Literature DB >> 21583460

N,N'-p-Phenyl-enediisonicotinamide monohydrate.

Li Song, Wenxiang Chai, Junwei Lan.   

Abstract

The organic mol-ecule of the title compound, C(18)H(14)N(4)O(2)·H(2)O, lies on a center of inversion located at the centre of the central phenyl-ene ring. There are two half-molecules in the asymmetric unit. In the crystal, the mol-ecules are linked through by N-H⋯O and O-H⋯N hydrogen bonds involving the water mol-ecule, forming a layer structure. The layers inter-act by π-π inter-actions between the aromatic rings.

Entities:  

Year:  2009        PMID: 21583460      PMCID: PMC2977464          DOI: 10.1107/S1600536809024684

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to N,N′-p-phenylenediisonicotinamide complexes, see: Burchell et al. (2003 ▶, 2004 ▶); Niu et al. (2004 ▶); Pansanel et al. (2006 ▶).

Experimental

Crystal data

C18H14N4O2·H2O M = 336.35 Triclinic, a = 6.9936 (14) Å b = 10.852 (2) Å c = 11.285 (2) Å α = 95.98 (3)° β = 106.36 (3)° γ = 94.68 (3)° V = 811.8 (3) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.32 × 0.21 × 0.13 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (CrystalStructure; Rigaku/MSC, 2004 ▶) T min = 0.976, T max = 0.987 7994 measured reflections 3671 independent reflections 1782 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.163 S = 1.10 3671 reflections 235 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.20 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809024684/ng2603sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809024684/ng2603Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H14N4O2·H2OZ = 2
Mr = 336.35F(000) = 352
Triclinic, P1Dx = 1.376 Mg m3
a = 6.9936 (14) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.852 (2) Åθ = 3.1–27.5°
c = 11.285 (2) ŵ = 0.10 mm1
α = 95.98 (3)°T = 296 K
β = 106.36 (3)°Block, colorless
γ = 94.68 (3)°0.32 × 0.21 × 0.13 mm
V = 811.8 (3) Å3
Rigaku R-AXIS RAPID diffractometer3671 independent reflections
Radiation source: fine-focus sealed tube1782 reflections with I > 2σ(I)
Graphite MonochromatorRint = 0.039
ω scansθmax = 27.5°, θmin = 3.1°
Absorption correction: multi-scan (CrystalStructure; Rigaku/MSC, 2004)h = −9→8
Tmin = 0.976, Tmax = 0.987k = −14→13
7994 measured reflectionsl = −14→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.050H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.163w = 1/[σ2(Fo2) + (0.0641P)2 + 0.0836P] where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max < 0.001
3671 reflectionsΔρmax = 0.24 e Å3
235 parametersΔρmin = −0.20 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.014 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.5143 (3)0.75658 (16)0.44339 (18)0.0695 (6)
N10.3107 (4)0.4128 (2)0.0888 (2)0.0784 (8)
C10.2062 (5)0.4882 (3)0.1391 (3)0.0791 (9)
H10.06450.46910.11500.095*
O20.1628 (3)0.77553 (17)0.78063 (19)0.0773 (6)
N20.7556 (3)0.79239 (16)0.34696 (18)0.0511 (5)
H2A0.79460.76540.28220.061*
C20.2908 (4)0.5924 (2)0.2241 (3)0.0667 (7)
H20.20900.64360.25690.080*
O30.1253 (3)0.2348 (2)−0.12516 (19)0.0774 (7)
N30.7983 (4)1.0595 (2)0.8737 (2)0.0693 (7)
C30.4971 (4)0.6211 (2)0.2608 (2)0.0507 (6)
N40.2782 (3)0.70930 (17)0.61858 (19)0.0545 (5)
H4A0.37160.72660.58250.065*
C40.6076 (4)0.5436 (2)0.2091 (2)0.0557 (7)
H40.74950.56070.23130.067*
C50.5096 (5)0.4414 (2)0.1251 (3)0.0680 (8)
H50.58770.38820.09110.082*
C60.5894 (4)0.7301 (2)0.3589 (2)0.0522 (6)
C70.8750 (3)0.89703 (19)0.4275 (2)0.0458 (6)
C80.8041 (4)0.9772 (2)0.5031 (2)0.0558 (7)
H80.66980.96250.50580.067*
C91.0706 (4)0.9205 (2)0.4249 (2)0.0556 (6)
H91.12010.86530.37250.067*
C100.6170 (4)1.0792 (2)0.8812 (3)0.0671 (8)
H100.60151.15720.92190.081*
C110.4505 (4)0.9927 (2)0.8333 (2)0.0582 (7)
H110.32431.01050.84260.070*
C120.4690 (4)0.8799 (2)0.7717 (2)0.0517 (6)
C130.6558 (4)0.8578 (2)0.7638 (3)0.0612 (7)
H130.67480.78100.72240.073*
C140.8155 (4)0.9488 (3)0.8169 (3)0.0712 (8)
H140.94470.93160.81280.085*
C150.2873 (4)0.7842 (2)0.7236 (3)0.0558 (6)
H150.173 (6)0.289 (3)−0.050 (4)0.135 (14)*
C160.1331 (3)0.6052 (2)0.5602 (2)0.0483 (6)
H160.026 (6)0.191 (4)−0.110 (4)0.130 (14)*
C17−0.0548 (4)0.5897 (2)0.5761 (2)0.0569 (7)
H17−0.09390.65100.62830.068*
C180.1870 (4)0.5146 (2)0.4836 (2)0.0563 (7)
H180.31650.52440.47200.068*
U11U22U33U12U13U23
O10.0723 (13)0.0736 (12)0.0619 (12)−0.0209 (9)0.0365 (11)−0.0191 (9)
N10.101 (2)0.0679 (15)0.0548 (16)−0.0267 (14)0.0189 (15)−0.0060 (12)
C10.070 (2)0.091 (2)0.0567 (19)−0.0302 (16)0.0055 (16)−0.0115 (16)
O20.0662 (13)0.0869 (13)0.0788 (15)−0.0163 (10)0.0395 (11)−0.0206 (10)
N20.0530 (12)0.0506 (11)0.0433 (12)−0.0092 (9)0.0136 (9)−0.0091 (8)
C20.0580 (17)0.0734 (17)0.0593 (18)−0.0111 (13)0.0120 (14)−0.0043 (14)
O30.0852 (15)0.0810 (13)0.0592 (13)−0.0318 (11)0.0332 (12)−0.0226 (10)
N30.0677 (16)0.0679 (14)0.0659 (16)−0.0140 (11)0.0201 (13)−0.0044 (12)
C30.0562 (16)0.0519 (13)0.0396 (14)−0.0060 (11)0.0122 (12)0.0012 (10)
N40.0539 (13)0.0534 (11)0.0528 (13)−0.0095 (9)0.0181 (10)−0.0038 (9)
C40.0661 (17)0.0486 (13)0.0466 (15)−0.0039 (11)0.0126 (13)−0.0002 (11)
C50.094 (2)0.0542 (15)0.0542 (17)−0.0023 (14)0.0240 (16)0.0021 (12)
C60.0523 (15)0.0524 (14)0.0472 (15)−0.0070 (11)0.0130 (12)0.0000 (11)
C70.0471 (14)0.0471 (12)0.0387 (13)−0.0033 (10)0.0110 (11)−0.0035 (10)
C80.0473 (14)0.0605 (14)0.0546 (16)−0.0063 (11)0.0176 (12)−0.0122 (12)
C90.0536 (15)0.0536 (13)0.0558 (16)−0.0037 (11)0.0198 (13)−0.0126 (11)
C100.071 (2)0.0572 (15)0.0680 (19)−0.0055 (13)0.0215 (16)−0.0059 (13)
C110.0575 (16)0.0543 (14)0.0620 (17)0.0015 (11)0.0206 (14)−0.0006 (12)
C120.0530 (16)0.0498 (13)0.0489 (15)−0.0001 (10)0.0123 (12)0.0032 (11)
C130.0532 (16)0.0585 (15)0.0693 (19)−0.0023 (12)0.0219 (14)−0.0072 (13)
C140.0575 (18)0.0773 (18)0.075 (2)−0.0038 (14)0.0213 (15)−0.0022 (15)
C150.0544 (16)0.0547 (14)0.0558 (17)−0.0018 (11)0.0171 (13)−0.0006 (12)
C160.0444 (14)0.0488 (13)0.0488 (15)−0.0018 (10)0.0121 (11)0.0030 (11)
C170.0500 (15)0.0582 (14)0.0600 (17)−0.0005 (11)0.0188 (13)−0.0058 (12)
C180.0470 (15)0.0604 (15)0.0599 (17)−0.0030 (11)0.0194 (13)−0.0031 (12)
O1—C61.232 (3)C5—H50.9500
N1—C11.327 (4)C7—C81.372 (3)
N1—C51.335 (4)C7—C91.380 (3)
C1—C21.375 (4)C8—C9i1.383 (3)
C1—H10.9500C8—H80.9500
O2—C151.223 (3)C9—C8i1.383 (3)
N2—C61.343 (3)C9—H90.9500
N2—C71.420 (3)C10—C111.375 (3)
N2—H2A0.8800C10—H100.9500
C2—C31.383 (3)C11—C121.377 (3)
C2—H20.9500C11—H110.9500
O3—H150.94 (4)C12—C131.373 (3)
O3—H160.87 (4)C12—C151.506 (3)
N3—C101.327 (3)C13—C141.378 (4)
N3—C141.333 (3)C13—H130.9500
C3—C41.379 (3)C14—H140.9500
C3—C61.498 (3)C16—C171.375 (3)
N4—C151.348 (3)C16—C181.387 (3)
N4—C161.422 (3)C17—C18ii1.382 (3)
N4—H4A0.8800C17—H170.9500
C4—C51.375 (3)C18—C17ii1.382 (3)
C4—H40.9500C18—H180.9500
C1—N1—C5116.7 (2)C9i—C8—H8120.2
N1—C1—C2124.0 (3)C7—C9—C8i121.2 (2)
N1—C1—H1118.0C7—C9—H9119.4
C2—C1—H1118.0C8i—C9—H9119.4
C6—N2—C7127.0 (2)N3—C10—C11123.5 (2)
C6—N2—H2A116.5N3—C10—H10118.2
C7—N2—H2A116.5C11—C10—H10118.2
C1—C2—C3118.8 (3)C10—C11—C12119.2 (2)
C1—C2—H2120.6C10—C11—H11120.4
C3—C2—H2120.6C12—C11—H11120.4
H15—O3—H16100 (3)C13—C12—C11118.0 (2)
C10—N3—C14116.8 (2)C13—C12—C15123.2 (2)
C4—C3—C2117.9 (2)C11—C12—C15118.7 (2)
C4—C3—C6123.4 (2)C12—C13—C14119.0 (2)
C2—C3—C6118.6 (2)C12—C13—H13120.5
C15—N4—C16126.6 (2)C14—C13—H13120.5
C15—N4—H4A116.7N3—C14—C13123.5 (3)
C16—N4—H4A116.7N3—C14—H14118.3
C5—C4—C3119.1 (3)C13—C14—H14118.3
C5—C4—H4120.5O2—C15—N4124.2 (2)
C3—C4—H4120.5O2—C15—C12120.4 (2)
N1—C5—C4123.5 (3)N4—C15—C12115.4 (2)
N1—C5—H5118.2C17—C16—C18118.9 (2)
C4—C5—H5118.2C17—C16—N4123.8 (2)
O1—C6—N2124.6 (2)C18—C16—N4117.3 (2)
O1—C6—C3120.3 (2)C16—C17—C18ii120.2 (2)
N2—C6—C3115.1 (2)C16—C17—H17119.9
C8—C7—C9119.1 (2)C18ii—C17—H17119.9
C8—C7—N2123.6 (2)C17ii—C18—C16120.8 (2)
C9—C7—N2117.2 (2)C17ii—C18—H18119.6
C7—C8—C9i119.6 (2)C16—C18—H18119.6
C7—C8—H8120.2
D—H···AD—HH···AD···AD—H···A
N2—H2A···O3iii0.882.002.847 (3)160
N4—H4A···O10.882.122.968 (3)161
O3—H15···N10.94 (4)1.92 (4)2.845 (3)168 (3)
O3—H16···N3iv0.87 (4)2.01 (4)2.849 (3)162 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O3i0.882.002.847 (3)160
N4—H4A⋯O10.882.122.968 (3)161
O3—H15⋯N10.94 (4)1.92 (4)2.845 (3)168 (3)
O3—H16⋯N3ii0.87 (4)2.01 (4)2.849 (3)162 (4)

Symmetry codes: (i) ; (ii) .

  3 in total

1.  Ring-opening polymerization of gold macrocycles and self-assembly of a coordination polymer through hydrogen-bonding.

Authors:  Tara J Burchell; Dana J Eisler; Michael C Jennings; Richard J Puddephatt
Journal:  Chem Commun (Camb)       Date:  2003-09-07       Impact factor: 6.222

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Self-assembly using dynamic coordination chemistry and hydrogen bonding: mercury(II) macrocycles, polymers and sheets.

Authors:  Tara J Burchell; Dana J Eisler; Richard J Puddephatt
Journal:  Inorg Chem       Date:  2004-09-06       Impact factor: 5.165

  3 in total
  1 in total

1.  Tetra-kis(nitrato-κ(2)O,O')[N,N'-1,4-phenyl-enebis(pyridine-4-carboxamide)-κN(1)](4-{[4-(pyridine-4-carboxamido-κN(1))phen-yl]carbamo-yl}pyridin-1-ium)neodymium(III).

Authors:  Yun Zhang; Jiao-Jiao Hao; Hu Zhou
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-21
  1 in total

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