Literature DB >> 21583459

3,5-Bis(ethoxy-carbon-yl)-2,6-dimethyl-1,4-dihydro-pyridine-4-carboxylic acid.

De-Hong Wu1, Ling Hu.   

Abstract

The title mol-ecule, C(14)H(19)NO(6), was synthesized by the reaction of glyoxylic acid, ethyl acetoacetate and NH(4)HCO(3). In the crystal structure, the dihydro-pyridine ring adopts an asymmetric boat-type conformation with the C atom bearing the carboxyl group showing a signficantly larger deviation [0.325 (2) Å] from the base plane then the N atom [0.137 (2) Å]. One of the ethyl groups is disordered over two positions with occupancies of 0.741 (10) and 0.259 (10). The crystal is stabilized by strong inter-molecular hydrogen bonds. N-H⋯O inter-actions form infinite chains in the a direction. O-H⋯O hydrogen bonds form typical carboxylic acid dimers, which link the N-H⋯O chains into a ladder-type double chain.

Entities:  

Year:  2009        PMID: 21583459      PMCID: PMC2977273          DOI: 10.1107/S1600536809024945

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the electrophysiological activity of 1,4-dipyridine derivatives, see: Fleckenstein (1977 ▶); Cutshall et al. (2002 ▶). For their biological activity, see: Triggle et al. (1980 ▶); Fossheim et al. (1982 ▶); Heinrich et al. (2004 ▶); Henry (2004 ▶).

Experimental

Crystal data

C14H19NO6 M = 297.30 Triclinic, a = 7.445 (4) Å b = 9.864 (5) Å c = 11.908 (2) Å α = 104.10 (3)° β = 97.808 (9)° γ = 111.658 (10)° V = 763.2 (6) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 291 K 0.36 × 0.30 × 0.28 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.960, T max = 0.970 6950 measured reflections 2969 independent reflections 2241 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.063 wR(F 2) = 0.197 S = 1.08 2969 reflections 199 parameters 2 restraints H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.24 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, New_Global_Publ_Block. DOI: 10.1107/S1600536809024945/kj2129sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809024945/kj2129Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H19NO6Z = 2
Mr = 297.30F(000) = 316
Triclinic, P1Dx = 1.294 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.445 (4) ÅCell parameters from 2034 reflections
b = 9.864 (5) Åθ = 2.3–27.5°
c = 11.908 (2) ŵ = 0.10 mm1
α = 104.10 (3)°T = 291 K
β = 97.808 (9)°Block, colourless
γ = 111.658 (10)°0.36 × 0.30 × 0.28 mm
V = 763.2 (6) Å3
Rigaku SCXmini diffractometer2969 independent reflections
Radiation source: fine-focus sealed tube2241 reflections with I > 2σ(I)
graphiteRint = 0.029
Detector resolution: 13.6612 pixels mm-1θmax = 26.0°, θmin = 3.0°
ω scansh = −9→9
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −12→12
Tmin = 0.960, Tmax = 0.970l = −14→14
6950 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.063Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.197H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.115P)2 + 0.1066P] where P = (Fo2 + 2Fc2)/3
2969 reflections(Δ/σ)max < 0.001
199 parametersΔρmax = 0.29 e Å3
2 restraintsΔρmin = −0.24 e Å3
Experimental. 1H NMR (DMSO-d6, p.p.m.): δ 1.17 (t, J = 7.0 Hz, 6H, CH2CH3), 2.21 (s, 6H, Me), 4.07 (m, J = 7.0 Hz, 4H, CH2CH3), 4.58 (s, 1H, CH), 8.84 (s, 1H, NH), 11.89 (S, 1H, OH). 13 C NMR (DMSO-d6, p.p.m.): δ 14.72 (CH2CH3), 18.39 (CH3), 39.71 (CH in dihydropyridine ring), 59.55 (CH2), 97.68, 146.27 (quaternary C in dihydropyridine ring), 167.33 (CO), 175.02 (COOH).
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.5752 (3)0.3833 (2)0.24556 (18)0.0403 (5)
H1A0.48910.40290.29680.048*
C20.5338 (3)0.4308 (2)0.13568 (18)0.0418 (5)
C30.7927 (3)0.4825 (2)0.31506 (19)0.0471 (5)
C40.9329 (3)0.4276 (3)0.29898 (19)0.0482 (5)
C50.6783 (3)0.1670 (2)0.19748 (19)0.0447 (5)
C60.5295 (3)0.2141 (2)0.21075 (17)0.0403 (5)
C71.1547 (3)0.5129 (3)0.3518 (3)0.0700 (7)
H7A1.18580.61680.39800.105*
H7B1.22230.51360.28870.105*
H7C1.19740.46270.40260.105*
C80.8460 (4)0.6388 (3)0.3946 (2)0.0691 (7)
C90.7022 (9)0.7955 (6)0.5064 (4)0.0796 (16)0.742 (10)
H9A0.83400.85140.56090.096*0.742 (10)
H9B0.60410.77520.55320.096*0.742 (10)
C100.6670 (9)0.8858 (5)0.4323 (6)0.109 (2)0.742 (10)
H10D0.67210.98020.48240.164*0.742 (10)
H10E0.53790.82810.37710.164*0.742 (10)
H10F0.76780.90850.38870.164*0.742 (10)
C110.6588 (4)0.0046 (3)0.1497 (3)0.0639 (7)
H11A0.5206−0.06590.12830.096*
H11B0.7320−0.01780.21000.096*
H11C0.7114−0.00590.08040.096*
C120.3169 (3)0.1123 (2)0.18269 (19)0.0439 (5)
C130.0631 (4)−0.1451 (3)0.1230 (3)0.0734 (8)
H13A−0.0118−0.12800.05880.088*
H13B0.0062−0.13150.19130.088*
C140.0555 (5)−0.3023 (3)0.0839 (4)0.0916 (11)
H14A−0.0808−0.37680.06180.137*
H14B0.1301−0.31770.14820.137*
H14C0.1121−0.31420.01640.137*
C9'0.7854 (18)0.8432 (14)0.4818 (12)0.065 (4)*0.258 (10)
H9'A0.88950.88310.55510.078*0.258 (10)
H9'B0.83640.89100.42380.078*0.258 (10)
C10'0.5997 (16)0.8597 (14)0.5033 (11)0.070 (4)*0.258 (10)
H10A0.63120.96620.54170.105*0.258 (10)
H10B0.54590.80090.55380.105*0.258 (10)
H10C0.50300.82270.42830.105*0.258 (10)
N10.8729 (2)0.2761 (2)0.23053 (18)0.0502 (5)
H1D0.96200.24840.20730.060*
O10.5162 (3)0.35326 (19)0.03480 (14)0.0690 (5)
O20.5283 (3)0.56518 (19)0.15897 (15)0.0760 (6)
H2A0.51440.58650.09690.114*
O31.0104 (4)0.7427 (3)0.4291 (3)0.1314 (12)
O40.6867 (3)0.6538 (2)0.42828 (16)0.0787 (6)
O50.1878 (2)0.16074 (18)0.18443 (16)0.0603 (5)
O60.2733 (2)−0.03741 (17)0.15535 (18)0.0639 (5)
U11U22U33U12U13U23
C10.0385 (10)0.0393 (10)0.0487 (11)0.0212 (8)0.0147 (8)0.0137 (8)
C20.0404 (10)0.0340 (10)0.0518 (12)0.0200 (8)0.0104 (8)0.0091 (9)
C30.0447 (11)0.0448 (11)0.0502 (12)0.0201 (9)0.0089 (9)0.0117 (9)
C40.0402 (11)0.0529 (12)0.0527 (12)0.0210 (9)0.0110 (9)0.0169 (10)
C50.0443 (11)0.0453 (11)0.0554 (12)0.0265 (9)0.0186 (9)0.0191 (9)
C60.0391 (10)0.0404 (10)0.0485 (11)0.0221 (9)0.0143 (8)0.0159 (9)
C70.0421 (12)0.0737 (17)0.0839 (18)0.0226 (12)0.0055 (11)0.0162 (14)
C80.0668 (16)0.0540 (14)0.0696 (16)0.0268 (13)−0.0015 (12)−0.0009 (12)
C90.102 (4)0.070 (3)0.062 (2)0.047 (3)0.017 (2)−0.004 (2)
C100.120 (4)0.052 (2)0.130 (5)0.029 (3)0.012 (4)0.007 (3)
C110.0567 (14)0.0494 (13)0.0981 (19)0.0345 (12)0.0273 (13)0.0212 (13)
C120.0423 (11)0.0406 (11)0.0555 (12)0.0228 (9)0.0169 (9)0.0160 (9)
C130.0475 (13)0.0486 (14)0.124 (2)0.0173 (11)0.0306 (14)0.0259 (15)
C140.0775 (19)0.0460 (14)0.148 (3)0.0191 (14)0.043 (2)0.0279 (17)
N10.0374 (9)0.0496 (10)0.0691 (12)0.0240 (8)0.0191 (8)0.0161 (9)
O10.1177 (15)0.0498 (9)0.0501 (10)0.0486 (10)0.0179 (9)0.0143 (8)
O20.1359 (18)0.0542 (10)0.0573 (10)0.0630 (12)0.0200 (10)0.0166 (8)
O30.0760 (15)0.0632 (14)0.184 (3)0.0120 (12)−0.0075 (16)−0.0318 (16)
O40.0949 (14)0.0754 (13)0.0623 (11)0.0545 (11)0.0071 (10)−0.0064 (9)
O50.0400 (8)0.0500 (9)0.0941 (13)0.0261 (7)0.0178 (8)0.0163 (8)
O60.0432 (8)0.0396 (8)0.1140 (14)0.0194 (7)0.0259 (9)0.0266 (9)
C1—C61.510 (3)C10—H10E0.9600
C1—C21.524 (3)C10—H10F0.9600
C1—C31.528 (3)C11—H11A0.9600
C1—H1A0.9800C11—H11B0.9600
C2—O11.217 (3)C11—H11C0.9600
C2—O21.304 (2)C12—O51.222 (2)
C3—C41.357 (3)C12—O61.332 (2)
C3—C81.472 (3)C13—O61.462 (3)
C4—N11.383 (3)C13—C141.483 (4)
C4—C71.505 (3)C13—H13A0.9700
C5—C61.363 (3)C13—H13B0.9700
C5—N11.378 (3)C14—H14A0.9600
C5—C111.508 (3)C14—H14B0.9600
C6—C121.465 (3)C14—H14C0.9600
C7—H7A0.9600C9'—C10'1.499 (15)
C7—H7B0.9600C9'—O41.649 (12)
C7—H7C0.9600C9'—H9'A0.9700
C8—O31.204 (3)C9'—H9'B0.9700
C8—O41.348 (3)C10'—H10A0.9600
C9—O41.432 (4)C10'—H10B0.9600
C9—C101.461 (8)C10'—H10C0.9600
C9—H9A0.9700N1—H1D0.8600
C9—H9B0.9700O2—H2A0.8200
C10—H10D0.9600
C6—C1—C2111.10 (16)H10E—C10—H10F109.5
C6—C1—C3111.42 (16)C5—C11—H11A109.5
C2—C1—C3108.83 (16)C5—C11—H11B109.5
C6—C1—H1A108.5H11A—C11—H11B109.5
C2—C1—H1A108.5C5—C11—H11C109.5
C3—C1—H1A108.5H11A—C11—H11C109.5
O1—C2—O2122.4 (2)H11B—C11—H11C109.5
O1—C2—C1122.99 (17)O5—C12—O6122.05 (19)
O2—C2—C1114.51 (17)O5—C12—C6122.53 (19)
C4—C3—C8121.5 (2)O6—C12—C6115.42 (17)
C4—C3—C1119.72 (19)O6—C13—C14106.9 (2)
C8—C3—C1118.72 (19)O6—C13—H13A110.3
C3—C4—N1119.07 (18)C14—C13—H13A110.3
C3—C4—C7127.0 (2)O6—C13—H13B110.3
N1—C4—C7113.86 (19)C14—C13—H13B110.3
C6—C5—N1118.93 (18)H13A—C13—H13B108.6
C6—C5—C11127.8 (2)C13—C14—H14A109.5
N1—C5—C11113.28 (17)C13—C14—H14B109.5
C5—C6—C12125.35 (19)H14A—C14—H14B109.5
C5—C6—C1120.07 (18)C13—C14—H14C109.5
C12—C6—C1114.31 (16)H14A—C14—H14C109.5
C4—C7—H7A109.5H14B—C14—H14C109.5
C4—C7—H7B109.5C10'—C9'—O497.3 (9)
H7A—C7—H7B109.5C10'—C9'—H9'A112.3
C4—C7—H7C109.5O4—C9'—H9'A112.3
H7A—C7—H7C109.5C10'—C9'—H9'B112.3
H7B—C7—H7C109.5O4—C9'—H9'B112.3
O3—C8—O4122.4 (3)H9'A—C9'—H9'B109.9
O3—C8—C3125.8 (3)C9'—C10'—H10A109.5
O4—C8—C3111.8 (2)C9'—C10'—H10B109.5
O4—C9—C10107.7 (4)H10A—C10'—H10B109.5
O4—C9—H9A110.2C9'—C10'—H10C109.5
C10—C9—H9A110.2H10A—C10'—H10C109.5
O4—C9—H9B110.2H10B—C10'—H10C109.5
C10—C9—H9B110.2C5—N1—C4123.75 (16)
H9A—C9—H9B108.5C5—N1—H1D118.1
C9—C10—H10D109.5C4—N1—H1D118.1
C9—C10—H10E109.5C2—O2—H2A109.5
H10D—C10—H10E109.5C8—O4—C9121.9 (3)
C9—C10—H10F109.5C8—O4—C9'97.6 (5)
H10D—C10—H10F109.5C12—O6—C13117.96 (17)
C6—C1—C2—O1−17.2 (3)C1—C3—C8—O3−158.8 (3)
C3—C1—C2—O1105.9 (2)C4—C3—C8—O4−160.1 (2)
C6—C1—C2—O2166.01 (18)C1—C3—C8—O422.5 (3)
C3—C1—C2—O2−70.9 (2)C5—C6—C12—O5−172.2 (2)
C6—C1—C3—C425.8 (3)C1—C6—C12—O51.8 (3)
C2—C1—C3—C4−97.1 (2)C5—C6—C12—O68.0 (3)
C6—C1—C3—C8−156.7 (2)C1—C6—C12—O6−177.98 (17)
C2—C1—C3—C880.4 (2)C6—C5—N1—C413.9 (3)
C8—C3—C4—N1175.1 (2)C11—C5—N1—C4−166.0 (2)
C1—C3—C4—N1−7.5 (3)C3—C4—N1—C5−14.1 (3)
C8—C3—C4—C7−2.6 (4)C7—C4—N1—C5163.9 (2)
C1—C3—C4—C7174.8 (2)O3—C8—O4—C90.8 (5)
N1—C5—C6—C12−178.35 (18)C3—C8—O4—C9179.6 (3)
C11—C5—C6—C121.5 (4)O3—C8—O4—C9'15.3 (6)
N1—C5—C6—C18.0 (3)C3—C8—O4—C9'−165.9 (5)
C11—C5—C6—C1−172.2 (2)C10—C9—O4—C889.7 (5)
C2—C1—C6—C595.5 (2)C10'—C9'—O4—C8172.6 (8)
C3—C1—C6—C5−26.0 (3)O5—C12—O6—C132.0 (3)
C2—C1—C6—C12−78.8 (2)C6—C12—O6—C13−178.2 (2)
C3—C1—C6—C12159.62 (17)C14—C13—O6—C12173.7 (2)
C4—C3—C8—O318.6 (5)
D—H···AD—HH···AD···AD—H···A
N1—H1D···O5i0.862.173.018 (2)167
O2—H2A···O1ii0.821.822.641 (2)176
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1D⋯O5i0.862.173.018 (2)167
O2—H2A⋯O1ii0.821.822.641 (2)176

Symmetry codes: (i) ; (ii) .

  5 in total

1.  Nicotinanilides as inhibitors of neutrophil chemotaxis.

Authors:  Neil S Cutshall; Kristin A Kucera; Rocky Ursino; John Latham; Nathan C Ihle
Journal:  Bioorg Med Chem Lett       Date:  2002-06-03       Impact factor: 2.823

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  Specific pharmacology of calcium in myocardium, cardiac pacemakers, and vascular smooth muscle.

Authors:  A Fleckenstein
Journal:  Annu Rev Pharmacol Toxicol       Date:  1977       Impact factor: 13.820

4.  Crystal structures of calcium channel antagonists: 2,6-dimethyl-3,5-dicarbomethoxy-4-[2-nitro-, 3-cyano-, 4-(dimethylamino)-, and 2,3,4,5,6-pentafluorophenyl]-1,4-dihydropyridine.

Authors:  A M Triggle; E Shefter; D J Triggle
Journal:  J Med Chem       Date:  1980-12       Impact factor: 7.446

5.  Crystal structures and pharmacological activity of calcium channel antagonists: 2,6-dimethyl-3,5-dicarbomethoxy-4-(unsubstituted, 2-methyl-, 4-methyl-, 3-nitro-, 4-nitro-, and 2,4-dinitrophenyl)-1,4-dihydropyridine.

Authors:  R Fossheim; K Svarteng; A Mostad; C Rømming; E Shefter; D J Triggle
Journal:  J Med Chem       Date:  1982-02       Impact factor: 7.446

  5 in total

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