Literature DB >> 21583468

3,6-Dichloro-N-(4-fluoro-phen-yl)picolinamide.

Zhengde Tan, Yi Bing, Shen Fang, Zhao Kai, Yang Yan.   

Abstract

In the title compound, C(12)H(7)Cl(2)FN(2)O, the dihedral angle between the phenyl and pyridine rings is 42.5 (2) Å and an intramolecular N-H⋯N hydrogen bond occurs. The crystal structure is stabilized by C-H⋯O, C-H⋯F and C-Cl short contacts.

Entities:  

Year:  2009        PMID: 21583468      PMCID: PMC2977294          DOI: 10.1107/S1600536809024799

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the chemical and pharmacological properties of amides, see: Liu et al. (2005 ▶); Sladowska & Sieklucka-Dziuba (1999 ▶).

Experimental

Crystal data

C12H7Cl2FN2O M = 285.10 Orthorhombic, a = 24.921 (2) Å b = 4.3735 (6) Å c = 11.1723 (14) Å V = 1217.7 (2) Å3 Z = 4 Mo Kα radiation μ = 0.53 mm−1 T = 298 K 0.45 × 0.33 × 0.31 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.796, T max = 0.852 5652 measured reflections 1959 independent reflections 1582 reflections with I > 2σ(I) R int = 0.066

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.140 S = 1.08 1959 reflections 163 parameters 1 restraint H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.20 e Å−3 Absolute structure: Flack (1983 ▶), 826 Friedel pairs Flack parameter: −0.04 (12) Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809024799/hg2522sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809024799/hg2522Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H7Cl2FN2OF(000) = 576
Mr = 285.10Dx = 1.555 Mg m3
Orthorhombic, Pca21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2acCell parameters from 1638 reflections
a = 24.921 (2) Åθ = 2.9–27.0°
b = 4.3735 (6) ŵ = 0.53 mm1
c = 11.1723 (14) ÅT = 298 K
V = 1217.7 (2) Å3Block, colorless
Z = 40.45 × 0.33 × 0.31 mm
Bruker SMART CCD diffractometer1959 independent reflections
Radiation source: fine-focus sealed tube1582 reflections with I > 2σ(I)
graphiteRint = 0.066
φ and ω scansθmax = 25.0°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −29→26
Tmin = 0.796, Tmax = 0.852k = −5→5
5652 measured reflectionsl = −13→11
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.051w = 1/[σ2(Fo2) + (0.0703P)2 + 0.2751P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.140(Δ/σ)max < 0.001
S = 1.08Δρmax = 0.21 e Å3
1959 reflectionsΔρmin = −0.20 e Å3
163 parametersExtinction correction: SHELXL97 (Sheldrick, 2008)
1 restraintExtinction coefficient: 0.064 (9)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 826 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: −0.04 (12)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.29548 (4)0.3691 (3)0.97142 (12)0.0657 (4)
Cl20.10409 (7)0.8942 (4)0.69084 (13)0.0830 (5)
N10.14698 (14)0.5722 (9)0.8609 (3)0.0479 (9)
N20.11700 (14)0.2081 (9)1.0330 (3)0.0468 (9)
H20.09850.28170.97470.056*
F1−0.00073 (16)−0.4220 (10)1.3695 (4)0.1088 (14)
O10.20091 (13)0.1700 (12)1.1055 (4)0.0917 (17)
C10.17010 (17)0.2639 (11)1.0316 (4)0.0491 (11)
C20.18767 (17)0.4557 (11)0.9264 (4)0.0449 (11)
C30.24053 (16)0.5164 (10)0.8958 (4)0.0430 (10)
C40.2520 (2)0.7023 (11)0.7983 (4)0.0523 (11)
H40.28730.74390.77710.063*
C50.2098 (2)0.8244 (12)0.7333 (5)0.0566 (12)
H50.21570.95180.66800.068*
C60.15852 (18)0.7482 (11)0.7701 (4)0.0493 (11)
C70.08862 (17)0.0410 (10)1.1205 (4)0.0418 (10)
C80.1042 (2)0.0484 (13)1.2409 (5)0.0595 (13)
H80.13420.15851.26540.071*
C90.0732 (2)−0.1150 (15)1.3226 (5)0.0756 (17)
H90.0829−0.11681.40300.091*
C100.0290 (2)−0.2722 (14)1.2864 (6)0.0714 (16)
C110.0144 (2)−0.2826 (13)1.1691 (6)0.0688 (15)
H11−0.0155−0.39471.14570.083*
C120.04429 (18)−0.1262 (13)1.0851 (5)0.0559 (13)
H120.0346−0.13321.00480.067*
U11U22U33U12U13U23
Cl10.0458 (6)0.0924 (10)0.0588 (7)0.0066 (6)0.0025 (6)0.0119 (8)
Cl20.0762 (9)0.0970 (11)0.0756 (10)−0.0019 (8)−0.0244 (8)0.0324 (9)
N10.052 (2)0.050 (2)0.042 (2)−0.0034 (18)0.0024 (18)0.0056 (19)
N20.0447 (19)0.055 (2)0.040 (2)−0.0029 (17)−0.0053 (16)0.0082 (18)
F10.110 (3)0.108 (3)0.108 (3)−0.014 (2)0.051 (2)0.036 (2)
O10.048 (2)0.148 (5)0.079 (3)0.003 (2)−0.0076 (18)0.068 (3)
C10.044 (2)0.055 (3)0.048 (3)0.003 (2)0.000 (2)0.007 (2)
C20.047 (2)0.055 (3)0.032 (2)0.005 (2)0.0023 (18)0.000 (2)
C30.049 (2)0.043 (2)0.037 (2)−0.0003 (19)0.0002 (19)−0.0018 (18)
C40.056 (3)0.058 (3)0.043 (3)−0.007 (2)0.009 (2)0.001 (2)
C50.071 (3)0.057 (3)0.042 (3)−0.008 (2)0.001 (2)0.011 (2)
C60.054 (3)0.052 (3)0.042 (3)−0.003 (2)−0.006 (2)0.001 (2)
C70.047 (2)0.037 (2)0.042 (3)0.0010 (19)0.009 (2)0.0005 (19)
C80.054 (3)0.073 (4)0.052 (3)−0.004 (3)0.003 (2)0.005 (3)
C90.082 (4)0.096 (5)0.049 (3)0.008 (3)0.017 (3)0.018 (3)
C100.072 (4)0.065 (4)0.078 (4)0.004 (3)0.034 (3)0.017 (3)
C110.053 (3)0.062 (3)0.092 (5)−0.010 (2)0.017 (3)−0.001 (3)
C120.049 (3)0.062 (3)0.057 (3)−0.007 (2)0.003 (2)−0.002 (2)
Cl1—C31.734 (4)C4—H40.9300
Cl2—C61.741 (5)C5—C61.383 (6)
N1—C61.305 (6)C5—H50.9300
N1—C21.351 (6)C7—C121.383 (7)
N2—C11.346 (5)C7—C81.400 (7)
N2—C71.411 (6)C8—C91.393 (7)
N2—H20.8600C8—H80.9300
F1—C101.356 (6)C9—C101.361 (9)
O1—C11.200 (5)C9—H90.9300
C1—C21.508 (6)C10—C111.360 (9)
C2—C31.387 (6)C11—C121.379 (8)
C3—C41.389 (6)C11—H110.9300
C4—C51.385 (7)C12—H120.9300
C6—N1—C2118.6 (4)N1—C6—Cl2116.1 (3)
C1—N2—C7126.5 (4)C5—C6—Cl2118.7 (4)
C1—N2—H2116.7C12—C7—C8120.6 (4)
C7—N2—H2116.7C12—C7—N2118.4 (4)
O1—C1—N2124.0 (4)C8—C7—N2120.9 (4)
O1—C1—C2122.7 (4)C9—C8—C7117.6 (5)
N2—C1—C2113.3 (4)C9—C8—H8121.2
N1—C2—C3120.5 (4)C7—C8—H8121.2
N1—C2—C1114.5 (4)C10—C9—C8120.9 (5)
C3—C2—C1125.1 (4)C10—C9—H9119.5
C2—C3—C4120.1 (4)C8—C9—H9119.5
C2—C3—Cl1124.0 (3)F1—C10—C11119.9 (6)
C4—C3—Cl1115.9 (3)F1—C10—C9118.9 (6)
C5—C4—C3118.7 (4)C11—C10—C9121.3 (5)
C5—C4—H4120.6C10—C11—C12119.7 (5)
C3—C4—H4120.6C10—C11—H11120.2
C6—C5—C4116.9 (5)C12—C11—H11120.2
C6—C5—H5121.6C11—C12—C7119.9 (5)
C4—C5—H5121.6C11—C12—H12120.0
N1—C6—C5125.2 (5)C7—C12—H12120.0
C7—N2—C1—O11.7 (8)C2—N1—C6—Cl2−179.2 (3)
C7—N2—C1—C2−178.8 (4)C4—C5—C6—N10.2 (8)
C6—N1—C2—C3−1.6 (7)C4—C5—C6—Cl2−179.6 (4)
C6—N1—C2—C1178.1 (4)C1—N2—C7—C12−147.3 (5)
O1—C1—C2—N1−172.2 (5)C1—N2—C7—C833.9 (7)
N2—C1—C2—N18.3 (6)C12—C7—C8—C9−0.7 (8)
O1—C1—C2—C37.5 (8)N2—C7—C8—C9178.1 (5)
N2—C1—C2—C3−172.0 (4)C7—C8—C9—C10−0.9 (9)
N1—C2—C3—C41.1 (7)C8—C9—C10—F1−178.5 (5)
C1—C2—C3—C4−178.5 (4)C8—C9—C10—C112.0 (10)
N1—C2—C3—Cl1−178.1 (3)F1—C10—C11—C12179.1 (5)
C1—C2—C3—Cl12.3 (7)C9—C10—C11—C12−1.4 (9)
C2—C3—C4—C50.1 (7)C10—C11—C12—C7−0.2 (8)
Cl1—C3—C4—C5179.3 (4)C8—C7—C12—C111.3 (8)
C3—C4—C5—C6−0.7 (7)N2—C7—C12—C11−177.5 (4)
C2—N1—C6—C50.9 (7)
D—H···AD—HH···AD···AD—H···A
N2—H2···N10.862.172.606 (5)111
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯N10.862.172.606 (5)111
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Investigations on the synthesis and pharmacological properties of amides of 7-methyl-3-phenyl-1-[2-hydroxy-3-(4-phenyl-1-piperazinyl)propyl]-2,4- dioxo-1,2,3,4-tetrahydropyrido[2,3-d]-pyrimidine-5-carboxylic acid.

Authors:  H Sladowska; M Sieklucka-Dziuba; G Rajtar; M Sadowski; Z Kleinrok
Journal:  Farmaco       Date:  1999 Nov-Dec
  2 in total

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