Literature DB >> 21583454

Methyl 3-[(1-adamantylcarbon-yloxy)amino-carbon-yl]propanoate.

Joe Liu, Jack K Clegg, Rachel Codd.   

Abstract

In the title compound, C(16)H(23)NO(5), the H-N-O-C torsion angle is 98.6 (1)°, which is of a similar magnitude to other N,O-diacyl-hydroxy-lamines. The N-O distance is 1.4029 (14) Å, which is similar to the N-O distance in other n class="Chemical">N,O-diacyl-hydroxy-lamines. In the crystal, intermolecular N-H⋯O hydrogen bonds generate chains of molecules.

Entities:  

Year:  2009        PMID: 21583454      PMCID: PMC2977356          DOI: 10.1107/S1600536809024210

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of compounds related to N,O-diacyl­hydroxy­lamines, see: Pelto & Pratt (2008 ▶). For linear N,O-diacyl­hydroxy­lamines, see: Göttlicher & Ochsenreiter (1974 ▶); Schraml et al. (2004 ▶); Baert et al. (1984 ▶); Masui et al. (1983 ▶); Grassi et al. (2002 ▶); Buscemi et al. (2006 ▶). For cyclic N,O-diacyl­hydroxy­lamines, see: Kongprakaiwoot et al. (2008 ▶). For a precursor of the title compound, see: Liu et al. (2009 ▶).

Experimental

Crystal data

C16H23NO5 M = 309.35 Orthorhombic, a = 15.7837 (5) Å b = 21.0715 (7) Å c = 9.5341 (3) Å V = 3170.91 (18) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 150 K 0.30 × 0.20 × 0.15 mm

Data collection

Bruker APEXII-FR591 diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.851, T max = 0.981 22952 measured reflections 4586 independent reflections 2890 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.132 S = 1.04 4586 reflections 200 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker, 2003 ▶); cell refinement: SAINT (Bruker, 2003 ▶); data reduction: SAINT and XPREP (Bruker, 2003 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶), WinGX32 (Farrugia, 1999 ▶), POV-RAY (Cason, 2002 ▶) and WebLab ViewerPro (Molecular Simulations, 2000 ▶); software used to prepare material for publication: enCIFer (Allen et al., 2004 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809024210/bg2266sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809024210/bg2266Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H23NO5F(000) = 1328
Mr = 309.35Dx = 1.296 Mg m3
Orthorhombic, PccnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ab 2acCell parameters from 3869 reflections
a = 15.7837 (5) Åθ = 2.8–30.0°
b = 21.0715 (7) ŵ = 0.10 mm1
c = 9.5341 (3) ÅT = 150 K
V = 3170.91 (18) Å3Block, colourless
Z = 80.30 × 0.20 × 0.15 mm
Bruker APEXII-FR591 diffractometer4586 independent reflections
Radiation source: rotating anode2890 reflections with I > 2σ(I)
graphiteRint = 0.036
ω+φ scansθmax = 30.0°, θmin = 3.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)h = −22→22
Tmin = 0.851, Tmax = 0.981k = −26→29
22952 measured reflectionsl = −13→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.132H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0599P)2 + 0.4178P] where P = (Fo2 + 2Fc2)/3
4586 reflections(Δ/σ)max < 0.001
200 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.25 e Å3
Experimental. The crystal was coated in Exxon Paratone N hydrocarbon oil and mounted on a thin mohair fibre attached to a copper pin. Upon mounting on the diffractometer, the crystal was quenched to 150(K) under a cold nitrogen gas stream supplied by an Oxford Cryosystems Cryostream and data were collected at this temperature.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.10511 (9)0.03188 (7)0.34190 (19)0.0397 (4)
H1A−0.12860.05210.42590.060*
H1B−0.1195−0.01340.34220.060*
H1C−0.12890.05200.25800.060*
C20.01542 (9)0.09834 (6)0.33007 (15)0.0282 (3)
C30.11059 (9)0.09992 (7)0.32346 (18)0.0347 (3)
H3A0.12930.08520.22990.042*
H3B0.13390.07040.39440.042*
C40.14536 (9)0.16607 (7)0.34972 (19)0.0395 (4)
H4A0.11740.19650.28550.047*
H4B0.13210.17900.44710.047*
C50.24014 (10)0.16868 (7)0.32743 (19)0.0381 (4)
C60.41331 (9)0.12429 (6)0.41915 (16)0.0285 (3)
C70.50576 (8)0.13370 (5)0.38462 (14)0.0217 (3)
C80.51335 (8)0.13881 (6)0.22281 (15)0.0264 (3)
H8A0.48890.10050.17820.032*
H8B0.48160.17630.18900.032*
C90.60700 (8)0.14499 (6)0.18337 (15)0.0272 (3)
H90.61240.14800.07910.033*
C100.64442 (8)0.20472 (6)0.25077 (15)0.0277 (3)
H10A0.70480.20900.22400.033*
H10B0.61370.24270.21670.033*
C110.63684 (8)0.20033 (6)0.40991 (15)0.0271 (3)
H110.66120.23950.45330.032*
C120.54299 (8)0.19452 (6)0.45073 (16)0.0269 (3)
H12A0.51140.23210.41690.032*
H12B0.53750.19260.55410.032*
C130.55512 (8)0.07550 (6)0.43587 (16)0.0279 (3)
H13A0.53130.03660.39300.034*
H13B0.54990.07180.53900.034*
C140.64869 (9)0.08217 (6)0.39547 (17)0.0321 (3)
H140.68080.04420.42920.039*
C150.68529 (9)0.14227 (7)0.46296 (18)0.0358 (4)
H15A0.68040.13940.56630.043*
H15B0.74600.14630.43880.043*
C160.65534 (9)0.08664 (6)0.23537 (17)0.0341 (4)
H16A0.71560.08980.20750.041*
H16B0.63130.04790.19220.041*
N10.28451 (7)0.17669 (6)0.44376 (15)0.0376 (3)
H10.25950.17860.52620.045*
O1−0.01378 (6)0.03915 (5)0.34139 (12)0.0391 (3)
O2−0.02969 (6)0.14408 (5)0.32255 (14)0.0420 (3)
O30.27389 (7)0.16496 (7)0.21147 (14)0.0595 (4)
O40.37279 (6)0.18202 (4)0.43133 (12)0.0349 (3)
O50.37653 (7)0.07535 (5)0.43361 (14)0.0506 (4)
U11U22U33U12U13U23
C10.0367 (8)0.0359 (7)0.0464 (10)−0.0018 (6)0.0100 (8)−0.0004 (7)
C20.0327 (7)0.0296 (6)0.0223 (7)0.0045 (5)0.0017 (6)−0.0017 (6)
C30.0298 (7)0.0359 (7)0.0384 (9)0.0084 (6)0.0016 (7)−0.0012 (6)
C40.0256 (7)0.0431 (8)0.0497 (11)0.0040 (6)−0.0011 (7)−0.0097 (7)
C50.0289 (7)0.0449 (8)0.0406 (10)0.0021 (6)0.0015 (8)−0.0026 (7)
C60.0271 (7)0.0301 (6)0.0281 (8)−0.0026 (5)0.0018 (6)0.0000 (6)
C70.0217 (6)0.0227 (6)0.0206 (7)−0.0040 (4)0.0008 (6)0.0009 (5)
C80.0281 (7)0.0299 (6)0.0211 (7)−0.0070 (5)−0.0028 (6)0.0010 (5)
C90.0313 (7)0.0299 (6)0.0203 (7)−0.0075 (5)0.0042 (6)0.0012 (5)
C100.0273 (6)0.0239 (6)0.0318 (9)−0.0060 (5)0.0018 (6)0.0058 (5)
C110.0270 (6)0.0253 (6)0.0289 (8)−0.0078 (5)−0.0055 (6)−0.0005 (5)
C120.0305 (7)0.0268 (6)0.0234 (8)−0.0031 (5)−0.0018 (6)−0.0027 (5)
C130.0306 (7)0.0238 (6)0.0294 (8)−0.0035 (5)0.0021 (7)0.0074 (5)
C140.0264 (7)0.0267 (6)0.0433 (10)0.0033 (5)−0.0003 (7)0.0103 (6)
C150.0259 (7)0.0435 (8)0.0382 (9)−0.0039 (6)−0.0099 (7)0.0099 (7)
C160.0304 (7)0.0259 (6)0.0459 (10)−0.0028 (5)0.0123 (7)−0.0021 (6)
N10.0215 (6)0.0512 (7)0.0401 (8)0.0015 (5)0.0037 (6)−0.0063 (6)
O10.0342 (5)0.0295 (5)0.0538 (8)0.0035 (4)0.0041 (5)−0.0012 (5)
O20.0312 (5)0.0327 (5)0.0621 (8)0.0069 (4)0.0012 (6)0.0032 (5)
O30.0365 (7)0.1062 (11)0.0358 (8)0.0027 (7)0.0009 (6)0.0004 (7)
O40.0213 (5)0.0350 (5)0.0485 (7)0.0011 (4)0.0008 (5)−0.0027 (5)
O50.0314 (5)0.0362 (6)0.0841 (10)−0.0085 (4)0.0154 (6)0.0045 (6)
C1—O11.4498 (17)C9—C161.5296 (19)
C1—H1A0.9800C9—C101.5316 (18)
C1—H1B0.9800C9—H91.0000
C1—H1C0.9800C10—C111.525 (2)
C2—O21.2005 (16)C10—H10A0.9900
C2—O11.3340 (16)C10—H10B0.9900
C2—C31.5038 (19)C11—C151.5289 (19)
C3—C41.519 (2)C11—C121.5364 (18)
C3—H3A0.9900C11—H111.0000
C3—H3B0.9900C12—H12A0.9900
C4—C51.512 (2)C12—H12B0.9900
C4—H4A0.9900C13—C141.5327 (19)
C4—H4B0.9900C13—H13A0.9900
C5—O31.230 (2)C13—H13B0.9900
C5—N11.322 (2)C14—C161.533 (2)
C6—O51.1913 (16)C14—C151.533 (2)
C6—O41.3792 (16)C14—H141.0000
C6—C71.5090 (18)C15—H15A0.9900
C7—C131.5329 (17)C15—H15B0.9900
C7—C121.5443 (17)C16—H16A0.9900
C7—C81.5510 (19)C16—H16B0.9900
C8—C91.5308 (18)N1—O41.4029 (14)
C8—H8A0.9900N1—H10.8800
C8—H8B0.9900
O1—C1—H1A109.5C11—C10—H10A109.7
O1—C1—H1B109.5C9—C10—H10A109.7
H1A—C1—H1B109.5C11—C10—H10B109.7
O1—C1—H1C109.5C9—C10—H10B109.7
H1A—C1—H1C109.5H10A—C10—H10B108.2
H1B—C1—H1C109.5C10—C11—C15109.78 (12)
O2—C2—O1123.41 (13)C10—C11—C12109.42 (11)
O2—C2—C3124.90 (13)C15—C11—C12109.55 (11)
O1—C2—C3111.67 (11)C10—C11—H11109.4
C2—C3—C4111.98 (11)C15—C11—H11109.4
C2—C3—H3A109.2C12—C11—H11109.4
C4—C3—H3A109.2C11—C12—C7109.24 (11)
C2—C3—H3B109.2C11—C12—H12A109.8
C4—C3—H3B109.2C7—C12—H12A109.8
H3A—C3—H3B107.9C11—C12—H12B109.8
C5—C4—C3111.57 (12)C7—C12—H12B109.8
C5—C4—H4A109.3H12A—C12—H12B108.3
C3—C4—H4A109.3C7—C13—C14109.65 (10)
C5—C4—H4B109.3C7—C13—H13A109.7
C3—C4—H4B109.3C14—C13—H13A109.7
H4A—C4—H4B108.0C7—C13—H13B109.7
O3—C5—N1122.19 (14)C14—C13—H13B109.7
O3—C5—C4123.55 (15)H13A—C13—H13B108.2
N1—C5—C4114.25 (15)C13—C14—C16108.77 (12)
O5—C6—O4121.84 (12)C13—C14—C15109.46 (12)
O5—C6—C7127.62 (12)C16—C14—C15109.96 (11)
O4—C6—C7110.54 (10)C13—C14—H14109.5
C6—C7—C13108.46 (10)C16—C14—H14109.5
C6—C7—C12112.83 (11)C15—C14—H14109.5
C13—C7—C12109.90 (11)C11—C15—C14109.49 (11)
C6—C7—C8107.50 (11)C11—C15—H15A109.8
C13—C7—C8109.47 (11)C14—C15—H15A109.8
C12—C7—C8108.61 (10)C11—C15—H15B109.8
C9—C8—C7108.95 (11)C14—C15—H15B109.8
C9—C8—H8A109.9H15A—C15—H15B108.2
C7—C8—H8A109.9C9—C16—C14109.75 (11)
C9—C8—H8B109.9C9—C16—H16A109.7
C7—C8—H8B109.9C14—C16—H16A109.7
H8A—C8—H8B108.3C9—C16—H16B109.7
C16—C9—C8109.49 (10)C14—C16—H16B109.7
C16—C9—C10109.40 (12)H16A—C16—H16B108.2
C8—C9—C10109.83 (11)C5—N1—O4117.73 (13)
C16—C9—H9109.4C5—N1—H1121.1
C8—C9—H9109.4O4—N1—H1121.1
C10—C9—H9109.4C2—O1—C1116.27 (11)
C11—C10—C9109.72 (10)C6—O4—N1113.40 (10)
O2—C2—C3—C417.1 (2)C13—C7—C12—C1158.97 (15)
O1—C2—C3—C4−164.72 (13)C8—C7—C12—C11−60.76 (14)
C2—C3—C4—C5−173.84 (14)C6—C7—C13—C14177.11 (12)
C3—C4—C5—O370.9 (2)C12—C7—C13—C14−59.12 (15)
C3—C4—C5—N1−110.41 (16)C8—C7—C13—C1460.09 (14)
O5—C6—C7—C13−26.1 (2)C7—C13—C14—C16−60.43 (14)
O4—C6—C7—C13154.74 (12)C7—C13—C14—C1559.74 (16)
O5—C6—C7—C12−148.06 (16)C10—C11—C15—C14−59.45 (15)
O4—C6—C7—C1232.74 (16)C12—C11—C15—C1460.73 (16)
O5—C6—C7—C892.22 (18)C13—C14—C15—C11−60.58 (16)
O4—C6—C7—C8−86.97 (13)C16—C14—C15—C1158.86 (15)
C6—C7—C8—C9−177.12 (10)C8—C9—C16—C14−61.11 (14)
C13—C7—C8—C9−59.50 (12)C10—C9—C16—C1459.30 (14)
C12—C7—C8—C960.50 (13)C13—C14—C16—C960.84 (13)
C7—C8—C9—C1659.84 (14)C15—C14—C16—C9−59.02 (14)
C7—C8—C9—C10−60.31 (13)O3—C5—N1—O41.1 (2)
C16—C9—C10—C11−59.98 (14)C4—C5—N1—O4−177.63 (12)
C8—C9—C10—C1160.21 (14)O2—C2—O1—C11.0 (2)
C9—C10—C11—C1560.21 (14)C3—C2—O1—C1−177.17 (13)
C9—C10—C11—C12−60.05 (13)O5—C6—O4—N1−7.7 (2)
C10—C11—C12—C760.71 (13)C7—C6—O4—N1171.54 (11)
C15—C11—C12—C7−59.69 (15)C5—N1—O4—C6−81.34 (16)
C6—C7—C12—C11−179.84 (11)
D—H···AD—HH···AD···AD—H···A
N1—H1···O3i0.881.872.7250 (19)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O3i0.881.872.7250 (19)165

Symmetry code: (i) .

  6 in total

1.  N,O-diacylhydroxylamines-structures in crystals and solutions.

Authors:  Jan Schraml; Jan Sýkora; Pavel Fiedler; Jana Roithová; Jaromír Mindl; Vratislav Blechta; Ivana Císarová; Otto Exner
Journal:  Org Biomol Chem       Date:  2004-07-23       Impact factor: 3.876

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Five-to-six membered ring-rearrangements in the reaction of 5-perfluoroalkyl-1,2,4-oxadiazoles with hydrazine and methylhydrazine.

Authors:  Silvestre Buscemi; Andrea Pace; Antonio Palumbo Piccionello; Ivana Pibiri; Nicolò Vivona; Gianluca Giorgi; Andrea Mazzanti; Domenico Spinelli
Journal:  J Org Chem       Date:  2006-10-13       Impact factor: 4.354

4.  2,5-Dioxopyrrolidin-1-yl adamantane-1-carboxyl-ate.

Authors:  Joe Liu; Jack K Clegg; Rachel Codd
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-04

5.  Kinetics and mechanism of inhibition of a serine beta-lactamase by O-aryloxycarbonyl hydroxamates.

Authors:  Ryan B Pelto; R F Pratt
Journal:  Biochemistry       Date:  2008-10-23       Impact factor: 3.162

6.  Tetradentate bis(hydroxamate) and hydroxamate-diketonate ligands and their titanium(IV) complexes.

Authors:  Natcharee Kongprakaiwoot; Bruce C Noll; Seth N Brown
Journal:  Inorg Chem       Date:  2008-12-15       Impact factor: 5.165

  6 in total
  1 in total

1.  2,5-Dioxopyrrolidin-1-yl adamantane-1-carboxyl-ate.

Authors:  Joe Liu; Jack K Clegg; Rachel Codd
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-04
  1 in total

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