Literature DB >> 21583465

Di-n-butyl 5-amino-isophthalate.

Tian Zhou1, Ru-Jin Zhou, Zhe An.   

Abstract

The title compound, C(16)H(23)NO(4), is essentially planar except for the last two C atoms in each n-butyl group (r.m.s. deviation from the least-squares plane = 0.02 Å for 17 non-H atoms). In the crystal, inter-molecular N-H⋯O hydrogen bonds between the amine and carbonyl groups link the mol-ecules into one-dimensional chains.

Entities:  

Year:  2009        PMID: 21583465      PMCID: PMC2977371          DOI: 10.1107/S1600536809024696

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the related structure of 5-amino­isophthalic acid hemihydrate, see: Dobson & Gerkin (1998 ▶).

Experimental

Crystal data

C16H23NO4 M = 293.35 Monoclinic, a = 9.4350 (19) Å b = 9.1640 (18) Å c = 20.166 (4) Å β = 94.67 (3)° V = 1737.8 (6) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.12 × 0.10 × 0.08 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.991, T max = 0.994 8863 measured reflections 3169 independent reflections 1612 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.221 S = 1.04 3169 reflections 196 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809024696/bi2379sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809024696/bi2379Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H23NO4F(000) = 632
Mr = 293.35Dx = 1.121 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3119 reflections
a = 9.4350 (19) Åθ = 2.0–25.5°
b = 9.1640 (18) ŵ = 0.08 mm1
c = 20.166 (4) ÅT = 296 K
β = 94.67 (3)°Block, colourless
V = 1737.8 (6) Å30.12 × 0.10 × 0.08 mm
Z = 4
Bruker APEXII CCD diffractometer3169 independent reflections
Radiation source: fine-focus sealed tube1612 reflections with I > 2σ(I)
graphiteRint = 0.029
φ and ω scansθmax = 25.5°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −7→11
Tmin = 0.991, Tmax = 0.994k = −11→10
8863 measured reflectionsl = −24→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.062Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.221H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.1119P)2 + 0.1542P] where P = (Fo2 + 2Fc2)/3
3169 reflections(Δ/σ)max < 0.001
196 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.8685 (2)0.3309 (2)0.44186 (12)0.1051 (8)
O20.6509 (2)0.3015 (2)0.39278 (11)0.0938 (7)
O30.3317 (2)0.8767 (3)0.44890 (13)0.1092 (8)
O40.29283 (19)0.6651 (2)0.39827 (11)0.0944 (7)
N10.8560 (3)0.8512 (4)0.5269 (2)0.1380 (15)
H1A0.933 (6)0.815 (7)0.540 (3)0.207*
H1B0.831 (6)0.926 (6)0.546 (3)0.207*
C10.7518 (3)0.3783 (3)0.42708 (14)0.0759 (8)
C20.7015 (2)0.5250 (3)0.44442 (12)0.0674 (7)
C30.7986 (3)0.6180 (3)0.47724 (14)0.0768 (8)
H3A0.89170.58680.48720.092*
C40.7598 (3)0.7572 (3)0.49558 (15)0.0856 (9)
C50.6193 (3)0.8002 (3)0.47979 (15)0.0808 (8)
H5A0.59050.89280.49190.097*
C60.5223 (3)0.7080 (3)0.44666 (13)0.0681 (7)
C70.5629 (3)0.5693 (3)0.42860 (12)0.0675 (7)
H7A0.49770.50680.40620.081*
C80.3749 (3)0.7609 (3)0.43193 (15)0.0784 (8)
C90.1463 (3)0.7056 (4)0.38233 (19)0.1024 (10)
H9A0.14060.79010.35330.123*
H9B0.10170.72960.42260.123*
C100.0741 (4)0.5806 (5)0.3489 (3)0.1371 (16)
H10A0.06570.50540.38220.165*
H10B−0.02180.61150.33440.165*
C110.1293 (6)0.5169 (9)0.2960 (4)0.220 (3)
H11A0.22570.48700.31010.265*
H11B0.13580.59120.26210.265*
C120.0559 (7)0.3906 (9)0.2644 (5)0.300 (6)
H12A0.10460.36020.22670.450*
H12B−0.04010.41700.24990.450*
H12C0.05530.31190.29580.450*
C130.6881 (4)0.1552 (3)0.3734 (2)0.1112 (11)
H13A0.72340.09920.41210.133*
H13B0.76140.15840.34240.133*
C140.5572 (5)0.0874 (4)0.3415 (3)0.1471 (16)
H14A0.5822−0.01000.32770.177*
H14B0.49130.07620.37570.177*
C150.4815 (6)0.1559 (6)0.2858 (3)0.175 (2)
H15A0.54470.16390.25040.210*
H15B0.45700.25420.29860.210*
C160.3471 (6)0.0794 (7)0.2586 (3)0.205 (3)
H16A0.30440.13310.22120.307*
H16B0.28170.07400.29260.307*
H16C0.3698−0.01730.24470.307*
U11U22U33U12U13U23
O10.0690 (13)0.0819 (14)0.160 (2)0.0183 (10)−0.0158 (13)−0.0206 (13)
O20.0795 (13)0.0724 (13)0.1264 (16)0.0090 (10)−0.0112 (11)−0.0208 (11)
O30.0665 (12)0.0882 (15)0.169 (2)0.0181 (11)−0.0143 (12)−0.0307 (14)
O40.0608 (11)0.0900 (14)0.1280 (17)0.0102 (10)−0.0193 (10)−0.0165 (12)
N10.0748 (18)0.093 (2)0.237 (4)0.0125 (15)−0.046 (2)−0.060 (2)
C10.0668 (17)0.0684 (17)0.0917 (19)0.0034 (14)0.0007 (14)−0.0048 (14)
C20.0591 (14)0.0654 (15)0.0775 (16)0.0036 (12)0.0031 (12)0.0013 (12)
C30.0570 (14)0.0715 (18)0.0993 (19)0.0082 (12)−0.0090 (13)−0.0062 (14)
C40.0631 (16)0.0731 (19)0.117 (2)0.0039 (14)−0.0137 (15)−0.0129 (16)
C50.0621 (16)0.0667 (16)0.111 (2)0.0084 (13)−0.0059 (14)−0.0116 (15)
C60.0563 (14)0.0651 (16)0.0821 (17)0.0020 (12)−0.0004 (12)0.0021 (13)
C70.0604 (15)0.0667 (16)0.0747 (16)0.0012 (12)0.0006 (12)0.0007 (12)
C80.0611 (15)0.0721 (19)0.100 (2)0.0036 (14)−0.0054 (14)−0.0018 (15)
C90.0600 (17)0.119 (3)0.123 (2)0.0091 (17)−0.0191 (16)−0.007 (2)
C100.080 (2)0.156 (4)0.168 (4)0.000 (2)−0.030 (2)−0.036 (3)
C110.127 (4)0.280 (8)0.248 (7)−0.001 (5)−0.022 (4)−0.138 (7)
C120.173 (6)0.301 (10)0.410 (13)−0.007 (5)−0.074 (6)−0.230 (10)
C130.114 (3)0.073 (2)0.143 (3)0.0126 (18)−0.009 (2)−0.0249 (19)
C140.155 (4)0.088 (3)0.190 (4)0.007 (2)−0.038 (3)−0.042 (3)
C150.168 (4)0.148 (4)0.197 (5)0.010 (3)−0.052 (4)−0.041 (4)
C160.140 (4)0.228 (6)0.235 (6)−0.002 (4)−0.053 (4)−0.094 (5)
O1—C11.198 (3)C9—H9B0.970
O2—C11.331 (3)C10—C111.357 (6)
O2—C131.448 (4)C10—H10A0.970
O3—C81.197 (3)C10—H10B0.970
O4—C81.321 (3)C11—C121.468 (8)
O4—C91.442 (3)C11—H11A0.970
N1—C41.368 (4)C11—H11B0.970
N1—H1A0.83 (5)C12—H12A0.960
N1—H1B0.83 (6)C12—H12B0.960
C1—C21.478 (4)C12—H12C0.960
C2—C31.380 (4)C13—C141.481 (5)
C2—C71.382 (3)C13—H13A0.970
C3—C41.385 (4)C13—H13B0.970
C3—H3A0.930C14—C151.426 (7)
C4—C51.395 (4)C14—H14A0.970
C5—C61.377 (4)C14—H14B0.970
C5—H5A0.930C15—C161.513 (7)
C6—C71.385 (3)C15—H15A0.970
C6—C81.480 (4)C15—H15B0.970
C7—H7A0.930C16—H16A0.960
C9—C101.468 (5)C16—H16B0.960
C9—H9A0.970C16—H16C0.960
C1—O2—C13116.8 (2)C9—C10—H10B107.3
C8—O4—C9117.0 (2)H10A—C10—H10B106.9
C4—N1—H1A116 (4)C10—C11—C12118.9 (7)
C4—N1—H1B122 (4)C10—C11—H11A107.6
H1A—N1—H1B117 (5)C12—C11—H11A107.6
O1—C1—O2122.8 (2)C10—C11—H11B107.6
O1—C1—C2125.3 (3)C12—C11—H11B107.6
O2—C1—C2112.0 (2)H11A—C11—H11B107.0
C3—C2—C7120.6 (2)C11—C12—H12A109.5
C3—C2—C1117.5 (2)C11—C12—H12B109.5
C7—C2—C1121.9 (2)H12A—C12—H12B109.5
C2—C3—C4121.1 (2)C11—C12—H12C109.5
C2—C3—H3A119.4H12A—C12—H12C109.5
C4—C3—H3A119.4H12B—C12—H12C109.5
N1—C4—C3121.5 (2)O2—C13—C14107.1 (3)
N1—C4—C5120.7 (3)O2—C13—H13A110.3
C3—C4—C5117.8 (2)C14—C13—H13A110.3
C6—C5—C4121.3 (3)O2—C13—H13B110.3
C6—C5—H5A119.4C14—C13—H13B110.3
C4—C5—H5A119.4H13A—C13—H13B108.6
C5—C6—C7120.2 (2)C15—C14—C13120.2 (5)
C5—C6—C8118.2 (2)C15—C14—H14A107.3
C7—C6—C8121.5 (2)C13—C14—H14A107.3
C2—C7—C6119.0 (2)C15—C14—H14B107.3
C2—C7—H7A120.5C13—C14—H14B107.3
C6—C7—H7A120.5H14A—C14—H14B106.9
O3—C8—O4122.5 (2)C14—C15—C16115.7 (5)
O3—C8—C6124.7 (3)C14—C15—H15A108.4
O4—C8—C6112.8 (3)C16—C15—H15A108.4
O4—C9—C10107.6 (3)C14—C15—H15B108.4
O4—C9—H9A110.2C16—C15—H15B108.4
C10—C9—H9A110.2H15A—C15—H15B107.4
O4—C9—H9B110.2C15—C16—H16A109.5
C10—C9—H9B110.2C15—C16—H16B109.5
H9A—C9—H9B108.5H16A—C16—H16B109.5
C11—C10—C9120.2 (4)C15—C16—H16C109.5
C11—C10—H10A107.3H16A—C16—H16C109.5
C9—C10—H10A107.3H16B—C16—H16C109.5
C11—C10—H10B107.3
C13—O2—C1—O1−0.1 (5)C1—C2—C7—C6179.6 (2)
C13—O2—C1—C2−179.6 (3)C5—C6—C7—C20.1 (4)
O1—C1—C2—C33.6 (4)C8—C6—C7—C2−179.1 (2)
O2—C1—C2—C3−176.9 (2)C9—O4—C8—O30.0 (4)
O1—C1—C2—C7−176.5 (3)C9—O4—C8—C6179.1 (2)
O2—C1—C2—C73.0 (4)C5—C6—C8—O3−2.9 (5)
C7—C2—C3—C40.5 (4)C7—C6—C8—O3176.4 (3)
C1—C2—C3—C4−179.6 (3)C5—C6—C8—O4178.0 (2)
C2—C3—C4—N1−178.7 (3)C7—C6—C8—O4−2.7 (4)
C2—C3—C4—C50.0 (4)C8—O4—C9—C10−176.6 (3)
N1—C4—C5—C6178.2 (3)O4—C9—C10—C11−51.7 (6)
C3—C4—C5—C6−0.4 (5)C9—C10—C11—C12179.0 (7)
C4—C5—C6—C70.4 (4)C1—O2—C13—C14175.1 (3)
C4—C5—C6—C8179.6 (3)O2—C13—C14—C1556.2 (6)
C3—C2—C7—C6−0.5 (4)C13—C14—C15—C16−178.3 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1i0.83 (5)2.30 (6)3.110 (4)165 (6)
N1—H1B···O3ii0.83 (6)2.38 (6)3.120 (4)149 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O1i0.83 (5)2.30 (6)3.110 (4)165 (6)
N1—H1B⋯O3ii0.83 (6)2.38 (6)3.120 (4)149 (5)

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  5-aminoisophthalic acid hemihydrate.

Authors:  A J Dobson; R E Gerkin
Journal:  Acta Crystallogr C       Date:  1998-10-15       Impact factor: 1.172

  2 in total

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