Literature DB >> 21583490

Biphenyl-4,4'-diyl bis-(2,2,5,5-tetra-methyl-1-oxyl-3-pyrroline-3-carboxyl-ate).

Dominik Margraf, Denise Schuetz, Thomas F Prisner, Jan W Bats.   

Abstract

In the title compound, C(30)H(34)N(2)O(6), the complete molecule is generated by a crystallographic 2/m symmetry operation. The 1-oxyl-3-pyrroline-3-carboxyl-ate group lies on a mirror plane. The dihedral angle between the ring planes of the biphenyl fragment is constrained by symmetry to be zero, resulting in rather short intramolecular H⋯H contact distances of 2.02 Å. In the crystal, molecules are connected along the a-axis direction by very weak intermolecular methyl-phenyl C-H⋯π interactions. The C-H bond is not directed to the center of the benzene ring, but mainly to one C atom [C-H⋯C(x - 1, y, z): H⋯C = 2.91 Å and C-H⋯C = 143°].

Entities:  

Year:  2009        PMID: 21583490      PMCID: PMC2977196          DOI: 10.1107/S1600536809024659

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation of the title compound see: Weber et al. (2002 ▶). For the crystal structures of related compounds see: Boeyens & Kruger (1970 ▶); Bolte (2006 ▶); Duskova et al. (2001 ▶); Godt et al., 2000 ▶; Papoutsakis et al. (1999 ▶); Wiley et al., 1989 ▶ and Wiley et al., 1991 ▶.

Experimental

Crystal data

C30H34N2O6 M = 518.59 Monoclinic, a = 6.931 (2) Å b = 9.461 (3) Å c = 20.805 (4) Å β = 96.059 (14)° V = 1356.6 (6) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 169 K 0.44 × 0.30 × 0.10 mm

Data collection

Siemens SMART 1K CCD diffractometer Absorption correction: none 11267 measured reflections 2074 independent reflections 1552 reflections with I > 2σ(I) R int = 0.056

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.126 S = 1.03 2074 reflections 105 parameters H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Siemens, 1995 ▶); cell refinement: SMART; data reduction: SAINT (Siemens, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809024659/lh2852sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809024659/lh2852Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C30H34N2O6F(000) = 552
Mr = 518.59Dx = 1.270 Mg m3
Monoclinic, C2/mMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 77 reflections
a = 6.931 (2) Åθ = 3–23°
b = 9.461 (3) ŵ = 0.09 mm1
c = 20.805 (4) ÅT = 169 K
β = 96.059 (14)°Plate, yellow
V = 1356.6 (6) Å30.44 × 0.30 × 0.10 mm
Z = 2
Siemens SMART 1K CCD diffractometer1552 reflections with I > 2σ(I)
Radiation source: normal-focus sealed tubeRint = 0.056
graphiteθmax = 30.5°, θmin = 2.0°
ω scansh = −9→9
11267 measured reflectionsk = −13→12
2074 independent reflectionsl = −29→29
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.126H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.06P)2 + 0.9P] where P = (Fo2 + 2Fc2)/3
2074 reflections(Δ/σ)max = 0.001
105 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.58234 (19)0.00000.29187 (6)0.0310 (3)
O20.2989 (2)0.00000.33551 (6)0.0396 (4)
O3−0.0951 (2)0.00000.09831 (7)0.0323 (3)
N10.0672 (2)0.00000.13356 (7)0.0231 (3)
C10.9329 (3)0.00000.46943 (8)0.0231 (4)
C20.8678 (2)0.12604 (16)0.43958 (6)0.0317 (3)
H2A0.90760.21350.45920.038*
C30.7462 (2)0.12691 (16)0.38187 (7)0.0321 (3)
H3A0.70360.21370.36220.039*
C40.6887 (3)0.00000.35376 (8)0.0261 (4)
C50.3862 (3)0.00000.28870 (8)0.0211 (4)
C60.2971 (2)0.00000.22093 (8)0.0179 (3)
C70.3911 (3)0.00000.16826 (8)0.0190 (3)
H7A0.52850.00000.16960.023*
C80.2570 (3)0.00000.10658 (8)0.0205 (3)
C90.0794 (2)0.00000.20539 (8)0.0185 (3)
C100.2784 (2)0.13302 (16)0.06612 (7)0.0324 (3)
H10A0.17990.13250.02870.049*
H10B0.40790.13480.05120.049*
H10C0.26110.21690.09250.049*
C11−0.01778 (19)0.13337 (14)0.22809 (7)0.0261 (3)
H11A−0.15350.13600.20930.039*
H11B0.05030.21700.21420.039*
H11C−0.01250.13270.27530.039*
U11U22U33U12U13U23
O10.0170 (6)0.0590 (9)0.0159 (6)0.000−0.0032 (5)0.000
O20.0240 (7)0.0753 (12)0.0194 (6)0.0000.0022 (5)0.000
O30.0215 (7)0.0429 (8)0.0295 (7)0.000−0.0116 (5)0.000
N10.0176 (7)0.0302 (8)0.0200 (7)0.000−0.0050 (5)0.000
C10.0194 (8)0.0309 (9)0.0182 (8)0.000−0.0018 (6)0.000
C20.0363 (8)0.0306 (7)0.0256 (7)0.0027 (6)−0.0087 (6)−0.0022 (5)
C30.0340 (8)0.0360 (8)0.0244 (6)0.0067 (6)−0.0066 (5)0.0026 (6)
C40.0166 (8)0.0452 (11)0.0157 (8)0.000−0.0023 (6)0.000
C50.0183 (8)0.0246 (8)0.0195 (8)0.000−0.0017 (6)0.000
C60.0164 (7)0.0172 (7)0.0192 (8)0.000−0.0020 (6)0.000
C70.0179 (8)0.0188 (8)0.0193 (8)0.000−0.0021 (6)0.000
C80.0211 (8)0.0226 (8)0.0169 (7)0.000−0.0015 (6)0.000
C90.0159 (7)0.0193 (8)0.0199 (8)0.000−0.0006 (6)0.000
C100.0376 (8)0.0321 (7)0.0262 (7)−0.0044 (6)−0.0032 (6)0.0093 (6)
C110.0200 (6)0.0234 (6)0.0346 (7)0.0024 (5)0.0012 (5)−0.0035 (5)
O1—C51.354 (2)C6—C71.332 (2)
O1—C41.414 (2)C6—C91.509 (2)
O2—C51.199 (2)C7—C81.503 (2)
O3—N11.2766 (19)C7—H7A0.9500
N1—C81.484 (2)C8—C10i1.5299 (17)
N1—C91.488 (2)C8—C101.5299 (17)
C1—C2i1.3970 (17)C9—C111.5285 (16)
C1—C21.3971 (17)C9—C11i1.5285 (16)
C1—C1ii1.495 (3)C10—H10A0.9800
C2—C31.3922 (19)C10—H10B0.9800
C2—H2A0.9500C10—H10C0.9800
C3—C41.3760 (17)C11—H11A0.9800
C3—H3A0.9500C11—H11B0.9800
C4—C3i1.3761 (17)C11—H11C0.9800
C5—C61.478 (2)
C5—O1—C4117.92 (14)N1—C8—C799.78 (13)
O3—N1—C8123.07 (14)N1—C8—C10i110.45 (10)
O3—N1—C9122.02 (15)C7—C8—C10i112.51 (9)
C8—N1—C9114.91 (13)N1—C8—C10110.45 (10)
C2i—C1—C2117.19 (16)C7—C8—C10112.51 (9)
C2i—C1—C1ii121.40 (8)C10i—C8—C10110.69 (15)
C2—C1—C1ii121.40 (8)N1—C9—C699.50 (13)
C3—C2—C1121.74 (13)N1—C9—C11109.27 (9)
C3—C2—H2A119.1C6—C9—C11113.40 (9)
C1—C2—H2A119.1N1—C9—C11i109.28 (9)
C4—C3—C2118.90 (13)C6—C9—C11i113.40 (9)
C4—C3—H3A120.6C11—C9—C11i111.28 (15)
C2—C3—H3A120.6C8—C10—H10A109.5
C3—C4—C3i121.52 (17)C8—C10—H10B109.5
C3—C4—O1119.12 (8)H10A—C10—H10B109.5
C3i—C4—O1119.12 (8)C8—C10—H10C109.5
O2—C5—O1123.36 (16)H10A—C10—H10C109.5
O2—C5—C6125.39 (17)H10B—C10—H10C109.5
O1—C5—C6111.25 (14)C9—C11—H11A109.5
C7—C6—C5126.39 (16)C9—C11—H11B109.5
C7—C6—C9112.83 (14)H11A—C11—H11B109.5
C5—C6—C9120.78 (14)C9—C11—H11C109.5
C6—C7—C8112.99 (16)H11A—C11—H11C109.5
C6—C7—H7A123.5H11B—C11—H11C109.5
C8—C7—H7A123.5
C2i—C1—C2—C3−1.2 (3)C9—N1—C8—C10i118.61 (10)
C1ii—C1—C2—C3178.55 (19)O3—N1—C8—C1061.39 (10)
C1—C2—C3—C40.1 (2)C9—N1—C8—C10−118.61 (10)
C2—C3—C4—C3i1.0 (3)C6—C7—C8—N10.0
C2—C3—C4—O1−173.34 (14)C6—C7—C8—C10i−117.08 (11)
C5—O1—C4—C3−92.77 (15)C6—C7—C8—C10117.08 (11)
C5—O1—C4—C3i92.77 (15)O3—N1—C9—C6180.0
C4—O1—C5—O20.0C8—N1—C9—C60.0
C4—O1—C5—C6180.0O3—N1—C9—C11−60.99 (10)
O2—C5—C6—C7180.0C8—N1—C9—C11119.01 (10)
O1—C5—C6—C70.0O3—N1—C9—C11i60.99 (10)
O2—C5—C6—C90.0C8—N1—C9—C11i−119.01 (10)
O1—C5—C6—C9180.0C7—C6—C9—N10.0
C5—C6—C7—C8180.0C5—C6—C9—N1180.0
C9—C6—C7—C80.0C7—C6—C9—C11−115.91 (11)
O3—N1—C8—C7180.0C5—C6—C9—C1164.09 (11)
C9—N1—C8—C70.0C7—C6—C9—C11i115.92 (11)
O3—N1—C8—C10i−61.39 (10)C5—C6—C9—C11i−64.08 (11)
D—H···AD—HH···AD···AD—H···A
C11—H11C···C3iii0.982.913.745 (2)143
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C11—H11C⋯C3i0.982.913.745 (2)143

Symmetry code: (i) .

  3 in total

1.  PELDOR at S- and X-band frequencies and the separation of exchange coupling from dipolar coupling.

Authors:  Axel Weber; Olav Schiemann; Bela Bode; Thomas F Prisner
Journal:  J Magn Reson       Date:  2002-08       Impact factor: 2.229

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  EPR probes with well-defined, long distances between two or three unpaired electrons

Authors: 
Journal:  J Org Chem       Date:  2000-11-03       Impact factor: 4.354

  3 in total
  4 in total

1.  4,4',4''-(Methane-triyl)triphenyl tris-(2,2,5,5-tetra-methyl-1-oxyl-3-pyrroline-3-carboxyl-ate) benzene tris-olvate.

Authors:  Denise Schuetz; Dominik Margraf; Thomas F Prisner; Jan W Bats
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-03

2.  2-(Biphenyl-4-yl-oxy)acetic acid.

Authors:  En-Ju Wang; Guang-Ying Chen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-29

3.  The crystal structure of 4'-{4-[(2,2,5,5-tetra-methyl-N-oxyl-3-pyrrolin-3-yl)ethyn-yl]phen-yl}-2,2':6',2''-terpyridine.

Authors:  Andreas Meyer; Jennifer Wiecek; Gregor Schnakenburg; Olav Schiemann
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-06-30

4.  Crystal structure of 4'-{[4-(2,2':6',2''-terpyrid-yl-4'-yl)phen-yl]ethyn-yl}biphenyl-4-yl (2,2,5,5-tetra-methyl-1-oxyl-3-pyrrolin-3-yl)formate benzene 2.5-solvate.

Authors:  Andreas Meyer; Gregor Schnakenburg; Olav Schiemann
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-09-26
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.