| Literature DB >> 21583459 |
Abstract
The title mol-ecule, C(14)H(19)NO(6), was synthesized by the reaction of glyoxylic acid, ethyl acetoacetate and NH(4)HCO(3). In the crystal structure, the dihydro-pyridine ring adopts an asymmetric boat-type conformation with the C atom bearing the carboxyl group showing a signficantly larger deviation [0.325 (2) Å] from the base plane then the N atom [0.137 (2) Å]. One of the ethyl groups is disordered over two positions with occupancies of 0.741 (10) and 0.259 (10). The crystal is stabilized by strong inter-molecular hydrogen bonds. N-H⋯O inter-actions form infinite chains in the a direction. O-H⋯O hydrogen bonds form typical carboxylic acid dimers, which link the N-H⋯O chains into a ladder-type double chain.Entities:
Year: 2009 PMID: 21583459 PMCID: PMC2977273 DOI: 10.1107/S1600536809024945
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C14H19NO6 | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 2034 reflections | |
| θ = 2.3–27.5° | |
| µ = 0.10 mm−1 | |
| α = 104.10 (3)° | |
| β = 97.808 (9)° | Block, colourless |
| γ = 111.658 (10)° | 0.36 × 0.30 × 0.28 mm |
| Rigaku SCXmini diffractometer | 2969 independent reflections |
| Radiation source: fine-focus sealed tube | 2241 reflections with |
| graphite | |
| Detector resolution: 13.6612 pixels mm-1 | θmax = 26.0°, θmin = 3.0° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 6950 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2969 reflections | (Δ/σ)max < 0.001 |
| 199 parameters | Δρmax = 0.29 e Å−3 |
| 2 restraints | Δρmin = −0.24 e Å−3 |
| Experimental. 1H NMR (DMSO-d6, p.p.m.): δ 1.17 (t, J = 7.0 Hz, 6H, CH2CH3), 2.21 (s, 6H, Me), 4.07 (m, J = 7.0 Hz, 4H, CH2CH3), 4.58 (s, 1H, CH), 8.84 (s, 1H, NH), 11.89 (S, 1H, OH). 13 C NMR (DMSO-d6, p.p.m.): δ 14.72 (CH2CH3), 18.39 (CH3), 39.71 (CH in dihydropyridine ring), 59.55 (CH2), 97.68, 146.27 (quaternary C in dihydropyridine ring), 167.33 (CO), 175.02 (COOH). |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| C1 | 0.5752 (3) | 0.3833 (2) | 0.24556 (18) | 0.0403 (5) | |
| H1A | 0.4891 | 0.4029 | 0.2968 | 0.048* | |
| C2 | 0.5338 (3) | 0.4308 (2) | 0.13568 (18) | 0.0418 (5) | |
| C3 | 0.7927 (3) | 0.4825 (2) | 0.31506 (19) | 0.0471 (5) | |
| C4 | 0.9329 (3) | 0.4276 (3) | 0.29898 (19) | 0.0482 (5) | |
| C5 | 0.6783 (3) | 0.1670 (2) | 0.19748 (19) | 0.0447 (5) | |
| C6 | 0.5295 (3) | 0.2141 (2) | 0.21075 (17) | 0.0403 (5) | |
| C7 | 1.1547 (3) | 0.5129 (3) | 0.3518 (3) | 0.0700 (7) | |
| H7A | 1.1858 | 0.6168 | 0.3980 | 0.105* | |
| H7B | 1.2223 | 0.5136 | 0.2887 | 0.105* | |
| H7C | 1.1974 | 0.4627 | 0.4026 | 0.105* | |
| C8 | 0.8460 (4) | 0.6388 (3) | 0.3946 (2) | 0.0691 (7) | |
| C9 | 0.7022 (9) | 0.7955 (6) | 0.5064 (4) | 0.0796 (16) | 0.742 (10) |
| H9A | 0.8340 | 0.8514 | 0.5609 | 0.096* | 0.742 (10) |
| H9B | 0.6041 | 0.7752 | 0.5532 | 0.096* | 0.742 (10) |
| C10 | 0.6670 (9) | 0.8858 (5) | 0.4323 (6) | 0.109 (2) | 0.742 (10) |
| H10D | 0.6721 | 0.9802 | 0.4824 | 0.164* | 0.742 (10) |
| H10E | 0.5379 | 0.8281 | 0.3771 | 0.164* | 0.742 (10) |
| H10F | 0.7678 | 0.9085 | 0.3887 | 0.164* | 0.742 (10) |
| C11 | 0.6588 (4) | 0.0046 (3) | 0.1497 (3) | 0.0639 (7) | |
| H11A | 0.5206 | −0.0659 | 0.1283 | 0.096* | |
| H11B | 0.7320 | −0.0178 | 0.2100 | 0.096* | |
| H11C | 0.7114 | −0.0059 | 0.0804 | 0.096* | |
| C12 | 0.3169 (3) | 0.1123 (2) | 0.18269 (19) | 0.0439 (5) | |
| C13 | 0.0631 (4) | −0.1451 (3) | 0.1230 (3) | 0.0734 (8) | |
| H13A | −0.0118 | −0.1280 | 0.0588 | 0.088* | |
| H13B | 0.0062 | −0.1315 | 0.1913 | 0.088* | |
| C14 | 0.0555 (5) | −0.3023 (3) | 0.0839 (4) | 0.0916 (11) | |
| H14A | −0.0808 | −0.3768 | 0.0618 | 0.137* | |
| H14B | 0.1301 | −0.3177 | 0.1482 | 0.137* | |
| H14C | 0.1121 | −0.3142 | 0.0164 | 0.137* | |
| C9' | 0.7854 (18) | 0.8432 (14) | 0.4818 (12) | 0.065 (4)* | 0.258 (10) |
| H9'A | 0.8895 | 0.8831 | 0.5551 | 0.078* | 0.258 (10) |
| H9'B | 0.8364 | 0.8910 | 0.4238 | 0.078* | 0.258 (10) |
| C10' | 0.5997 (16) | 0.8597 (14) | 0.5033 (11) | 0.070 (4)* | 0.258 (10) |
| H10A | 0.6312 | 0.9662 | 0.5417 | 0.105* | 0.258 (10) |
| H10B | 0.5459 | 0.8009 | 0.5538 | 0.105* | 0.258 (10) |
| H10C | 0.5030 | 0.8227 | 0.4283 | 0.105* | 0.258 (10) |
| N1 | 0.8729 (2) | 0.2761 (2) | 0.23053 (18) | 0.0502 (5) | |
| H1D | 0.9620 | 0.2484 | 0.2073 | 0.060* | |
| O1 | 0.5162 (3) | 0.35326 (19) | 0.03480 (14) | 0.0690 (5) | |
| O2 | 0.5283 (3) | 0.56518 (19) | 0.15897 (15) | 0.0760 (6) | |
| H2A | 0.5144 | 0.5865 | 0.0969 | 0.114* | |
| O3 | 1.0104 (4) | 0.7427 (3) | 0.4291 (3) | 0.1314 (12) | |
| O4 | 0.6867 (3) | 0.6538 (2) | 0.42828 (16) | 0.0787 (6) | |
| O5 | 0.1878 (2) | 0.16074 (18) | 0.18443 (16) | 0.0603 (5) | |
| O6 | 0.2733 (2) | −0.03741 (17) | 0.15535 (18) | 0.0639 (5) |
| C1 | 0.0385 (10) | 0.0393 (10) | 0.0487 (11) | 0.0212 (8) | 0.0147 (8) | 0.0137 (8) |
| C2 | 0.0404 (10) | 0.0340 (10) | 0.0518 (12) | 0.0200 (8) | 0.0104 (8) | 0.0091 (9) |
| C3 | 0.0447 (11) | 0.0448 (11) | 0.0502 (12) | 0.0201 (9) | 0.0089 (9) | 0.0117 (9) |
| C4 | 0.0402 (11) | 0.0529 (12) | 0.0527 (12) | 0.0210 (9) | 0.0110 (9) | 0.0169 (10) |
| C5 | 0.0443 (11) | 0.0453 (11) | 0.0554 (12) | 0.0265 (9) | 0.0186 (9) | 0.0191 (9) |
| C6 | 0.0391 (10) | 0.0404 (10) | 0.0485 (11) | 0.0221 (9) | 0.0143 (8) | 0.0159 (9) |
| C7 | 0.0421 (12) | 0.0737 (17) | 0.0839 (18) | 0.0226 (12) | 0.0055 (11) | 0.0162 (14) |
| C8 | 0.0668 (16) | 0.0540 (14) | 0.0696 (16) | 0.0268 (13) | −0.0015 (12) | −0.0009 (12) |
| C9 | 0.102 (4) | 0.070 (3) | 0.062 (2) | 0.047 (3) | 0.017 (2) | −0.004 (2) |
| C10 | 0.120 (4) | 0.052 (2) | 0.130 (5) | 0.029 (3) | 0.012 (4) | 0.007 (3) |
| C11 | 0.0567 (14) | 0.0494 (13) | 0.0981 (19) | 0.0345 (12) | 0.0273 (13) | 0.0212 (13) |
| C12 | 0.0423 (11) | 0.0406 (11) | 0.0555 (12) | 0.0228 (9) | 0.0169 (9) | 0.0160 (9) |
| C13 | 0.0475 (13) | 0.0486 (14) | 0.124 (2) | 0.0173 (11) | 0.0306 (14) | 0.0259 (15) |
| C14 | 0.0775 (19) | 0.0460 (14) | 0.148 (3) | 0.0191 (14) | 0.043 (2) | 0.0279 (17) |
| N1 | 0.0374 (9) | 0.0496 (10) | 0.0691 (12) | 0.0240 (8) | 0.0191 (8) | 0.0161 (9) |
| O1 | 0.1177 (15) | 0.0498 (9) | 0.0501 (10) | 0.0486 (10) | 0.0179 (9) | 0.0143 (8) |
| O2 | 0.1359 (18) | 0.0542 (10) | 0.0573 (10) | 0.0630 (12) | 0.0200 (10) | 0.0166 (8) |
| O3 | 0.0760 (15) | 0.0632 (14) | 0.184 (3) | 0.0120 (12) | −0.0075 (16) | −0.0318 (16) |
| O4 | 0.0949 (14) | 0.0754 (13) | 0.0623 (11) | 0.0545 (11) | 0.0071 (10) | −0.0064 (9) |
| O5 | 0.0400 (8) | 0.0500 (9) | 0.0941 (13) | 0.0261 (7) | 0.0178 (8) | 0.0163 (8) |
| O6 | 0.0432 (8) | 0.0396 (8) | 0.1140 (14) | 0.0194 (7) | 0.0259 (9) | 0.0266 (9) |
| C1—C6 | 1.510 (3) | C10—H10E | 0.9600 |
| C1—C2 | 1.524 (3) | C10—H10F | 0.9600 |
| C1—C3 | 1.528 (3) | C11—H11A | 0.9600 |
| C1—H1A | 0.9800 | C11—H11B | 0.9600 |
| C2—O1 | 1.217 (3) | C11—H11C | 0.9600 |
| C2—O2 | 1.304 (2) | C12—O5 | 1.222 (2) |
| C3—C4 | 1.357 (3) | C12—O6 | 1.332 (2) |
| C3—C8 | 1.472 (3) | C13—O6 | 1.462 (3) |
| C4—N1 | 1.383 (3) | C13—C14 | 1.483 (4) |
| C4—C7 | 1.505 (3) | C13—H13A | 0.9700 |
| C5—C6 | 1.363 (3) | C13—H13B | 0.9700 |
| C5—N1 | 1.378 (3) | C14—H14A | 0.9600 |
| C5—C11 | 1.508 (3) | C14—H14B | 0.9600 |
| C6—C12 | 1.465 (3) | C14—H14C | 0.9600 |
| C7—H7A | 0.9600 | C9'—C10' | 1.499 (15) |
| C7—H7B | 0.9600 | C9'—O4 | 1.649 (12) |
| C7—H7C | 0.9600 | C9'—H9'A | 0.9700 |
| C8—O3 | 1.204 (3) | C9'—H9'B | 0.9700 |
| C8—O4 | 1.348 (3) | C10'—H10A | 0.9600 |
| C9—O4 | 1.432 (4) | C10'—H10B | 0.9600 |
| C9—C10 | 1.461 (8) | C10'—H10C | 0.9600 |
| C9—H9A | 0.9700 | N1—H1D | 0.8600 |
| C9—H9B | 0.9700 | O2—H2A | 0.8200 |
| C10—H10D | 0.9600 | ||
| C6—C1—C2 | 111.10 (16) | H10E—C10—H10F | 109.5 |
| C6—C1—C3 | 111.42 (16) | C5—C11—H11A | 109.5 |
| C2—C1—C3 | 108.83 (16) | C5—C11—H11B | 109.5 |
| C6—C1—H1A | 108.5 | H11A—C11—H11B | 109.5 |
| C2—C1—H1A | 108.5 | C5—C11—H11C | 109.5 |
| C3—C1—H1A | 108.5 | H11A—C11—H11C | 109.5 |
| O1—C2—O2 | 122.4 (2) | H11B—C11—H11C | 109.5 |
| O1—C2—C1 | 122.99 (17) | O5—C12—O6 | 122.05 (19) |
| O2—C2—C1 | 114.51 (17) | O5—C12—C6 | 122.53 (19) |
| C4—C3—C8 | 121.5 (2) | O6—C12—C6 | 115.42 (17) |
| C4—C3—C1 | 119.72 (19) | O6—C13—C14 | 106.9 (2) |
| C8—C3—C1 | 118.72 (19) | O6—C13—H13A | 110.3 |
| C3—C4—N1 | 119.07 (18) | C14—C13—H13A | 110.3 |
| C3—C4—C7 | 127.0 (2) | O6—C13—H13B | 110.3 |
| N1—C4—C7 | 113.86 (19) | C14—C13—H13B | 110.3 |
| C6—C5—N1 | 118.93 (18) | H13A—C13—H13B | 108.6 |
| C6—C5—C11 | 127.8 (2) | C13—C14—H14A | 109.5 |
| N1—C5—C11 | 113.28 (17) | C13—C14—H14B | 109.5 |
| C5—C6—C12 | 125.35 (19) | H14A—C14—H14B | 109.5 |
| C5—C6—C1 | 120.07 (18) | C13—C14—H14C | 109.5 |
| C12—C6—C1 | 114.31 (16) | H14A—C14—H14C | 109.5 |
| C4—C7—H7A | 109.5 | H14B—C14—H14C | 109.5 |
| C4—C7—H7B | 109.5 | C10'—C9'—O4 | 97.3 (9) |
| H7A—C7—H7B | 109.5 | C10'—C9'—H9'A | 112.3 |
| C4—C7—H7C | 109.5 | O4—C9'—H9'A | 112.3 |
| H7A—C7—H7C | 109.5 | C10'—C9'—H9'B | 112.3 |
| H7B—C7—H7C | 109.5 | O4—C9'—H9'B | 112.3 |
| O3—C8—O4 | 122.4 (3) | H9'A—C9'—H9'B | 109.9 |
| O3—C8—C3 | 125.8 (3) | C9'—C10'—H10A | 109.5 |
| O4—C8—C3 | 111.8 (2) | C9'—C10'—H10B | 109.5 |
| O4—C9—C10 | 107.7 (4) | H10A—C10'—H10B | 109.5 |
| O4—C9—H9A | 110.2 | C9'—C10'—H10C | 109.5 |
| C10—C9—H9A | 110.2 | H10A—C10'—H10C | 109.5 |
| O4—C9—H9B | 110.2 | H10B—C10'—H10C | 109.5 |
| C10—C9—H9B | 110.2 | C5—N1—C4 | 123.75 (16) |
| H9A—C9—H9B | 108.5 | C5—N1—H1D | 118.1 |
| C9—C10—H10D | 109.5 | C4—N1—H1D | 118.1 |
| C9—C10—H10E | 109.5 | C2—O2—H2A | 109.5 |
| H10D—C10—H10E | 109.5 | C8—O4—C9 | 121.9 (3) |
| C9—C10—H10F | 109.5 | C8—O4—C9' | 97.6 (5) |
| H10D—C10—H10F | 109.5 | C12—O6—C13 | 117.96 (17) |
| C6—C1—C2—O1 | −17.2 (3) | C1—C3—C8—O3 | −158.8 (3) |
| C3—C1—C2—O1 | 105.9 (2) | C4—C3—C8—O4 | −160.1 (2) |
| C6—C1—C2—O2 | 166.01 (18) | C1—C3—C8—O4 | 22.5 (3) |
| C3—C1—C2—O2 | −70.9 (2) | C5—C6—C12—O5 | −172.2 (2) |
| C6—C1—C3—C4 | 25.8 (3) | C1—C6—C12—O5 | 1.8 (3) |
| C2—C1—C3—C4 | −97.1 (2) | C5—C6—C12—O6 | 8.0 (3) |
| C6—C1—C3—C8 | −156.7 (2) | C1—C6—C12—O6 | −177.98 (17) |
| C2—C1—C3—C8 | 80.4 (2) | C6—C5—N1—C4 | 13.9 (3) |
| C8—C3—C4—N1 | 175.1 (2) | C11—C5—N1—C4 | −166.0 (2) |
| C1—C3—C4—N1 | −7.5 (3) | C3—C4—N1—C5 | −14.1 (3) |
| C8—C3—C4—C7 | −2.6 (4) | C7—C4—N1—C5 | 163.9 (2) |
| C1—C3—C4—C7 | 174.8 (2) | O3—C8—O4—C9 | 0.8 (5) |
| N1—C5—C6—C12 | −178.35 (18) | C3—C8—O4—C9 | 179.6 (3) |
| C11—C5—C6—C12 | 1.5 (4) | O3—C8—O4—C9' | 15.3 (6) |
| N1—C5—C6—C1 | 8.0 (3) | C3—C8—O4—C9' | −165.9 (5) |
| C11—C5—C6—C1 | −172.2 (2) | C10—C9—O4—C8 | 89.7 (5) |
| C2—C1—C6—C5 | 95.5 (2) | C10'—C9'—O4—C8 | 172.6 (8) |
| C3—C1—C6—C5 | −26.0 (3) | O5—C12—O6—C13 | 2.0 (3) |
| C2—C1—C6—C12 | −78.8 (2) | C6—C12—O6—C13 | −178.2 (2) |
| C3—C1—C6—C12 | 159.62 (17) | C14—C13—O6—C12 | 173.7 (2) |
| C4—C3—C8—O3 | 18.6 (5) |
| H··· | ||||
| N1—H1D···O5i | 0.86 | 2.17 | 3.018 (2) | 167 |
| O2—H2A···O1ii | 0.82 | 1.82 | 2.641 (2) | 176 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.86 | 2.17 | 3.018 (2) | 167 |
| O2—H2 | 0.82 | 1.82 | 2.641 (2) | 176 |
Symmetry codes: (i) ; (ii) .