| Literature DB >> 21583468 |
Zhengde Tan, Yi Bing, Shen Fang, Zhao Kai, Yang Yan.
Abstract
In the title compound, C(12)H(7)Cl(2)FN(2)O, the dihedral angle between the phenyl and pyridine rings is 42.5 (2) Å and an intramolecular N-H⋯N hydrogen bond occurs. The crystal structure is stabilized by C-H⋯O, C-H⋯F and C-Cl short contacts.Entities:
Year: 2009 PMID: 21583468 PMCID: PMC2977294 DOI: 10.1107/S1600536809024799
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H7Cl2FN2O | |
| Orthorhombic, | Mo |
| Hall symbol: P 2c -2ac | Cell parameters from 1638 reflections |
| θ = 2.9–27.0° | |
| µ = 0.53 mm−1 | |
| Block, colorless | |
| 0.45 × 0.33 × 0.31 mm |
| Bruker SMART CCD diffractometer | 1959 independent reflections |
| Radiation source: fine-focus sealed tube | 1582 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.0°, θmin = 1.6° |
| Absorption correction: multi-scan ( | |
| 5652 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.21 e Å−3 | |
| 1959 reflections | Δρmin = −0.20 e Å−3 |
| 163 parameters | Extinction correction: |
| 1 restraint | Extinction coefficient: 0.064 (9) |
| Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), 826 Friedel pairs |
| Secondary atom site location: difference Fourier map | Flack parameter: −0.04 (12) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.29548 (4) | 0.3691 (3) | 0.97142 (12) | 0.0657 (4) | |
| Cl2 | 0.10409 (7) | 0.8942 (4) | 0.69084 (13) | 0.0830 (5) | |
| N1 | 0.14698 (14) | 0.5722 (9) | 0.8609 (3) | 0.0479 (9) | |
| N2 | 0.11700 (14) | 0.2081 (9) | 1.0330 (3) | 0.0468 (9) | |
| H2 | 0.0985 | 0.2817 | 0.9747 | 0.056* | |
| F1 | −0.00073 (16) | −0.4220 (10) | 1.3695 (4) | 0.1088 (14) | |
| O1 | 0.20091 (13) | 0.1700 (12) | 1.1055 (4) | 0.0917 (17) | |
| C1 | 0.17010 (17) | 0.2639 (11) | 1.0316 (4) | 0.0491 (11) | |
| C2 | 0.18767 (17) | 0.4557 (11) | 0.9264 (4) | 0.0449 (11) | |
| C3 | 0.24053 (16) | 0.5164 (10) | 0.8958 (4) | 0.0430 (10) | |
| C4 | 0.2520 (2) | 0.7023 (11) | 0.7983 (4) | 0.0523 (11) | |
| H4 | 0.2873 | 0.7439 | 0.7771 | 0.063* | |
| C5 | 0.2098 (2) | 0.8244 (12) | 0.7333 (5) | 0.0566 (12) | |
| H5 | 0.2157 | 0.9518 | 0.6680 | 0.068* | |
| C6 | 0.15852 (18) | 0.7482 (11) | 0.7701 (4) | 0.0493 (11) | |
| C7 | 0.08862 (17) | 0.0410 (10) | 1.1205 (4) | 0.0418 (10) | |
| C8 | 0.1042 (2) | 0.0484 (13) | 1.2409 (5) | 0.0595 (13) | |
| H8 | 0.1342 | 0.1585 | 1.2654 | 0.071* | |
| C9 | 0.0732 (2) | −0.1150 (15) | 1.3226 (5) | 0.0756 (17) | |
| H9 | 0.0829 | −0.1168 | 1.4030 | 0.091* | |
| C10 | 0.0290 (2) | −0.2722 (14) | 1.2864 (6) | 0.0714 (16) | |
| C11 | 0.0144 (2) | −0.2826 (13) | 1.1691 (6) | 0.0688 (15) | |
| H11 | −0.0155 | −0.3947 | 1.1457 | 0.083* | |
| C12 | 0.04429 (18) | −0.1262 (13) | 1.0851 (5) | 0.0559 (13) | |
| H12 | 0.0346 | −0.1332 | 1.0048 | 0.067* |
| Cl1 | 0.0458 (6) | 0.0924 (10) | 0.0588 (7) | 0.0066 (6) | 0.0025 (6) | 0.0119 (8) |
| Cl2 | 0.0762 (9) | 0.0970 (11) | 0.0756 (10) | −0.0019 (8) | −0.0244 (8) | 0.0324 (9) |
| N1 | 0.052 (2) | 0.050 (2) | 0.042 (2) | −0.0034 (18) | 0.0024 (18) | 0.0056 (19) |
| N2 | 0.0447 (19) | 0.055 (2) | 0.040 (2) | −0.0029 (17) | −0.0053 (16) | 0.0082 (18) |
| F1 | 0.110 (3) | 0.108 (3) | 0.108 (3) | −0.014 (2) | 0.051 (2) | 0.036 (2) |
| O1 | 0.048 (2) | 0.148 (5) | 0.079 (3) | 0.003 (2) | −0.0076 (18) | 0.068 (3) |
| C1 | 0.044 (2) | 0.055 (3) | 0.048 (3) | 0.003 (2) | 0.000 (2) | 0.007 (2) |
| C2 | 0.047 (2) | 0.055 (3) | 0.032 (2) | 0.005 (2) | 0.0023 (18) | 0.000 (2) |
| C3 | 0.049 (2) | 0.043 (2) | 0.037 (2) | −0.0003 (19) | 0.0002 (19) | −0.0018 (18) |
| C4 | 0.056 (3) | 0.058 (3) | 0.043 (3) | −0.007 (2) | 0.009 (2) | 0.001 (2) |
| C5 | 0.071 (3) | 0.057 (3) | 0.042 (3) | −0.008 (2) | 0.001 (2) | 0.011 (2) |
| C6 | 0.054 (3) | 0.052 (3) | 0.042 (3) | −0.003 (2) | −0.006 (2) | 0.001 (2) |
| C7 | 0.047 (2) | 0.037 (2) | 0.042 (3) | 0.0010 (19) | 0.009 (2) | 0.0005 (19) |
| C8 | 0.054 (3) | 0.073 (4) | 0.052 (3) | −0.004 (3) | 0.003 (2) | 0.005 (3) |
| C9 | 0.082 (4) | 0.096 (5) | 0.049 (3) | 0.008 (3) | 0.017 (3) | 0.018 (3) |
| C10 | 0.072 (4) | 0.065 (4) | 0.078 (4) | 0.004 (3) | 0.034 (3) | 0.017 (3) |
| C11 | 0.053 (3) | 0.062 (3) | 0.092 (5) | −0.010 (2) | 0.017 (3) | −0.001 (3) |
| C12 | 0.049 (3) | 0.062 (3) | 0.057 (3) | −0.007 (2) | 0.003 (2) | −0.002 (2) |
| Cl1—C3 | 1.734 (4) | C4—H4 | 0.9300 |
| Cl2—C6 | 1.741 (5) | C5—C6 | 1.383 (6) |
| N1—C6 | 1.305 (6) | C5—H5 | 0.9300 |
| N1—C2 | 1.351 (6) | C7—C12 | 1.383 (7) |
| N2—C1 | 1.346 (5) | C7—C8 | 1.400 (7) |
| N2—C7 | 1.411 (6) | C8—C9 | 1.393 (7) |
| N2—H2 | 0.8600 | C8—H8 | 0.9300 |
| F1—C10 | 1.356 (6) | C9—C10 | 1.361 (9) |
| O1—C1 | 1.200 (5) | C9—H9 | 0.9300 |
| C1—C2 | 1.508 (6) | C10—C11 | 1.360 (9) |
| C2—C3 | 1.387 (6) | C11—C12 | 1.379 (8) |
| C3—C4 | 1.389 (6) | C11—H11 | 0.9300 |
| C4—C5 | 1.385 (7) | C12—H12 | 0.9300 |
| C6—N1—C2 | 118.6 (4) | N1—C6—Cl2 | 116.1 (3) |
| C1—N2—C7 | 126.5 (4) | C5—C6—Cl2 | 118.7 (4) |
| C1—N2—H2 | 116.7 | C12—C7—C8 | 120.6 (4) |
| C7—N2—H2 | 116.7 | C12—C7—N2 | 118.4 (4) |
| O1—C1—N2 | 124.0 (4) | C8—C7—N2 | 120.9 (4) |
| O1—C1—C2 | 122.7 (4) | C9—C8—C7 | 117.6 (5) |
| N2—C1—C2 | 113.3 (4) | C9—C8—H8 | 121.2 |
| N1—C2—C3 | 120.5 (4) | C7—C8—H8 | 121.2 |
| N1—C2—C1 | 114.5 (4) | C10—C9—C8 | 120.9 (5) |
| C3—C2—C1 | 125.1 (4) | C10—C9—H9 | 119.5 |
| C2—C3—C4 | 120.1 (4) | C8—C9—H9 | 119.5 |
| C2—C3—Cl1 | 124.0 (3) | F1—C10—C11 | 119.9 (6) |
| C4—C3—Cl1 | 115.9 (3) | F1—C10—C9 | 118.9 (6) |
| C5—C4—C3 | 118.7 (4) | C11—C10—C9 | 121.3 (5) |
| C5—C4—H4 | 120.6 | C10—C11—C12 | 119.7 (5) |
| C3—C4—H4 | 120.6 | C10—C11—H11 | 120.2 |
| C6—C5—C4 | 116.9 (5) | C12—C11—H11 | 120.2 |
| C6—C5—H5 | 121.6 | C11—C12—C7 | 119.9 (5) |
| C4—C5—H5 | 121.6 | C11—C12—H12 | 120.0 |
| N1—C6—C5 | 125.2 (5) | C7—C12—H12 | 120.0 |
| C7—N2—C1—O1 | 1.7 (8) | C2—N1—C6—Cl2 | −179.2 (3) |
| C7—N2—C1—C2 | −178.8 (4) | C4—C5—C6—N1 | 0.2 (8) |
| C6—N1—C2—C3 | −1.6 (7) | C4—C5—C6—Cl2 | −179.6 (4) |
| C6—N1—C2—C1 | 178.1 (4) | C1—N2—C7—C12 | −147.3 (5) |
| O1—C1—C2—N1 | −172.2 (5) | C1—N2—C7—C8 | 33.9 (7) |
| N2—C1—C2—N1 | 8.3 (6) | C12—C7—C8—C9 | −0.7 (8) |
| O1—C1—C2—C3 | 7.5 (8) | N2—C7—C8—C9 | 178.1 (5) |
| N2—C1—C2—C3 | −172.0 (4) | C7—C8—C9—C10 | −0.9 (9) |
| N1—C2—C3—C4 | 1.1 (7) | C8—C9—C10—F1 | −178.5 (5) |
| C1—C2—C3—C4 | −178.5 (4) | C8—C9—C10—C11 | 2.0 (10) |
| N1—C2—C3—Cl1 | −178.1 (3) | F1—C10—C11—C12 | 179.1 (5) |
| C1—C2—C3—Cl1 | 2.3 (7) | C9—C10—C11—C12 | −1.4 (9) |
| C2—C3—C4—C5 | 0.1 (7) | C10—C11—C12—C7 | −0.2 (8) |
| Cl1—C3—C4—C5 | 179.3 (4) | C8—C7—C12—C11 | 1.3 (8) |
| C3—C4—C5—C6 | −0.7 (7) | N2—C7—C12—C11 | −177.5 (4) |
| C2—N1—C6—C5 | 0.9 (7) |
| H··· | ||||
| N2—H2···N1 | 0.86 | 2.17 | 2.606 (5) | 111 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2⋯N1 | 0.86 | 2.17 | 2.606 (5) | 111 |