Literature DB >> 21583415

A new polymorph of catena-poly[[tri-aqua-cadmium(II)]-μ(2)-pyrazine-2,3-dicarboxyl-ato].

Hua Yin1.   

Abstract

The title complex, [Cd(C(6)n class="Species">H(2)N(2)O(4))(H(2)O)(3)](n), is a new monoclinic polymorph. The ortho-rhom-bic form has previously been reported [Ma et al. (2006 ▶). Acta Cryst. E62, m2528-m2529]. The Cd-N and Cd-O bond lengths range from 2.265 (3) to 2.333 (3) Å; a weak Cd-O inter-action is also present, the inter-atomic distance being 2.658 (4) Å. The Cd(II) ions, which have a distorted penta-gonal-bipyramidal geometry, are bridged by pyrazine-2,3-dicarboxyl-ato ligands, forming a zigzag chain structure. The chains are connected by O-H⋯O hydrogen bonds into a three-dimensional framework.

Entities:  

Year:  2009        PMID: 21583415      PMCID: PMC2977175          DOI: 10.1107/S1600536809028268

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the ortho­rhom­bic polymorph, see: Ma et al. (2006 ▶). For general background and related structures, see: Mao et al. (1996 ▶); Kitaura et al. (2002 ▶); Maji et al. (2004 ▶); Yin & Liu (2007 ▶, 2009 ▶).

Experimental

Crystal data

[Cd(C6H2N2O4)(H2O)3] M = 332.54 Monoclinic, a = 5.586 (6) Å b = 15.748 (9) Å c = 10.832 (6) Å β = 93.94 (3)° V = 950.5 (12) Å3 Z = 4 Mo Kα radiation μ = 2.32 mm−1 T = 293 K 0.25 × 0.23 × 0.18 mm

Data collection

Rigaku Weissenberg IP diffractometer Absorption correction: multi-scan (TEXRAY; Molecular Structure Corporation, 1999 ▶) T min = 0.668, T max = 1.000 (expected range = 0.440–0.658) 5659 measured reflections 2129 independent reflections 1699 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.074 S = 1.03 2129 reflections 145 parameters 9 restraints H-atom parameters constrained Δρmax = 0.82 e Å−3 Δρmin = −0.53 e Å−3 Data collection: TEXRAY (Molecular Structure Corporation, 1999 ▶); cell refinement: TEXRAY; data reduction: TEXSAN (Molecular Structure Corporation, 1999 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEX (McArdle, 1995 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809028268/bt5003sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809028268/bt5003Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cd(C6H2N2O4)(H2O)3]F(000) = 648
Mr = 332.54Dx = 2.324 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4538 reflections
a = 5.586 (6) Åθ = 3.2–27.5°
b = 15.748 (9) ŵ = 2.32 mm1
c = 10.832 (6) ÅT = 293 K
β = 93.94 (3)°Block, colourless
V = 950.5 (12) Å30.25 × 0.23 × 0.18 mm
Z = 4
Weissenberg IP diffractometer2129 independent reflections
Radiation source: rotor target1699 reflections with I > 2σ(I)
graphiteRint = 0.032
ω scansθmax = 27.5°, θmin = 3.2°
Absorption correction: multi-scan (TEXRAY; Molecular Structure Corporation, 1999)h = −7→5
Tmin = 0.668, Tmax = 1.000k = −19→20
5659 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.074H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0366P)2 + 0.562P] where P = (Fo2 + 2Fc2)/3
2129 reflections(Δ/σ)max < 0.001
145 parametersΔρmax = 0.82 e Å3
9 restraintsΔρmin = −0.53 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cd10.07189 (6)0.372955 (14)0.31158 (2)0.02540 (10)
O10.3289 (6)0.28668 (14)0.2181 (2)0.0294 (6)
O20.4160 (6)0.15343 (17)0.1696 (2)0.0319 (7)
O30.3399 (7)−0.01740 (17)0.3172 (3)0.0434 (8)
O40.1098 (7)−0.00334 (19)0.1449 (3)0.0475 (9)
O1W0.2872 (7)0.34613 (18)0.5126 (2)0.0374 (7)
H1WA0.39890.37850.53180.056*
H1WB0.18870.34010.56630.056*
O2W−0.2530 (6)0.37407 (15)0.1551 (3)0.0358 (7)
H2WA−0.36830.34100.16400.054*
H2WB−0.30710.42120.13230.054*
O3W−0.1846 (8)0.4335 (2)0.4320 (3)0.0583 (11)
H3WA−0.30950.45810.40130.088*
H3WB−0.19450.42770.50760.088*
N1−0.0445 (7)0.23327 (16)0.3472 (3)0.0218 (7)
N2−0.1324 (7)0.06150 (18)0.3781 (3)0.0253 (7)
C10.0905 (7)0.17535 (19)0.2954 (3)0.0194 (7)
C20.0436 (7)0.0893 (2)0.3109 (3)0.0195 (7)
C3−0.2626 (8)0.1201 (2)0.4287 (3)0.0269 (8)
H3A−0.38660.10310.47630.032*
C4−0.2215 (8)0.2060 (2)0.4137 (3)0.0242 (8)
H4A−0.31870.24530.45050.029*
C50.2939 (8)0.2074 (2)0.2211 (3)0.0216 (7)
C60.1817 (9)0.0189 (2)0.2531 (4)0.0279 (9)
U11U22U33U12U13U23
Cd10.02614 (19)0.01735 (14)0.03381 (15)0.00158 (10)0.00999 (10)0.00080 (10)
O10.029 (2)0.0203 (10)0.0414 (13)−0.0017 (11)0.0180 (12)−0.0012 (10)
O20.027 (2)0.0258 (12)0.0445 (15)−0.0003 (11)0.0184 (13)−0.0045 (11)
O30.043 (3)0.0278 (13)0.0605 (19)0.0147 (14)0.0148 (16)0.0078 (13)
O40.044 (3)0.0526 (17)0.0482 (16)−0.0186 (16)0.0185 (15)−0.0300 (14)
O1W0.034 (2)0.0431 (14)0.0351 (14)−0.0041 (13)0.0042 (12)0.0050 (12)
O2W0.031 (2)0.0274 (12)0.0480 (15)−0.0044 (12)−0.0024 (13)0.0038 (11)
O3W0.053 (3)0.089 (3)0.0332 (14)0.035 (2)0.0059 (15)−0.0104 (16)
N10.023 (2)0.0185 (12)0.0247 (13)−0.0002 (11)0.0056 (12)−0.0004 (11)
N20.026 (2)0.0217 (13)0.0280 (14)−0.0012 (12)0.0035 (13)0.0010 (11)
C10.022 (2)0.0166 (14)0.0198 (14)0.0019 (13)−0.0002 (13)−0.0009 (12)
C20.017 (2)0.0188 (14)0.0233 (14)0.0010 (13)0.0038 (13)0.0013 (12)
C30.024 (2)0.0299 (17)0.0273 (16)−0.0027 (15)0.0085 (14)−0.0003 (14)
C40.022 (2)0.0262 (16)0.0253 (15)0.0031 (14)0.0095 (14)−0.0030 (13)
C50.021 (2)0.0202 (14)0.0236 (14)0.0020 (14)0.0031 (14)−0.0020 (13)
C60.025 (3)0.0163 (14)0.044 (2)−0.0037 (15)0.0156 (17)−0.0055 (15)
Cd1—O3W2.218 (3)O2W—H2WB0.8324
Cd1—O12.265 (3)O3W—H3WA0.8463
Cd1—O3i2.294 (3)O3W—H3WB0.8295
Cd1—N12.334 (3)N1—C11.332 (4)
Cd1—O2W2.397 (4)N1—C41.334 (5)
Cd1—O1W2.451 (3)N2—C31.317 (5)
O1—C51.265 (4)N2—C21.337 (5)
O2—C51.245 (4)C1—C21.393 (5)
O3—C61.226 (6)C1—C51.522 (5)
O3—Cd1ii2.294 (3)C2—C61.510 (5)
O4—C61.262 (5)C3—C41.384 (5)
O1W—H1WA0.8214C3—H3A0.9300
O1W—H1WB0.8327C4—H4A0.9300
O2W—H2WA0.8385
O3W—Cd1—O1167.27 (11)Cd1—O3W—H3WB128.5
O3W—Cd1—O3i102.02 (13)H3WA—O3W—H3WB109.3
O1—Cd1—O3i90.61 (11)C1—N1—C4118.0 (3)
O3W—Cd1—N196.29 (14)C1—N1—Cd1113.8 (2)
O1—Cd1—N172.59 (11)C4—N1—Cd1128.2 (2)
O3i—Cd1—N1152.11 (10)C3—N2—C2116.5 (3)
O3W—Cd1—O2W85.67 (14)N1—C1—C2119.9 (3)
O1—Cd1—O2W99.25 (12)N1—C1—C5117.4 (3)
O3i—Cd1—O2W75.44 (12)C2—C1—C5122.6 (3)
N1—Cd1—O2W85.28 (11)N2—C2—C1122.4 (3)
O3W—Cd1—O1W81.30 (13)N2—C2—C6113.7 (3)
O1—Cd1—O1W90.37 (12)C1—C2—C6124.0 (3)
O3i—Cd1—O1W123.85 (12)N2—C3—C4122.4 (4)
N1—Cd1—O1W79.40 (11)N2—C3—H3A118.8
O2W—Cd1—O1W158.60 (11)C4—C3—H3A118.8
C5—O1—Cd1118.5 (2)N1—C4—C3120.9 (3)
C6—O3—Cd1ii100.6 (2)N1—C4—H4A119.6
Cd1—O1W—H1WA115.8C3—C4—H4A119.6
Cd1—O1W—H1WB109.4O2—C5—O1124.9 (3)
H1WA—O1W—H1WB114.9O2—C5—C1117.5 (3)
Cd1—O2W—H2WA117.7O1—C5—C1117.6 (3)
Cd1—O2W—H2WB117.3O3—C6—O4124.5 (4)
H2WA—O2W—H2WB108.8O3—C6—C2118.4 (3)
Cd1—O3W—H3WA120.9O4—C6—C2116.7 (4)
O3W—Cd1—O1—C532.7 (8)N1—C1—C2—N2−0.9 (6)
O3i—Cd1—O1—C5−154.6 (3)C5—C1—C2—N2178.7 (3)
N1—Cd1—O1—C52.8 (3)N1—C1—C2—C6178.3 (3)
O2W—Cd1—O1—C5−79.2 (3)C5—C1—C2—C6−2.1 (6)
O1W—Cd1—O1—C581.6 (3)C2—N2—C3—C40.1 (6)
O3W—Cd1—N1—C1−174.6 (3)C1—N1—C4—C30.3 (6)
O1—Cd1—N1—C1−0.9 (2)Cd1—N1—C4—C3−178.0 (3)
O3i—Cd1—N1—C154.4 (4)N2—C3—C4—N1−0.5 (6)
O2W—Cd1—N1—C1100.3 (3)Cd1—O1—C5—O2177.2 (3)
O1W—Cd1—N1—C1−94.7 (3)Cd1—O1—C5—C1−4.1 (4)
O3W—Cd1—N1—C43.8 (4)N1—C1—C5—O2−178.0 (3)
O1—Cd1—N1—C4177.4 (4)C2—C1—C5—O22.4 (5)
O3i—Cd1—N1—C4−127.3 (3)N1—C1—C5—O13.3 (5)
O2W—Cd1—N1—C4−81.3 (3)C2—C1—C5—O1−176.4 (4)
O1W—Cd1—N1—C483.7 (3)Cd1ii—O3—C6—O4−2.1 (5)
C4—N1—C1—C20.4 (5)Cd1ii—O3—C6—C2171.1 (3)
Cd1—N1—C1—C2178.9 (3)N2—C2—C6—O3−81.2 (5)
C4—N1—C1—C5−179.2 (3)C1—C2—C6—O399.6 (5)
Cd1—N1—C1—C5−0.7 (4)N2—C2—C6—O492.5 (4)
C3—N2—C2—C10.6 (6)C1—C2—C6—O4−86.7 (5)
C3—N2—C2—C6−178.6 (3)
D—H···AD—HH···AD···AD—H···A
O1W—H1WA···O4iii0.822.563.328 (5)156
O2W—H2WA···O1iv0.842.022.834 (5)164
O2W—H2WB···N2v0.832.243.036 (4)161
O3W—H3WA···O4v0.851.822.656 (6)169
O3W—H3WB···O4vi0.832.252.865 (4)132
O3W—H3WB···O2vi0.832.222.935 (4)144
Table 1

Selected geometric parameters (Å, °)

Cd1—O3W2.218 (3)
Cd1—O12.265 (3)
Cd1—O3i2.294 (3)
Cd1—N12.334 (3)
Cd1—O2W2.397 (4)
Cd1—O1W2.451 (3)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1WA⋯O4ii0.822.563.328 (5)156
O2W—H2WA⋯O1iii0.842.022.834 (5)164
O2W—H2WB⋯N2iv0.832.243.036 (4)161
O3W—H3WA⋯O4iv0.851.822.656 (6)169
O3W—H3WB⋯O4v0.832.252.865 (4)132
O3W—H3WB⋯O2v0.832.222.935 (4)144

Symmetry codes: (ii) ; (iii) ; (iv) ; (v) .

  3 in total

1.  Expanding and shrinking porous modulation based on pillared-layer coordination polymers showing selective guest adsorption.

Authors:  Tapas Kumar Maji; Kazuhiro Uemura; Ho-Chol Chang; Ryotaro Matsuda; Susumu Kitagawa
Journal:  Angew Chem Int Ed Engl       Date:  2004-06-21       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  A pillared-layer coordination polymer network displaying hysteretic sorption: [Cu(2)(pzdc)(2)(dpyg)](n) (pzdc= pyrazine-2,3-dicarboxylate; dpyg=1,2-Di(4-pyridyl)glycol).

Authors:  Ryo Kitaura; Kentaro Fujimoto; Shin-Ichiro Noro; Mitsuru Kondo; Susumu Kitagawa
Journal:  Angew Chem Int Ed Engl       Date:  2002-01-04       Impact factor: 15.336

  3 in total
  1 in total

1.  Poly[(aqua-calcium)-μ(4)-pyrazine-2,3-di-carboxyl-ato].

Authors:  Qing-Feng Yang; Yue-Ping Zhang; Jing Lu; Ping Xue; Zheng Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-30
  1 in total

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