| Literature DB >> 21583447 |
Lubomír Svorc, Viktor Vrábel, Jozefína Zúžiová, Stefan Marchalín, Jozef Kožíšek.
Abstract
In the title compound, C(10)H(15)NO(3), the central six-membered ring of the indolizine system adopts a chair conformation, while the oxopyrrolidine and hydro-furan rings attached to the indolizine ring system have envelope conformations. In the crystal, the mol-ecules form chains parallel to the b axis via inter-molecular O-H⋯O hydrogen bonds. The absolute configuration was assigned from the synthesis.Entities:
Year: 2009 PMID: 21583447 PMCID: PMC2977186 DOI: 10.1107/S1600536809024283
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H15NO3 | |
| Monoclinic, | Mo |
| Hall symbol: P 2yb | Cell parameters from 7268 reflections |
| θ = 3.2–29.4° | |
| µ = 0.10 mm−1 | |
| β = 98.631 (2)° | Block, white |
| 0.45 × 0.29 × 0.04 mm | |
| Oxford Diffraction Gemini R CCD diffractometer | 1359 independent reflections |
| Radiation source: fine-focus sealed tube | 1151 reflections with |
| graphite | |
| Detector resolution: 10.4340 pixels mm-1 | θmax = 29.5°, θmin = 3.5° |
| Rotation method data acquisition using ω and φ scans | |
| Absorption correction: analytical (Clark & Reid, 1995) | |
| 12197 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1359 reflections | (Δ/σ)max < 0.001 |
| 131 parameters | Δρmax = 0.18 e Å−3 |
| 1 restraint | Δρmin = −0.12 e Å−3 |
| Experimental. (face-indexed; Oxford Diffraction, 2006) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C2 | 0.4873 (3) | 0.2817 (3) | 0.72325 (14) | 0.0411 (4) | |
| C3 | 0.4877 (3) | 0.1873 (3) | 0.84157 (15) | 0.0459 (4) | |
| H3B | 0.3467 | 0.1332 | 0.8494 | 0.055* | |
| H3A | 0.5921 | 0.0759 | 0.8550 | 0.055* | |
| C4 | 0.5484 (3) | 0.3645 (3) | 0.92481 (13) | 0.0387 (4) | |
| H4B | 0.6470 | 0.3177 | 0.9912 | 0.046* | |
| H4A | 0.4216 | 0.4225 | 0.9506 | 0.046* | |
| C5 | 0.6564 (2) | 0.5248 (3) | 0.85636 (11) | 0.0332 (3) | |
| H5A | 0.6105 | 0.6647 | 0.8742 | 0.040* | |
| C6 | 0.9007 (2) | 0.5135 (3) | 0.87248 (12) | 0.0344 (3) | |
| H6A | 0.9426 | 0.3684 | 0.8650 | 0.041* | |
| C7 | 0.9925 (2) | 0.6393 (3) | 0.78316 (14) | 0.0380 (4) | |
| H7A | 1.1473 | 0.6117 | 0.7900 | 0.046* | |
| C8 | 0.9599 (3) | 0.9602 (3) | 0.69052 (17) | 0.0550 (5) | |
| H8B | 1.0849 | 1.0494 | 0.6934 | 0.066* | |
| H8A | 0.8315 | 1.0444 | 0.6723 | 0.066* | |
| C9 | 0.9646 (3) | 0.7923 (4) | 0.60051 (16) | 0.0532 (5) | |
| H9B | 1.1088 | 0.7732 | 0.5823 | 0.064* | |
| H9A | 0.8680 | 0.8251 | 0.5306 | 0.064* | |
| C10 | 0.8887 (3) | 0.5997 (3) | 0.65890 (13) | 0.0431 (4) | |
| H10A | 0.9444 | 0.4726 | 0.6286 | 0.052* | |
| C11 | 0.6434 (3) | 0.5962 (3) | 0.64646 (13) | 0.0468 (4) | |
| H11B | 0.5898 | 0.7367 | 0.6500 | 0.056* | |
| H11A | 0.5847 | 0.5383 | 0.5723 | 0.056* | |
| N1 | 0.5732 (2) | 0.4730 (2) | 0.73730 (11) | 0.0396 (3) | |
| O1 | 0.4241 (2) | 0.1993 (3) | 0.63124 (11) | 0.0624 (4) | |
| O2 | 0.9924 (2) | 0.5850 (2) | 0.98351 (11) | 0.0487 (3) | |
| H2A | 0.993 (4) | 0.493 (5) | 1.031 (2) | 0.060 (7)* | |
| O3 | 0.9608 (2) | 0.85665 (19) | 0.79966 (10) | 0.0471 (3) |
| C2 | 0.0366 (7) | 0.0539 (10) | 0.0319 (7) | −0.0097 (7) | 0.0025 (6) | 0.0024 (7) |
| C3 | 0.0520 (9) | 0.0514 (10) | 0.0339 (8) | −0.0129 (8) | 0.0044 (7) | 0.0047 (7) |
| C4 | 0.0391 (7) | 0.0485 (10) | 0.0291 (7) | −0.0010 (7) | 0.0071 (6) | 0.0031 (7) |
| C5 | 0.0373 (7) | 0.0380 (8) | 0.0242 (6) | 0.0012 (6) | 0.0045 (5) | −0.0003 (6) |
| C6 | 0.0375 (7) | 0.0378 (8) | 0.0263 (7) | 0.0009 (6) | −0.0004 (5) | −0.0011 (7) |
| C7 | 0.0325 (7) | 0.0471 (10) | 0.0345 (8) | 0.0000 (7) | 0.0057 (6) | 0.0001 (7) |
| C8 | 0.0631 (11) | 0.0518 (11) | 0.0482 (10) | −0.0164 (9) | 0.0025 (8) | 0.0130 (9) |
| C9 | 0.0532 (9) | 0.0700 (13) | 0.0378 (9) | −0.0141 (10) | 0.0116 (7) | 0.0122 (9) |
| C10 | 0.0545 (9) | 0.0477 (10) | 0.0290 (7) | −0.0050 (8) | 0.0129 (6) | −0.0009 (7) |
| C11 | 0.0544 (9) | 0.0563 (10) | 0.0271 (7) | −0.0143 (9) | −0.0026 (6) | 0.0087 (8) |
| N1 | 0.0407 (7) | 0.0506 (8) | 0.0255 (6) | −0.0095 (6) | −0.0019 (5) | 0.0053 (6) |
| O1 | 0.0721 (8) | 0.0765 (10) | 0.0357 (6) | −0.0308 (8) | −0.0011 (6) | −0.0067 (7) |
| O2 | 0.0583 (7) | 0.0559 (8) | 0.0275 (6) | −0.0166 (6) | −0.0082 (5) | 0.0040 (6) |
| O3 | 0.0619 (7) | 0.0427 (7) | 0.0362 (6) | −0.0111 (6) | 0.0053 (5) | 0.0005 (6) |
| C2—O1 | 1.218 (2) | C7—C10 | 1.531 (2) |
| C2—N1 | 1.347 (2) | C7—H7A | 0.9800 |
| C2—C3 | 1.520 (2) | C8—O3 | 1.447 (2) |
| C3—C4 | 1.517 (3) | C8—C9 | 1.519 (3) |
| C3—H3B | 0.9700 | C8—H8B | 0.9700 |
| C3—H3A | 0.9700 | C8—H8A | 0.9700 |
| C4—C5 | 1.530 (2) | C9—C10 | 1.531 (3) |
| C4—H4B | 0.9700 | C9—H9B | 0.9700 |
| C4—H4A | 0.9700 | C9—H9A | 0.9700 |
| C5—N1 | 1.4591 (18) | C10—C11 | 1.527 (2) |
| C5—C6 | 1.5204 (19) | C10—H10A | 0.9800 |
| C5—H5A | 0.9800 | C11—N1 | 1.453 (2) |
| C6—O2 | 1.4238 (17) | C11—H11B | 0.9700 |
| C6—C7 | 1.510 (2) | C11—H11A | 0.9700 |
| C6—H6A | 0.9800 | O2—H2A | 0.82 (3) |
| C7—O3 | 1.433 (2) | ||
| O1—C2—N1 | 125.45 (17) | C6—C7—H7A | 108.9 |
| O1—C2—C3 | 126.54 (18) | C10—C7—H7A | 108.9 |
| N1—C2—C3 | 108.00 (15) | O3—C8—C9 | 106.96 (17) |
| C4—C3—C2 | 104.81 (15) | O3—C8—H8B | 110.3 |
| C4—C3—H3B | 110.8 | C9—C8—H8B | 110.3 |
| C2—C3—H3B | 110.8 | O3—C8—H8A | 110.3 |
| C4—C3—H3A | 110.8 | C9—C8—H8A | 110.3 |
| C2—C3—H3A | 110.8 | H8B—C8—H8A | 108.6 |
| H3B—C3—H3A | 108.9 | C8—C9—C10 | 103.06 (14) |
| C3—C4—C5 | 104.93 (12) | C8—C9—H9B | 111.2 |
| C3—C4—H4B | 110.8 | C10—C9—H9B | 111.2 |
| C5—C4—H4B | 110.8 | C8—C9—H9A | 111.2 |
| C3—C4—H4A | 110.8 | C10—C9—H9A | 111.2 |
| C5—C4—H4A | 110.8 | H9B—C9—H9A | 109.1 |
| H4B—C4—H4A | 108.8 | C11—C10—C9 | 110.32 (16) |
| N1—C5—C6 | 108.57 (12) | C11—C10—C7 | 111.95 (13) |
| N1—C5—C4 | 103.15 (13) | C9—C10—C7 | 100.16 (14) |
| C6—C5—C4 | 114.91 (13) | C11—C10—H10A | 111.3 |
| N1—C5—H5A | 110.0 | C9—C10—H10A | 111.3 |
| C6—C5—H5A | 110.0 | C7—C10—H10A | 111.3 |
| C4—C5—H5A | 110.0 | N1—C11—C10 | 110.56 (13) |
| O2—C6—C7 | 108.67 (13) | N1—C11—H11B | 109.5 |
| O2—C6—C5 | 111.18 (13) | C10—C11—H11B | 109.5 |
| C7—C6—C5 | 111.84 (12) | N1—C11—H11A | 109.5 |
| O2—C6—H6A | 108.4 | C10—C11—H11A | 109.5 |
| C7—C6—H6A | 108.4 | H11B—C11—H11A | 108.1 |
| C5—C6—H6A | 108.4 | C2—N1—C11 | 124.84 (15) |
| O3—C7—C6 | 110.87 (13) | C2—N1—C5 | 114.01 (14) |
| O3—C7—C10 | 104.17 (14) | C11—N1—C5 | 118.47 (13) |
| C6—C7—C10 | 114.99 (13) | C6—O2—H2A | 110.8 (18) |
| O3—C7—H7A | 108.9 | C7—O3—C8 | 108.27 (13) |
| O1—C2—C3—C4 | −171.33 (18) | O3—C7—C10—C9 | 41.27 (16) |
| N1—C2—C3—C4 | 9.79 (19) | C6—C7—C10—C9 | 162.80 (14) |
| C2—C3—C4—C5 | −19.80 (18) | C9—C10—C11—N1 | −156.02 (15) |
| C3—C4—C5—N1 | 22.25 (17) | C7—C10—C11—N1 | −45.4 (2) |
| C3—C4—C5—C6 | −95.73 (16) | O1—C2—N1—C11 | −12.7 (3) |
| N1—C5—C6—O2 | 173.44 (14) | C3—C2—N1—C11 | 166.20 (16) |
| C4—C5—C6—O2 | −71.68 (18) | O1—C2—N1—C5 | −173.78 (17) |
| N1—C5—C6—C7 | 51.76 (17) | C3—C2—N1—C5 | 5.11 (19) |
| C4—C5—C6—C7 | 166.64 (13) | C10—C11—N1—C2 | −105.48 (18) |
| O2—C6—C7—O3 | −54.82 (17) | C10—C11—N1—C5 | 54.8 (2) |
| C5—C6—C7—O3 | 68.30 (16) | C6—C5—N1—C2 | 104.77 (16) |
| O2—C6—C7—C10 | −172.63 (14) | C4—C5—N1—C2 | −17.57 (17) |
| C5—C6—C7—C10 | −49.52 (19) | C6—C5—N1—C11 | −57.6 (2) |
| O3—C8—C9—C10 | 19.3 (2) | C4—C5—N1—C11 | −179.96 (15) |
| C8—C9—C10—C11 | 82.07 (18) | C6—C7—O3—C8 | −154.92 (13) |
| C8—C9—C10—C7 | −36.05 (18) | C10—C7—O3—C8 | −30.69 (17) |
| O3—C7—C10—C11 | −75.64 (18) | C9—C8—O3—C7 | 7.04 (19) |
| C6—C7—C10—C11 | 45.9 (2) |
| H··· | ||||
| O2—H2A···O3i | 0.82 (3) | 2.15 (3) | 2.9233 (19) | 157 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2—H2 | 0.82 (3) | 2.15 (3) | 2.9233 (19) | 157 (2) |
Symmetry code: (i) .