Literature DB >> 21583497

2-Hydroxy-benzoic acid-purin-6-amine (3/1).

Lian-Cai Du, Wu-Lan Zeng, Xue-Ying Liu, Fang-Fang Jian.   

Abstract

In the title 3:1 adduct, 3C(7)H(6)O(3)·C(5)H(5)N(5), an intra-molecular O-H⋯O hydrogen bond occurs in each of the three 2-hydroxy-benzoic acid mol-ecules. In the crystal, the components are linked by N-H⋯O and O-H⋯N hydrogen bonds.

Entities:  

Year:  2009        PMID: 21583497      PMCID: PMC2977431          DOI: 10.1107/S1600536809025240

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For medicinal background, see: Forsythe & Ennis (1999 ▶).

Experimental

Crystal data

3C7H6O3·C5H5N5 M = 549.49 Monoclinic, a = 10.998 (2) Å b = 10.053 (2) Å c = 23.490 (7) Å β = 106.98 (3)° V = 2483.9 (10) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 293 K 0.38 × 0.22 × 0.14 mm

Data collection

Siemens SMART CCD diffractometer Absorption correction: none 22329 measured reflections 5680 independent reflections 4872 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.116 S = 1.06 5680 reflections 361 parameters H-atom parameters constrained Δρmax = 0.83 e Å−3 Δρmin = −0.30 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809025240/hb5001sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809025240/hb5001Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
3C7H6O3·C5H5N5F(000) = 1144
Mr = 549.49Dx = 1.469 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5680 reflections
a = 10.998 (2) Åθ = 3.0–27.5°
b = 10.053 (2) ŵ = 0.11 mm1
c = 23.490 (7) ÅT = 293 K
β = 106.98 (3)°Block, colourless
V = 2483.9 (10) Å30.38 × 0.22 × 0.14 mm
Z = 4
Siemens SMART CCD diffractometer4872 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.020
graphiteθmax = 27.5°, θmin = 3.0°
ω scansh = −14→14
22329 measured reflectionsk = −13→12
5680 independent reflectionsl = −30→30
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0624P)2 + 1.1319P] where P = (Fo2 + 2Fc2)/3
5680 reflections(Δ/σ)max < 0.001
361 parametersΔρmax = 0.83 e Å3
0 restraintsΔρmin = −0.30 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.58987 (11)0.54268 (12)0.10882 (5)0.0328 (3)
H1D0.64640.50350.09930.049*
O20.70858 (10)0.59642 (10)−0.04308 (4)0.0222 (2)
H2C0.76630.5468−0.04510.033*
O30.73581 (9)0.48786 (10)0.04287 (4)0.0216 (2)
C10.42191 (15)0.83244 (16)−0.01407 (8)0.0309 (3)
H1C0.38320.8986−0.04100.037*
C20.38415 (14)0.81020 (16)0.03701 (7)0.0290 (3)
H2B0.32000.86210.04400.035*
C30.44049 (14)0.71264 (16)0.07710 (7)0.0258 (3)
H3B0.41360.69850.11060.031*
C40.53780 (13)0.63482 (14)0.06763 (6)0.0207 (3)
C50.57687 (13)0.65547 (14)0.01619 (6)0.0190 (3)
C60.51750 (14)0.75499 (15)−0.02417 (7)0.0254 (3)
H6A0.54270.7691−0.05820.030*
C70.67994 (13)0.57290 (14)0.00646 (6)0.0184 (3)
O40.24665 (11)0.29192 (11)0.20033 (5)0.0290 (2)
H4B0.20490.26500.22170.043*
O50.18452 (10)0.26468 (11)0.29882 (5)0.0279 (2)
O60.27892 (10)0.39746 (11)0.37517 (4)0.0254 (2)
H6B0.22550.36460.38910.038*
C80.54365 (13)0.53292 (16)0.29552 (7)0.0242 (3)
H8A0.61110.58620.31640.029*
C90.52558 (14)0.50464 (17)0.23539 (7)0.0279 (3)
H9A0.58090.54050.21620.033*
C100.42685 (15)0.42432 (17)0.20407 (7)0.0277 (3)
H10A0.41610.40640.16410.033*
C110.34292 (13)0.36986 (15)0.23260 (6)0.0222 (3)
C120.35880 (13)0.39957 (14)0.29283 (6)0.0189 (3)
C130.46011 (13)0.48074 (14)0.32360 (6)0.0202 (3)
H13A0.47130.49980.36350.024*
C140.26650 (13)0.34705 (14)0.32213 (6)0.0199 (3)
N10.08652 (11)0.72297 (12)−0.04856 (5)0.0205 (2)
H1A0.07190.7725−0.07970.025*
H1B0.14240.6607−0.04290.025*
N2−0.06434 (11)0.84210 (12)−0.01967 (5)0.0193 (2)
N3−0.12090 (11)0.80213 (12)0.06983 (5)0.0208 (2)
N40.11815 (11)0.56210 (12)0.06827 (5)0.0194 (2)
N50.00044 (11)0.61900 (12)0.12747 (5)0.0200 (2)
H5A−0.02960.61760.15740.024*
C220.02299 (12)0.74279 (14)−0.00930 (6)0.0173 (3)
C23−0.12982 (13)0.86541 (15)0.01934 (6)0.0218 (3)
H23A−0.18860.93440.00980.026*
C24−0.03382 (12)0.70387 (14)0.08015 (6)0.0176 (3)
C250.03992 (12)0.66798 (14)0.04351 (5)0.0169 (3)
C260.09105 (13)0.53725 (15)0.11826 (6)0.0210 (3)
H26A0.13010.47030.14460.025*
O7−0.00080 (10)1.02622 (10)0.25745 (4)0.0227 (2)
H7A−0.02141.07090.22690.034*
O80.13258 (9)0.99434 (10)0.10831 (4)0.0209 (2)
H8B0.10221.04830.08180.031*
O90.00284 (10)1.09961 (10)0.15130 (4)0.0226 (2)
C150.13464 (15)0.84945 (15)0.30203 (6)0.0243 (3)
H15A0.10730.85840.33570.029*
C160.22228 (14)0.75286 (15)0.30017 (7)0.0258 (3)
H16A0.25390.69730.33280.031*
C170.26428 (14)0.73742 (15)0.24987 (7)0.0238 (3)
H17A0.32250.67120.24860.029*
C180.21830 (13)0.82174 (14)0.20201 (6)0.0193 (3)
H18A0.24670.81240.16860.023*
C190.12974 (12)0.92108 (13)0.20291 (6)0.0161 (3)
C200.08674 (13)0.93391 (14)0.25345 (6)0.0182 (3)
C210.08283 (12)1.01232 (13)0.15196 (6)0.0170 (3)
U11U22U33U12U13U23
O10.0346 (6)0.0406 (7)0.0266 (5)0.0103 (5)0.0144 (5)0.0040 (5)
O20.0233 (5)0.0252 (5)0.0210 (5)0.0045 (4)0.0110 (4)0.0023 (4)
O30.0221 (5)0.0234 (5)0.0204 (5)0.0038 (4)0.0081 (4)0.0015 (4)
C10.0284 (8)0.0248 (8)0.0379 (9)0.0063 (6)0.0070 (7)0.0024 (6)
C20.0219 (7)0.0259 (8)0.0389 (9)0.0027 (6)0.0085 (6)−0.0100 (6)
C30.0223 (7)0.0301 (8)0.0268 (7)−0.0025 (6)0.0103 (6)−0.0099 (6)
C40.0198 (6)0.0216 (7)0.0199 (6)−0.0024 (5)0.0047 (5)−0.0045 (5)
C50.0177 (6)0.0183 (6)0.0210 (6)−0.0020 (5)0.0058 (5)−0.0039 (5)
C60.0250 (7)0.0234 (7)0.0279 (7)0.0016 (6)0.0081 (6)0.0018 (6)
C70.0173 (6)0.0192 (6)0.0188 (6)−0.0034 (5)0.0052 (5)−0.0031 (5)
O40.0315 (6)0.0307 (6)0.0236 (5)0.0018 (5)0.0063 (4)−0.0038 (4)
O50.0272 (5)0.0261 (6)0.0307 (6)−0.0055 (5)0.0092 (4)0.0005 (4)
O60.0258 (5)0.0320 (6)0.0235 (5)−0.0064 (4)0.0149 (4)0.0004 (4)
C80.0177 (6)0.0276 (8)0.0283 (7)0.0040 (6)0.0083 (5)0.0080 (6)
C90.0233 (7)0.0367 (9)0.0288 (7)0.0096 (6)0.0156 (6)0.0135 (6)
C100.0307 (8)0.0361 (9)0.0196 (7)0.0123 (7)0.0123 (6)0.0061 (6)
C110.0229 (7)0.0225 (7)0.0209 (6)0.0081 (6)0.0059 (5)0.0021 (5)
C120.0202 (6)0.0193 (7)0.0187 (6)0.0060 (5)0.0082 (5)0.0048 (5)
C130.0200 (6)0.0219 (7)0.0194 (6)0.0046 (5)0.0069 (5)0.0051 (5)
C140.0196 (6)0.0189 (6)0.0219 (6)0.0031 (5)0.0072 (5)0.0047 (5)
N10.0242 (6)0.0239 (6)0.0162 (5)0.0061 (5)0.0101 (4)0.0050 (4)
N20.0218 (5)0.0202 (6)0.0172 (5)0.0020 (5)0.0074 (4)0.0020 (4)
N30.0220 (6)0.0245 (6)0.0181 (5)0.0007 (5)0.0096 (4)−0.0012 (4)
N40.0188 (5)0.0209 (6)0.0183 (5)0.0004 (5)0.0052 (4)0.0019 (4)
N50.0215 (6)0.0271 (6)0.0128 (5)−0.0049 (5)0.0075 (4)−0.0006 (4)
C220.0174 (6)0.0189 (6)0.0157 (6)−0.0017 (5)0.0048 (5)−0.0007 (5)
C230.0229 (7)0.0232 (7)0.0205 (6)0.0025 (6)0.0081 (5)0.0008 (5)
C240.0173 (6)0.0208 (7)0.0149 (6)−0.0048 (5)0.0051 (5)−0.0019 (5)
C250.0177 (6)0.0198 (6)0.0138 (6)−0.0024 (5)0.0054 (5)−0.0006 (5)
C260.0201 (6)0.0238 (7)0.0174 (6)−0.0022 (6)0.0029 (5)0.0031 (5)
O70.0308 (5)0.0222 (5)0.0178 (5)0.0063 (4)0.0114 (4)0.0022 (4)
O80.0247 (5)0.0238 (5)0.0165 (4)0.0076 (4)0.0094 (4)0.0052 (4)
O90.0278 (5)0.0235 (5)0.0190 (5)0.0097 (4)0.0107 (4)0.0047 (4)
C150.0324 (7)0.0245 (7)0.0169 (6)−0.0010 (6)0.0086 (6)0.0034 (5)
C160.0290 (7)0.0239 (7)0.0215 (7)−0.0003 (6)0.0025 (6)0.0089 (5)
C170.0208 (6)0.0202 (7)0.0288 (7)0.0025 (6)0.0048 (5)0.0045 (6)
C180.0181 (6)0.0192 (7)0.0211 (6)−0.0005 (5)0.0065 (5)0.0009 (5)
C190.0164 (6)0.0162 (6)0.0152 (6)−0.0015 (5)0.0037 (5)0.0006 (5)
C200.0204 (6)0.0169 (6)0.0176 (6)−0.0019 (5)0.0059 (5)−0.0010 (5)
C210.0180 (6)0.0177 (6)0.0157 (6)−0.0009 (5)0.0055 (5)−0.0005 (5)
O1—C41.3411 (18)N1—C221.3247 (17)
O1—H1D0.8201N1—H1A0.8601
O2—C71.3128 (17)N1—H1B0.8599
O2—H2C0.8200N2—C231.3411 (18)
O3—C71.2381 (17)N2—C221.3572 (18)
C1—C61.383 (2)N3—C231.3241 (18)
C1—C21.398 (2)N3—C241.3476 (19)
C1—H1C0.9300N4—C261.3169 (18)
C2—C31.375 (2)N4—C251.3854 (18)
C2—H2B0.9300N5—C261.3571 (19)
C3—C41.395 (2)N5—C241.3642 (18)
C3—H3B0.9300N5—H5A0.8601
C4—C51.4110 (19)C22—C251.4155 (18)
C5—C61.402 (2)C23—H23A0.9300
C5—C71.4756 (19)C24—C251.3916 (18)
C6—H6A0.9300C26—H26A0.9300
O4—C111.3568 (19)O7—C201.3600 (17)
O4—H4B0.8199O7—H7A0.8201
O5—C141.2289 (18)O8—C211.3082 (16)
O6—C141.3146 (17)O8—H8B0.8200
O6—H6B0.8203O9—C211.2394 (17)
C8—C131.381 (2)C15—C161.378 (2)
C8—C91.397 (2)C15—C201.3964 (19)
C8—H8A0.9300C15—H15A0.9300
C9—C101.380 (2)C16—C171.397 (2)
C9—H9A0.9300C16—H16A0.9300
C10—C111.401 (2)C17—C181.381 (2)
C10—H10A0.9300C17—H17A0.9300
C11—C121.4059 (19)C18—C191.3995 (19)
C12—C131.400 (2)C18—H18A0.9300
C12—C141.4803 (19)C19—C201.4062 (18)
C13—H13A0.9300C19—C211.4762 (18)
C4—O1—H1D109.5C22—N1—H1B120.1
C7—O2—H2C109.5H1A—N1—H1B120.0
C6—C1—C2119.24 (15)C23—N2—C22119.92 (12)
C6—C1—H1C120.4C23—N3—C24112.09 (12)
C2—C1—H1C120.4C26—N4—C25104.22 (11)
C3—C2—C1120.96 (14)C26—N5—C24106.84 (11)
C3—C2—H2B119.5C26—N5—H5A126.6
C1—C2—H2B119.5C24—N5—H5A126.6
C2—C3—C4120.26 (14)N1—C22—N2118.36 (12)
C2—C3—H3B119.9N1—C22—C25124.68 (13)
C4—C3—H3B119.9N2—C22—C25116.96 (12)
O1—C4—C3117.27 (13)N3—C23—N2127.88 (13)
O1—C4—C5123.15 (13)N3—C23—H23A116.1
C3—C4—C5119.58 (14)N2—C23—H23A116.1
C6—C5—C4119.08 (13)N3—C24—N5128.14 (12)
C6—C5—C7121.60 (13)N3—C24—C25126.21 (12)
C4—C5—C7119.32 (13)N5—C24—C25105.65 (12)
C1—C6—C5120.86 (15)N4—C25—C24110.01 (11)
C1—C6—H6A119.6N4—C25—C22133.06 (12)
C5—C6—H6A119.6C24—C25—C22116.93 (12)
O3—C7—O2122.51 (13)N4—C26—N5113.29 (12)
O3—C7—C5122.02 (12)N4—C26—H26A123.4
O2—C7—C5115.47 (12)N5—C26—H26A123.4
C11—O4—H4B109.5C20—O7—H7A109.5
C14—O6—H6B109.5C21—O8—H8B109.5
C13—C8—C9119.17 (15)C16—C15—C20120.21 (13)
C13—C8—H8A120.4C16—C15—H15A119.9
C9—C8—H8A120.4C20—C15—H15A119.9
C10—C9—C8121.02 (14)C15—C16—C17120.81 (13)
C10—C9—H9A119.5C15—C16—H16A119.6
C8—C9—H9A119.5C17—C16—H16A119.6
C9—C10—C11119.96 (14)C18—C17—C16119.17 (14)
C9—C10—H10A120.0C18—C17—H17A120.4
C11—C10—H10A120.0C16—C17—H17A120.4
O4—C11—C10118.31 (13)C17—C18—C19121.12 (13)
O4—C11—C12122.16 (13)C17—C18—H18A119.4
C10—C11—C12119.52 (14)C19—C18—H18A119.4
C13—C12—C11119.32 (13)C18—C19—C20119.04 (12)
C13—C12—C14121.21 (12)C18—C19—C21120.74 (12)
C11—C12—C14119.45 (13)C20—C19—C21120.22 (12)
C8—C13—C12120.99 (13)O7—C20—C15117.65 (12)
C8—C13—H13A119.5O7—C20—C19122.71 (12)
C12—C13—H13A119.5C15—C20—C19119.64 (13)
O5—C14—O6122.80 (13)O9—C21—O8123.07 (12)
O5—C14—C12123.13 (13)O9—C21—C19121.93 (12)
O6—C14—C12114.06 (12)O8—C21—C19114.99 (12)
C22—N1—H1A119.9
C6—C1—C2—C3−0.1 (2)C22—N2—C23—N30.3 (2)
C1—C2—C3—C40.7 (2)C23—N3—C24—N5179.88 (13)
C2—C3—C4—O1179.11 (14)C23—N3—C24—C25−0.5 (2)
C2—C3—C4—C5−0.9 (2)C26—N5—C24—N3179.76 (13)
O1—C4—C5—C6−179.48 (13)C26—N5—C24—C250.09 (14)
C3—C4—C5—C60.5 (2)C26—N4—C25—C24−0.25 (15)
O1—C4—C5—C7−0.1 (2)C26—N4—C25—C22179.27 (15)
C3—C4—C5—C7179.94 (12)N3—C24—C25—N4−179.58 (12)
C2—C1—C6—C5−0.3 (2)N5—C24—C25—N40.10 (15)
C4—C5—C6—C10.1 (2)N3—C24—C25—C220.8 (2)
C7—C5—C6—C1−179.32 (14)N5—C24—C25—C22−179.51 (11)
C6—C5—C7—O3177.52 (13)N1—C22—C25—N4−0.4 (2)
C4—C5—C7—O3−1.9 (2)N2—C22—C25—N4180.00 (13)
C6—C5—C7—O2−2.09 (19)N1—C22—C25—C24179.08 (13)
C4—C5—C7—O2178.54 (12)N2—C22—C25—C24−0.50 (18)
C13—C8—C9—C10−0.8 (2)C25—N4—C26—N50.31 (15)
C8—C9—C10—C110.0 (2)C24—N5—C26—N4−0.26 (16)
C9—C10—C11—O4179.69 (13)C20—C15—C16—C17−0.2 (2)
C9—C10—C11—C121.1 (2)C15—C16—C17—C181.0 (2)
O4—C11—C12—C13−179.95 (13)C16—C17—C18—C19−0.6 (2)
C10—C11—C12—C13−1.4 (2)C17—C18—C19—C20−0.4 (2)
O4—C11—C12—C14−1.3 (2)C17—C18—C19—C21178.90 (13)
C10—C11—C12—C14177.17 (13)C16—C15—C20—O7179.13 (13)
C9—C8—C13—C120.5 (2)C16—C15—C20—C19−0.9 (2)
C11—C12—C13—C80.6 (2)C18—C19—C20—O7−178.81 (12)
C14—C12—C13—C8−177.94 (13)C21—C19—C20—O71.8 (2)
C13—C12—C14—O5−172.14 (13)C18—C19—C20—C151.2 (2)
C11—C12—C14—O59.3 (2)C21—C19—C20—C15−178.15 (13)
C13—C12—C14—O68.60 (19)C18—C19—C21—O9178.77 (13)
C11—C12—C14—O6−169.98 (12)C20—C19—C21—O9−1.9 (2)
C23—N2—C22—N1−179.60 (13)C18—C19—C21—O8−1.68 (18)
C23—N2—C22—C250.01 (19)C20—C19—C21—O8177.67 (12)
C24—N3—C23—N2−0.1 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1D···O30.821.872.5946 (17)146
O4—H4B···O50.821.892.6111 (18)146
O7—H7A···O90.821.892.6118 (15)146
O2—H2C···N4i0.821.872.6795 (18)167
O6—H6B···N3ii0.821.822.6305 (18)172
O8—H8B···N2iii0.821.782.5864 (17)168
N1—H1A···O9iii0.862.092.9302 (17)167
N1—H1B···O3i0.862.012.8593 (18)171
N5—H5A···O7ii0.862.142.8585 (17)141
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1D⋯O30.821.872.5946 (17)146
O4—H4B⋯O50.821.892.6111 (18)146
O7—H7A⋯O90.821.892.6118 (15)146
O2—H2C⋯N4i0.821.872.6795 (18)167
O6—H6B⋯N3ii0.821.822.6305 (18)172
O8—H8B⋯N2iii0.821.782.5864 (17)168
N1—H1A⋯O9iii0.862.092.9302 (17)167
N1—H1B⋯O3i0.862.012.8593 (18)171
N5—H5A⋯O7ii0.862.142.8585 (17)141

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Adenosine, mast cells and asthma.

Authors:  P Forsythe; M Ennis
Journal:  Inflamm Res       Date:  1999-06       Impact factor: 4.575

  2 in total

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