Literature DB >> 21583447

(3aR,8aS,9S,9aR)-9-Hydroxy-perhydro-furo[3,2-f]indolizin-6-one.

Lubomír Svorc, Viktor Vrábel, Jozefína Zúžiová, Stefan Marchalín, Jozef Kožíšek.   

Abstract

In the title compound, C(10)H(15)NO(3), the central six-membered ring of the indolizine system adopts a chair conformation, while the oxopyrrolidine and hydro-furan rings attached to the indolizine ring system have envelope conformations. In the crystal, the mol-ecules form chains parallel to the b axis via inter-molecular O-H⋯O hydrogen bonds. The absolute configuration was assigned from the synthesis.

Entities:  

Year:  2009        PMID: 21583447      PMCID: PMC2977186          DOI: 10.1107/S1600536809024283

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general properties of indolizines see: Gundersen et al. (2007 ▶); Sundaram et al. (2007 ▶); Mikael (1999 ▶); Pyne (2005 ▶); Karanjule et al. (2006 ▶); Chaudhari et al. (2006 ▶); Martin et al. (2005 ▶). For the synthesis of the title compound see: Šafář et al. (2008 ▶). For related structures, see: Vrábel et al. (2004 ▶); Švorc et al. (2009 ▶). Camus et al. (2003 ▶) For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C10H15NO3 M = 197.23 Monoclinic, a = 6.2856 (1) Å b = 6.4521 (1) Å c = 11.7698 (2) Å β = 98.631 (2)° V = 471.92 (1) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 298 K 0.45 × 0.29 × 0.04 mm

Data collection

Oxford Diffraction Gemini R CCD diffractometer Absorption correction: analytical (Clark & Reid, 1995 ▶) T min = 0.962, T max = 0.996 12197 measured reflections 1359 independent reflections 1151 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.088 S = 1.09 1359 reflections 131 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.12 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2006 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2001 ▶); software used to prepare material for publication: enCIFer (Allen et al., 2004 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809024283/bg2263sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809024283/bg2263Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H15NO3F(000) = 212
Mr = 197.23Dx = 1.388 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 7268 reflections
a = 6.2856 (1) Åθ = 3.2–29.4°
b = 6.4521 (1) ŵ = 0.10 mm1
c = 11.7698 (2) ÅT = 298 K
β = 98.631 (2)°Block, white
V = 471.92 (1) Å30.45 × 0.29 × 0.04 mm
Z = 2
Oxford Diffraction Gemini R CCD diffractometer1359 independent reflections
Radiation source: fine-focus sealed tube1151 reflections with I > 2σ(I)
graphiteRint = 0.024
Detector resolution: 10.4340 pixels mm-1θmax = 29.5°, θmin = 3.5°
Rotation method data acquisition using ω and φ scansh = −8→8
Absorption correction: analytical (Clark & Reid, 1995)k = −8→8
Tmin = 0.962, Tmax = 0.996l = −16→16
12197 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.088H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0589P)2 + 0.002P] where P = (Fo2 + 2Fc2)/3
1359 reflections(Δ/σ)max < 0.001
131 parametersΔρmax = 0.18 e Å3
1 restraintΔρmin = −0.12 e Å3
Experimental. (face-indexed; Oxford Diffraction, 2006)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C20.4873 (3)0.2817 (3)0.72325 (14)0.0411 (4)
C30.4877 (3)0.1873 (3)0.84157 (15)0.0459 (4)
H3B0.34670.13320.84940.055*
H3A0.59210.07590.85500.055*
C40.5484 (3)0.3645 (3)0.92481 (13)0.0387 (4)
H4B0.64700.31770.99120.046*
H4A0.42160.42250.95060.046*
C50.6564 (2)0.5248 (3)0.85636 (11)0.0332 (3)
H5A0.61050.66470.87420.040*
C60.9007 (2)0.5135 (3)0.87248 (12)0.0344 (3)
H6A0.94260.36840.86500.041*
C70.9925 (2)0.6393 (3)0.78316 (14)0.0380 (4)
H7A1.14730.61170.79000.046*
C80.9599 (3)0.9602 (3)0.69052 (17)0.0550 (5)
H8B1.08491.04940.69340.066*
H8A0.83151.04440.67230.066*
C90.9646 (3)0.7923 (4)0.60051 (16)0.0532 (5)
H9B1.10880.77320.58230.064*
H9A0.86800.82510.53060.064*
C100.8887 (3)0.5997 (3)0.65890 (13)0.0431 (4)
H10A0.94440.47260.62860.052*
C110.6434 (3)0.5962 (3)0.64646 (13)0.0468 (4)
H11B0.58980.73670.65000.056*
H11A0.58470.53830.57230.056*
N10.5732 (2)0.4730 (2)0.73730 (11)0.0396 (3)
O10.4241 (2)0.1993 (3)0.63124 (11)0.0624 (4)
O20.9924 (2)0.5850 (2)0.98351 (11)0.0487 (3)
H2A0.993 (4)0.493 (5)1.031 (2)0.060 (7)*
O30.9608 (2)0.85665 (19)0.79966 (10)0.0471 (3)
U11U22U33U12U13U23
C20.0366 (7)0.0539 (10)0.0319 (7)−0.0097 (7)0.0025 (6)0.0024 (7)
C30.0520 (9)0.0514 (10)0.0339 (8)−0.0129 (8)0.0044 (7)0.0047 (7)
C40.0391 (7)0.0485 (10)0.0291 (7)−0.0010 (7)0.0071 (6)0.0031 (7)
C50.0373 (7)0.0380 (8)0.0242 (6)0.0012 (6)0.0045 (5)−0.0003 (6)
C60.0375 (7)0.0378 (8)0.0263 (7)0.0009 (6)−0.0004 (5)−0.0011 (7)
C70.0325 (7)0.0471 (10)0.0345 (8)0.0000 (7)0.0057 (6)0.0001 (7)
C80.0631 (11)0.0518 (11)0.0482 (10)−0.0164 (9)0.0025 (8)0.0130 (9)
C90.0532 (9)0.0700 (13)0.0378 (9)−0.0141 (10)0.0116 (7)0.0122 (9)
C100.0545 (9)0.0477 (10)0.0290 (7)−0.0050 (8)0.0129 (6)−0.0009 (7)
C110.0544 (9)0.0563 (10)0.0271 (7)−0.0143 (9)−0.0026 (6)0.0087 (8)
N10.0407 (7)0.0506 (8)0.0255 (6)−0.0095 (6)−0.0019 (5)0.0053 (6)
O10.0721 (8)0.0765 (10)0.0357 (6)−0.0308 (8)−0.0011 (6)−0.0067 (7)
O20.0583 (7)0.0559 (8)0.0275 (6)−0.0166 (6)−0.0082 (5)0.0040 (6)
O30.0619 (7)0.0427 (7)0.0362 (6)−0.0111 (6)0.0053 (5)0.0005 (6)
C2—O11.218 (2)C7—C101.531 (2)
C2—N11.347 (2)C7—H7A0.9800
C2—C31.520 (2)C8—O31.447 (2)
C3—C41.517 (3)C8—C91.519 (3)
C3—H3B0.9700C8—H8B0.9700
C3—H3A0.9700C8—H8A0.9700
C4—C51.530 (2)C9—C101.531 (3)
C4—H4B0.9700C9—H9B0.9700
C4—H4A0.9700C9—H9A0.9700
C5—N11.4591 (18)C10—C111.527 (2)
C5—C61.5204 (19)C10—H10A0.9800
C5—H5A0.9800C11—N11.453 (2)
C6—O21.4238 (17)C11—H11B0.9700
C6—C71.510 (2)C11—H11A0.9700
C6—H6A0.9800O2—H2A0.82 (3)
C7—O31.433 (2)
O1—C2—N1125.45 (17)C6—C7—H7A108.9
O1—C2—C3126.54 (18)C10—C7—H7A108.9
N1—C2—C3108.00 (15)O3—C8—C9106.96 (17)
C4—C3—C2104.81 (15)O3—C8—H8B110.3
C4—C3—H3B110.8C9—C8—H8B110.3
C2—C3—H3B110.8O3—C8—H8A110.3
C4—C3—H3A110.8C9—C8—H8A110.3
C2—C3—H3A110.8H8B—C8—H8A108.6
H3B—C3—H3A108.9C8—C9—C10103.06 (14)
C3—C4—C5104.93 (12)C8—C9—H9B111.2
C3—C4—H4B110.8C10—C9—H9B111.2
C5—C4—H4B110.8C8—C9—H9A111.2
C3—C4—H4A110.8C10—C9—H9A111.2
C5—C4—H4A110.8H9B—C9—H9A109.1
H4B—C4—H4A108.8C11—C10—C9110.32 (16)
N1—C5—C6108.57 (12)C11—C10—C7111.95 (13)
N1—C5—C4103.15 (13)C9—C10—C7100.16 (14)
C6—C5—C4114.91 (13)C11—C10—H10A111.3
N1—C5—H5A110.0C9—C10—H10A111.3
C6—C5—H5A110.0C7—C10—H10A111.3
C4—C5—H5A110.0N1—C11—C10110.56 (13)
O2—C6—C7108.67 (13)N1—C11—H11B109.5
O2—C6—C5111.18 (13)C10—C11—H11B109.5
C7—C6—C5111.84 (12)N1—C11—H11A109.5
O2—C6—H6A108.4C10—C11—H11A109.5
C7—C6—H6A108.4H11B—C11—H11A108.1
C5—C6—H6A108.4C2—N1—C11124.84 (15)
O3—C7—C6110.87 (13)C2—N1—C5114.01 (14)
O3—C7—C10104.17 (14)C11—N1—C5118.47 (13)
C6—C7—C10114.99 (13)C6—O2—H2A110.8 (18)
O3—C7—H7A108.9C7—O3—C8108.27 (13)
O1—C2—C3—C4−171.33 (18)O3—C7—C10—C941.27 (16)
N1—C2—C3—C49.79 (19)C6—C7—C10—C9162.80 (14)
C2—C3—C4—C5−19.80 (18)C9—C10—C11—N1−156.02 (15)
C3—C4—C5—N122.25 (17)C7—C10—C11—N1−45.4 (2)
C3—C4—C5—C6−95.73 (16)O1—C2—N1—C11−12.7 (3)
N1—C5—C6—O2173.44 (14)C3—C2—N1—C11166.20 (16)
C4—C5—C6—O2−71.68 (18)O1—C2—N1—C5−173.78 (17)
N1—C5—C6—C751.76 (17)C3—C2—N1—C55.11 (19)
C4—C5—C6—C7166.64 (13)C10—C11—N1—C2−105.48 (18)
O2—C6—C7—O3−54.82 (17)C10—C11—N1—C554.8 (2)
C5—C6—C7—O368.30 (16)C6—C5—N1—C2104.77 (16)
O2—C6—C7—C10−172.63 (14)C4—C5—N1—C2−17.57 (17)
C5—C6—C7—C10−49.52 (19)C6—C5—N1—C11−57.6 (2)
O3—C8—C9—C1019.3 (2)C4—C5—N1—C11−179.96 (15)
C8—C9—C10—C1182.07 (18)C6—C7—O3—C8−154.92 (13)
C8—C9—C10—C7−36.05 (18)C10—C7—O3—C8−30.69 (17)
O3—C7—C10—C11−75.64 (18)C9—C8—O3—C77.04 (19)
C6—C7—C10—C1145.9 (2)
D—H···AD—HH···AD···AD—H···A
O2—H2A···O3i0.82 (3)2.15 (3)2.9233 (19)157 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2A⋯O3i0.82 (3)2.15 (3)2.9233 (19)157 (2)

Symmetry code: (i) .

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