Literature DB >> 21583485

3-Hydr-oxy-3a,6,8c-trimethyl-perhydro-oxireno[2',3':7,8]naphtho[1,2-b]furan-7(2H)-one.

Victor Kesternich, Paulina Cortés, Iván Brito, Alejandro Cárdenas, Matías López-Rodríguez.   

Abstract

The title compound, C(15)H(22)O(4), consists of two trans-fused six-membered rings and a trans-fused five-membered γ-lactone. The ep-oxy and hydroxyl groups are α-oriented. The cyclo-hexane rings adopt half-chair and chair conformations and the lactone ring is in an envelope conformation. The mol-ecular structure is stabilized by one O-H⋯O and three C-H⋯O intra-molecular hydrogen bonds.

Entities:  

Year:  2009        PMID: 21583485      PMCID: PMC2977239          DOI: 10.1107/S1600536809025124

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to sesquiterpene lactones, see: Fraga (2008 ▶). For their biological activity, see: Pillay et al. (2007 ▶); Ohno et al. (2005 ▶); Lindenmeyer et al. (2006 ▶). For synthetic details, see: Villar et al. (1983 ▶); González, et al. (1982 ▶). For a related structure, see: Rychlewska et al. (1982 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C15H22O4 M = 266.33 Monoclinic, a = 8.251 (3) Å b = 7.239 (2) Å c = 11.434 (2) Å β = 94.201 (5)° V = 681.1 (3) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 292 K 0.20 × 0.09 × 0.08 mm

Data collection

Nonius KappaCCD area-detector diffractometer Absorption correction: none 6696 measured reflections 1601 independent reflections 1495 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.108 S = 1.13 1601 reflections 179 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.15 e Å−3 Data collection: COLLECT (Nonius, 2000 ▶); cell refinement: DENZO-SMN (Otwinowski & Minor, 1997 ▶); data reduction: DENZO-SMN; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809025124/pv2169sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809025124/pv2169Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H22O4F(000) = 288
Mr = 266.33Dx = 1.299 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71069 Å
Hall symbol: P 2ybCell parameters from 1601 reflections
a = 8.251 (3) Åθ = 2.4–27.1°
b = 7.239 (2) ŵ = 0.09 mm1
c = 11.434 (2) ÅT = 292 K
β = 94.201 (5)°Block, colourless
V = 681.1 (3) Å30.20 × 0.09 × 0.08 mm
Z = 2
Nonius KappaCCD area-detector diffractometer1495 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.042
graphiteθmax = 27.1°, θmin = 2.5°
φ scans, and ω scans with κ offsetsh = −8→10
6696 measured reflectionsk = −9→9
1601 independent reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.108H atoms treated by a mixture of independent and constrained refinement
S = 1.13w = 1/[σ2(Fo2) + (0.0654P)2 + 0.0443P] where P = (Fo2 + 2Fc2)/3
1601 reflections(Δ/σ)max < 0.001
179 parametersΔρmax = 0.17 e Å3
1 restraintΔρmin = −0.15 e Å3
Experimental. Melting points were determined on a Kofler-type apparatus and are uncorrected. The IR spectra were recorded on a Perkin-Elmer Spectrum BX spectrophotometer with KBr as support. The 1H-NMR spectra were obtained with a Brüker Advance DPX-400 at 400 MHz. The MS spectra were recorded on a VG AUTOSPEC FISON instrument. In the purification of the intermediates and final product column chromatography was carried out using Merck silica gel 0.065–0.2 mm. Melting point 473–475 K. IR cm-1: 3529 (O—H), 1769 (γ-lactone). 1H-NMR, δ (CDCl3): 3.96 (1H, dd, J=9.7 and 8.5 Hz, H6), 3.21 (1H, bs, H1), 3.03 (1H, bs, H3), 1.49 (3H, s, H15), 1.24 (3H, d, J= 6.8 Hz, H13), 1.21 (3H, s, H14). MS (m/z): 266.15 (M+, C15H22O4), 248.14 (M+– H2O).
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.6128 (2)0.3084 (3)0.41480 (13)0.0546 (5)
O20.51059 (16)0.2973 (2)0.58981 (11)0.0384 (4)
O30.4263 (2)0.0404 (3)0.90667 (14)0.0489 (4)
O40.0735 (3)−0.0003 (3)0.84929 (18)0.0662 (6)
H40.164 (5)−0.035 (7)0.855 (4)0.093 (15)*
C10.0892 (3)0.1905 (4)0.8793 (2)0.0509 (6)
H1−0.01870.23460.89660.061*
C20.2005 (3)0.2157 (5)0.98982 (19)0.0541 (6)
H2A0.1790.33511.0240.065*
H2B0.1760.12141.04620.065*
C30.3763 (3)0.2043 (4)0.96754 (17)0.0445 (5)
H30.45210.24681.03190.053*
C40.4356 (2)0.2197 (3)0.84932 (16)0.0356 (4)
C50.3118 (2)0.2328 (3)0.74257 (15)0.0303 (4)
H50.29250.10610.71490.036*
C60.3554 (2)0.3442 (3)0.63683 (15)0.0316 (4)
H60.35430.47610.65610.038*
C70.2322 (2)0.3066 (3)0.53335 (16)0.0364 (4)
H70.22110.17230.52560.044*
C80.0672 (3)0.3830 (4)0.55853 (19)0.0475 (6)
H8A−0.01190.35530.49390.057*
H8B0.07330.5160.56790.057*
C90.0161 (2)0.2934 (4)0.67131 (19)0.0490 (6)
H9A−0.00680.16390.65610.059*
H9B−0.08370.3510.69260.059*
C100.1444 (2)0.3084 (3)0.77649 (17)0.0385 (5)
C110.3227 (3)0.3750 (3)0.43019 (17)0.0395 (5)
H110.31290.50970.42560.047*
C120.4968 (3)0.3260 (3)0.47164 (16)0.0382 (4)
C130.2728 (4)0.2936 (5)0.31047 (19)0.0603 (7)
H13A0.34480.33760.25440.09*
H13B0.16350.33050.28680.09*
H13C0.27850.16130.31460.09*
C140.1588 (3)0.5107 (4)0.8180 (2)0.0560 (6)
H14A0.06790.54080.86230.084*
H14B0.15950.59080.75120.084*
H14C0.25780.52640.86650.084*
C150.6070 (3)0.2836 (5)0.83987 (19)0.0543 (7)
H15A0.66640.2730.9150.081*
H15B0.60660.41020.81480.081*
H15C0.65780.20860.78380.081*
U11U22U33U12U13U23
O10.0602 (10)0.0587 (10)0.0481 (8)0.0041 (9)0.0264 (7)0.0041 (9)
O20.0331 (6)0.0470 (8)0.0366 (7)0.0030 (7)0.0118 (5)0.0026 (7)
O30.0554 (9)0.0485 (10)0.0431 (8)0.0042 (8)0.0058 (6)0.0103 (7)
O40.0588 (12)0.0673 (13)0.0729 (13)−0.0278 (11)0.0077 (9)0.0140 (11)
C10.0335 (10)0.0708 (18)0.0504 (12)−0.0031 (12)0.0166 (9)0.0062 (12)
C20.0484 (12)0.0761 (18)0.0400 (10)−0.0032 (14)0.0186 (9)0.0033 (12)
C30.0437 (11)0.0569 (15)0.0332 (9)−0.0071 (11)0.0051 (8)0.0002 (10)
C40.0323 (9)0.0401 (11)0.0350 (9)0.0002 (9)0.0069 (7)0.0001 (9)
C50.0261 (8)0.0312 (9)0.0342 (9)−0.0001 (8)0.0076 (6)−0.0023 (8)
C60.0293 (8)0.0328 (10)0.0336 (9)0.0012 (8)0.0080 (7)−0.0007 (7)
C70.0381 (10)0.0341 (10)0.0374 (9)0.0014 (9)0.0042 (7)0.0025 (9)
C80.0364 (10)0.0569 (15)0.0489 (11)0.0073 (10)−0.0006 (8)0.0046 (11)
C90.0271 (8)0.0639 (15)0.0565 (12)0.0041 (10)0.0061 (8)0.0066 (12)
C100.0286 (8)0.0460 (12)0.0422 (9)0.0023 (9)0.0112 (7)0.0010 (10)
C110.0495 (11)0.0351 (10)0.0341 (9)−0.0003 (9)0.0052 (8)0.0014 (8)
C120.0457 (10)0.0329 (10)0.0374 (10)−0.0004 (9)0.0127 (8)0.0014 (8)
C130.0753 (16)0.0665 (17)0.0382 (11)0.0005 (15)−0.0017 (10)−0.0045 (13)
C140.0557 (14)0.0527 (15)0.0622 (15)0.0166 (12)0.0215 (11)−0.0093 (12)
C150.0320 (9)0.089 (2)0.0418 (10)−0.0093 (12)0.0040 (8)0.0017 (13)
O1—C121.202 (2)C7—C81.516 (3)
O2—C121.364 (2)C7—C111.524 (3)
O2—C61.464 (2)C7—H70.98
O3—C31.451 (3)C8—C91.530 (3)
O3—C41.459 (3)C8—H8A0.97
O4—C11.427 (4)C8—H8B0.97
O4—H40.78 (4)C9—C101.547 (3)
C1—C21.517 (3)C9—H9A0.97
C1—C101.548 (3)C9—H9B0.97
C1—H10.98C10—C141.541 (4)
C2—C31.493 (3)C11—C131.519 (3)
C2—H2A0.97C11—C121.521 (3)
C2—H2B0.97C11—H110.98
C3—C41.475 (3)C13—H13A0.96
C3—H30.98C13—H13B0.96
C4—C151.500 (3)C13—H13C0.96
C4—C51.536 (3)C14—H14A0.96
C5—C61.518 (2)C14—H14B0.96
C5—C101.561 (2)C14—H14C0.96
C5—H50.98C15—H15A0.96
C6—C71.527 (3)C15—H15B0.96
C6—H60.98C15—H15C0.96
C12—O2—C6108.47 (14)C7—C8—C9108.19 (19)
C3—O3—C460.93 (13)C7—C8—H8A110.1
C1—O4—H4103 (4)C9—C8—H8A110.1
O4—C1—C2110.8 (2)C7—C8—H8B110.1
O4—C1—C10112.2 (2)C9—C8—H8B110.1
C2—C1—C10111.9 (2)H8A—C8—H8B108.4
O4—C1—H1107.2C8—C9—C10114.25 (18)
C2—C1—H1107.2C8—C9—H9A108.7
C10—C1—H1107.2C10—C9—H9A108.7
C3—C2—C1112.77 (17)C8—C9—H9B108.7
C3—C2—H2A109C10—C9—H9B108.7
C1—C2—H2A109H9A—C9—H9B107.6
C3—C2—H2B109C14—C10—C9109.8 (2)
C1—C2—H2B109C14—C10—C1108.05 (19)
H2A—C2—H2B107.8C9—C10—C1109.22 (19)
O3—C3—C459.79 (13)C14—C10—C5111.13 (18)
O3—C3—C2116.2 (2)C9—C10—C5110.48 (16)
C4—C3—C2122.93 (18)C1—C10—C5108.08 (18)
O3—C3—H3115.4C13—C11—C12112.21 (19)
C4—C3—H3115.4C13—C11—C7117.1 (2)
C2—C3—H3115.4C12—C11—C7100.87 (15)
O3—C4—C359.28 (14)C13—C11—H11108.7
O3—C4—C15112.81 (18)C12—C11—H11108.7
C3—C4—C15117.85 (17)C7—C11—H11108.7
O3—C4—C5111.03 (17)O1—C12—O2120.52 (19)
C3—C4—C5119.16 (16)O1—C12—C11128.83 (18)
C15—C4—C5119.95 (17)O2—C12—C11110.63 (15)
C6—C5—C4118.90 (15)C11—C13—H13A109.5
C6—C5—C10106.09 (15)C11—C13—H13B109.5
C4—C5—C10111.90 (15)H13A—C13—H13B109.5
C6—C5—H5106.4C11—C13—H13C109.5
C4—C5—H5106.4H13A—C13—H13C109.5
C10—C5—H5106.4H13B—C13—H13C109.5
O2—C6—C5115.68 (15)C10—C14—H14A109.5
O2—C6—C7102.98 (14)C10—C14—H14B109.5
C5—C6—C7109.82 (16)H14A—C14—H14B109.5
O2—C6—H6109.4C10—C14—H14C109.5
C5—C6—H6109.4H14A—C14—H14C109.5
C7—C6—H6109.4H14B—C14—H14C109.5
C8—C7—C11121.77 (19)C4—C15—H15A109.5
C8—C7—C6110.13 (17)C4—C15—H15B109.5
C11—C7—C6101.85 (16)H15A—C15—H15B109.5
C8—C7—H7107.4C4—C15—H15C109.5
C11—C7—H7107.4H15A—C15—H15C109.5
C6—C7—H7107.4H15B—C15—H15C109.5
O4—C1—C2—C379.3 (3)C11—C7—C8—C9−176.7 (2)
C10—C1—C2—C3−46.7 (3)C6—C7—C8—C9−57.7 (3)
C4—O3—C3—C2114.5 (2)C7—C8—C9—C1052.5 (3)
C1—C2—C3—O3−53.5 (3)C8—C9—C10—C1469.4 (3)
C1—C2—C3—C416.1 (4)C8—C9—C10—C1−172.3 (2)
C3—O3—C4—C15109.9 (2)C8—C9—C10—C5−53.5 (3)
C3—O3—C4—C5−112.26 (18)O4—C1—C10—C14−179.6 (2)
C2—C3—C4—O3−103.4 (3)C2—C1—C10—C14−54.3 (3)
O3—C3—C4—C15−101.3 (2)O4—C1—C10—C961.0 (3)
C2—C3—C4—C15155.3 (3)C2—C1—C10—C9−173.8 (2)
O3—C3—C4—C598.4 (2)O4—C1—C10—C5−59.3 (2)
C2—C3—C4—C5−4.9 (4)C2—C1—C10—C566.0 (3)
O3—C4—C5—C6−146.38 (16)C6—C5—C10—C14−65.2 (2)
C3—C4—C5—C6148.0 (2)C4—C5—C10—C1466.0 (2)
C15—C4—C5—C6−11.9 (3)C6—C5—C10—C957.0 (2)
O3—C4—C5—C1089.3 (2)C4—C5—C10—C9−171.85 (19)
C3—C4—C5—C1023.7 (3)C6—C5—C10—C1176.44 (18)
C15—C4—C5—C10−136.2 (2)C4—C5—C10—C1−52.4 (2)
C12—O2—C6—C5148.07 (17)C8—C7—C11—C13−81.2 (3)
C12—O2—C6—C728.3 (2)C6—C7—C11—C13155.8 (2)
C4—C5—C6—O252.5 (2)C8—C7—C11—C12156.7 (2)
C10—C5—C6—O2179.57 (16)C6—C7—C11—C1233.8 (2)
C4—C5—C6—C7168.51 (17)C6—O2—C12—O1175.0 (2)
C10—C5—C6—C7−64.4 (2)C6—O2—C12—C11−6.3 (2)
O2—C6—C7—C8−169.05 (17)C13—C11—C12—O134.9 (4)
C5—C6—C7—C867.2 (2)C7—C11—C12—O1160.3 (3)
O2—C6—C7—C11−38.5 (2)C13—C11—C12—O2−143.7 (2)
C5—C6—C7—C11−162.29 (16)C7—C11—C12—O2−18.2 (2)
D—H···AD—HH···AD···AD—H···A
O4—H4···O30.79 (4)2.27 (4)2.952 (3)146 (5)
C9—H9A···O40.972.552.958 (3)105
C5—H5···O40.982.572.925 (3)101
C15—H15C···O20.962.532.913 (3)104
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4⋯O30.79 (4)2.27 (4)2.952 (3)146 (5)
C9—H9A⋯O40.972.552.958 (3)105
C5—H5⋯O40.982.572.925 (3)101
C15—H15C⋯O20.962.532.913 (3)104
  5 in total

1.  Sesquiterpene lactones as inhibitors of IL-8 expression in HeLa cells.

Authors:  Maja T Lindenmeyer; Andrea Hrenn; Claudia Kern; Victor Castro; Renato Murillo; Stefan Müller; Stefan Laufer; Jürgen Schulte-Mönting; Bettina Siedle; Irmgard Merfort
Journal:  Bioorg Med Chem       Date:  2005-12-01       Impact factor: 3.641

2.  Isolation and identification of antiplasmodial sesquiterpene lactones from Oncosiphon piluliferum.

Authors:  Pamisha Pillay; Robert Vleggaar; Vinesh J Maharaj; Peter J Smith; Carmen A Lategan
Journal:  J Ethnopharmacol       Date:  2007-02-09       Impact factor: 4.360

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 4.  Natural sesquiterpenoids.

Authors:  Braulio M Fraga
Journal:  Nat Prod Rep       Date:  2008-10-14       Impact factor: 13.423

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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