (8)O6—C6—O7123.84 (6)
C1—C2—H2B109.1 (8)O6—C6—C3124.41 (6)
C3—C2—H2B110.7 (8)O7—C6—C3111.74 (6)
H2A—C2—H2B105.5 (12)O7—C7—H7A109.5 (10)
O3—C3—C2112.60 (5)O7—C7—H7B107.5 (8)
O3—C3—C6110.48 (5)H7A—C7—H7B111.0 (13)
C2—C3—C6109.64 (5)O7—C7—H7C109.2 (10)
O3—C3—C4106.00 (5)H7A—C7—H7C106.4 (14)
C2—C3—C4107.38 (5)H7B—C7—H7C113.3 (13)
C6—C3—C4110.65 (5)
O1—C1—C2—C311.29 (11)C3—C4—C5—O4120.28 (7)
O2—C1—C2—C3−170.15 (6)C7—O7—C6—O6−7.76 (11)
C1—C2—C3—O365.49 (8)C7—O7—C6—C3170.92 (7)
C1—C2—C3—C6−57.93 (8)O3—C3—C6—O62.90 (9)
C1—C2—C3—C4−178.20 (6)C2—C3—C6—O6127.56 (7)
O3—C3—C4—C5−54.29 (7)C4—C3—C6—O6−114.18 (8)
C2—C3—C4—C5−174.86 (6)O3—C3—C6—O7−175.77 (6)
C6—C3—C4—C565.51 (7)C2—C3—C6—O7−51.11 (8)
C3—C4—C5—O5−60.67 (9)C4—C3—C6—O767.15 (7)
D—H···AD—HH···AD···AD—H···A
O2—H1O2···O6i0.84 (2)1.85 (2)2.6838 (8)173 (2)
O3—H1O3···O1ii0.87 (2)2.01 (2)2.8549 (8)163 (2)
O4—H1O4···O5iii0.91 (2)1.73 (2)2.6391 (9)176 (2)
C4—H4A···O5iv0.99 (1)2.53 (1)3.4035 (9)147 (1)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H1O2⋯O6i0.84 (2)1.85 (2)2.6838 (8)173 (2)
O3—H1O3⋯O1ii0.87 (2)2.01 (2)2.8549 (8)163 (2)
O4—H1O4⋯O5iii0.91 (2)1.73 (2)2.6391 (9)176 (2)
C4—H4A⋯O5iv0.99 (1)2.53 (1)3.4035 (9)147 (1)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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