| Literature DB >> 21583408 |
Abstract
The Ni(II) atom in the title compound, [Ni(C(12)H(8)N(5))(2)(H(2)O)(4)]·2H(2)O, lies on a center of inversion and is coordinated by the N atoms of two 3,5-di-4-pyridine-1,2,4-triazolate ligands and by four water O atoms in a slightly distorted octa-hedral geometry. The coordinated and uncoordinated water mol-ecules inter-act with the N-heterocycles through O-H⋯N and O-H⋯O hydrogen bonds, generating a three-dimensional supra-molecular architecture.Entities:
Year: 2009 PMID: 21583408 PMCID: PMC2977209 DOI: 10.1107/S1600536809027688
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Ni(C12H8N5)2(H2O)4]·2H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 467 reflections |
| θ = 1.5–25.3° | |
| µ = 0.81 mm−1 | |
| β = 107.20 (3)° | Block, green |
| 0.43 × 0.27 × 0.21 mm | |
| Bruker SMART CCD area-detector diffractometer | 2344 independent reflections |
| Radiation source: fine-focus sealed tube | 2131 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.2°, θmin = 3.2° |
| Absorption correction: multi-scan ( | |
| 10883 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2344 reflections | (Δ/σ)max < 0.001 |
| 211 parameters | Δρmax = 0.26 e Å−3 |
| 0 restraints | Δρmin = −0.34 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.4927 (3) | 0.33129 (14) | 0.6238 (2) | 0.0265 (5) | |
| H1C | 0.5402 | 0.3645 | 0.6914 | 0.032* | |
| C2 | 0.4672 (3) | 0.24522 (14) | 0.6376 (2) | 0.0272 (5) | |
| H2C | 0.4983 | 0.2216 | 0.7131 | 0.033* | |
| C3 | 0.3951 (3) | 0.19348 (13) | 0.53900 (19) | 0.0218 (5) | |
| C4 | 0.3570 (4) | 0.23293 (14) | 0.4292 (2) | 0.0287 (5) | |
| H4A | 0.3117 | 0.2010 | 0.3603 | 0.034* | |
| C5 | 0.3864 (4) | 0.31953 (14) | 0.4228 (2) | 0.0283 (5) | |
| H5A | 0.3590 | 0.3446 | 0.3483 | 0.034* | |
| C6 | 0.3545 (3) | 0.10302 (13) | 0.55253 (19) | 0.0217 (5) | |
| C7 | 0.2505 (3) | −0.02231 (13) | 0.52360 (19) | 0.0224 (5) | |
| C8 | 0.1688 (3) | −0.10334 (14) | 0.46845 (19) | 0.0232 (5) | |
| C9 | 0.1536 (4) | −0.17397 (16) | 0.5368 (2) | 0.0370 (6) | |
| H9A | 0.1892 | −0.1697 | 0.6189 | 0.044* | |
| C10 | 0.0858 (4) | −0.24977 (16) | 0.4823 (2) | 0.0411 (7) | |
| H10A | 0.0794 | −0.2962 | 0.5301 | 0.049* | |
| C11 | 0.0428 (4) | −0.19348 (16) | 0.3005 (2) | 0.0359 (6) | |
| H11A | 0.0042 | −0.1995 | 0.2186 | 0.043* | |
| C12 | 0.1111 (4) | −0.11487 (15) | 0.3471 (2) | 0.0312 (6) | |
| H12A | 0.1184 | −0.0699 | 0.2971 | 0.037* | |
| H1A | 0.413 (5) | 0.550 (2) | 0.686 (3) | 0.051 (9)* | |
| H2A | 0.149 (5) | 0.527 (2) | 0.358 (3) | 0.051 (10)* | |
| H3A | 0.163 (5) | 0.426 (2) | 0.782 (3) | 0.054 (10)* | |
| H1B | 0.283 (5) | 0.493 (2) | 0.633 (3) | 0.055 (10)* | |
| H2B | 0.257 (4) | 0.5122 (18) | 0.292 (3) | 0.048 (9)* | |
| H3B | 0.077 (5) | 0.372 (2) | 0.691 (3) | 0.062 (10)* | |
| N1 | 0.4525 (3) | 0.36961 (11) | 0.51811 (16) | 0.0237 (4) | |
| N2 | 0.3943 (3) | 0.06670 (12) | 0.65942 (16) | 0.0279 (5) | |
| N3 | 0.3259 (3) | −0.01470 (12) | 0.64046 (17) | 0.0290 (5) | |
| N4 | 0.2645 (3) | 0.04985 (11) | 0.46332 (16) | 0.0226 (4) | |
| N5 | 0.0286 (3) | −0.26126 (13) | 0.3656 (2) | 0.0360 (5) | |
| Ni1 | 0.5000 | 0.5000 | 0.5000 | 0.01983 (13) | |
| O1 | 0.3476 (3) | 0.53202 (12) | 0.61834 (15) | 0.0275 (4) | |
| O2 | 0.2507 (3) | 0.50476 (11) | 0.35989 (15) | 0.0287 (4) | |
| O3 | 0.1179 (3) | 0.42339 (11) | 0.70636 (17) | 0.0314 (4) |
| C1 | 0.0368 (14) | 0.0208 (12) | 0.0204 (12) | −0.0048 (10) | 0.0062 (10) | −0.0025 (9) |
| C2 | 0.0390 (14) | 0.0215 (12) | 0.0197 (12) | −0.0036 (10) | 0.0066 (10) | 0.0023 (9) |
| C3 | 0.0249 (12) | 0.0178 (11) | 0.0234 (12) | −0.0009 (9) | 0.0083 (9) | −0.0001 (9) |
| C4 | 0.0434 (15) | 0.0199 (12) | 0.0204 (12) | −0.0063 (11) | 0.0057 (10) | −0.0029 (9) |
| C5 | 0.0416 (15) | 0.0216 (12) | 0.0199 (12) | −0.0021 (10) | 0.0062 (10) | 0.0026 (9) |
| C6 | 0.0269 (12) | 0.0174 (11) | 0.0209 (11) | −0.0006 (9) | 0.0073 (9) | 0.0001 (9) |
| C7 | 0.0281 (12) | 0.0162 (11) | 0.0224 (11) | −0.0009 (9) | 0.0068 (9) | −0.0005 (8) |
| C8 | 0.0239 (12) | 0.0188 (11) | 0.0254 (12) | −0.0003 (9) | 0.0051 (9) | −0.0010 (9) |
| C9 | 0.0588 (18) | 0.0260 (13) | 0.0251 (13) | −0.0116 (12) | 0.0108 (12) | 0.0001 (10) |
| C10 | 0.0624 (19) | 0.0225 (13) | 0.0392 (16) | −0.0129 (13) | 0.0161 (13) | 0.0020 (11) |
| C11 | 0.0424 (15) | 0.0314 (14) | 0.0280 (13) | −0.0042 (11) | 0.0014 (11) | −0.0060 (11) |
| C12 | 0.0400 (15) | 0.0221 (12) | 0.0269 (13) | −0.0029 (10) | 0.0031 (11) | 0.0039 (10) |
| N1 | 0.0310 (11) | 0.0168 (9) | 0.0223 (10) | −0.0024 (8) | 0.0067 (8) | −0.0006 (7) |
| N2 | 0.0413 (12) | 0.0175 (10) | 0.0232 (10) | −0.0064 (9) | 0.0070 (9) | 0.0002 (8) |
| N3 | 0.0429 (12) | 0.0189 (10) | 0.0232 (10) | −0.0071 (9) | 0.0067 (9) | 0.0009 (8) |
| N4 | 0.0281 (10) | 0.0161 (9) | 0.0222 (10) | −0.0016 (8) | 0.0053 (8) | 0.0011 (7) |
| N5 | 0.0408 (13) | 0.0244 (11) | 0.0416 (13) | −0.0077 (10) | 0.0102 (10) | −0.0075 (9) |
| Ni1 | 0.0263 (2) | 0.0140 (2) | 0.0186 (2) | −0.00180 (17) | 0.00564 (16) | −0.00025 (16) |
| O1 | 0.0322 (10) | 0.0267 (9) | 0.0246 (9) | −0.0036 (8) | 0.0101 (8) | −0.0021 (7) |
| O2 | 0.0288 (10) | 0.0329 (10) | 0.0228 (9) | 0.0044 (8) | 0.0054 (7) | −0.0001 (7) |
| O3 | 0.0420 (11) | 0.0222 (9) | 0.0288 (10) | −0.0034 (8) | 0.0088 (8) | −0.0015 (7) |
| C1—N1 | 1.339 (3) | C10—N5 | 1.331 (3) |
| C1—C2 | 1.377 (3) | C10—H10A | 0.9300 |
| C1—H1C | 0.9300 | C11—N5 | 1.333 (3) |
| C2—C3 | 1.390 (3) | C11—C12 | 1.380 (3) |
| C2—H2C | 0.9300 | C11—H11A | 0.9300 |
| C3—C4 | 1.389 (3) | C12—H12A | 0.9300 |
| C3—C6 | 1.465 (3) | N1—Ni1 | 2.0921 (18) |
| C4—C5 | 1.378 (3) | N2—N3 | 1.364 (3) |
| C4—H4A | 0.9300 | Ni1—O2 | 2.0753 (19) |
| C5—N1 | 1.341 (3) | Ni1—O2i | 2.0753 (19) |
| C5—H5A | 0.9300 | Ni1—N1i | 2.0921 (18) |
| C6—N2 | 1.337 (3) | Ni1—O1 | 2.0945 (17) |
| C6—N4 | 1.353 (3) | Ni1—O1i | 2.0945 (17) |
| C7—N3 | 1.334 (3) | O1—H1A | 0.85 (3) |
| C7—N4 | 1.356 (3) | O1—H1B | 0.82 (3) |
| C7—C8 | 1.471 (3) | O2—H2A | 0.82 (3) |
| C8—C12 | 1.384 (3) | O2—H2B | 0.82 (3) |
| C8—C9 | 1.393 (3) | O3—H3A | 0.85 (3) |
| C9—C10 | 1.372 (3) | O3—H3B | 0.86 (4) |
| C9—H9A | 0.9300 | ||
| N1—C1—C2 | 123.3 (2) | C11—C12—C8 | 119.6 (2) |
| N1—C1—H1C | 118.3 | C11—C12—H12A | 120.2 |
| C2—C1—H1C | 118.3 | C8—C12—H12A | 120.2 |
| C1—C2—C3 | 120.1 (2) | C1—N1—C5 | 116.65 (19) |
| C1—C2—H2C | 119.9 | C1—N1—Ni1 | 122.37 (14) |
| C3—C2—H2C | 119.9 | C5—N1—Ni1 | 120.94 (15) |
| C4—C3—C2 | 116.5 (2) | C6—N2—N3 | 105.95 (17) |
| C4—C3—C6 | 122.7 (2) | C7—N3—N2 | 105.88 (17) |
| C2—C3—C6 | 120.7 (2) | C6—N4—C7 | 101.41 (18) |
| C5—C4—C3 | 119.8 (2) | C10—N5—C11 | 115.9 (2) |
| C5—C4—H4A | 120.1 | O2—Ni1—O2i | 180.0 |
| C3—C4—H4A | 120.1 | O2—Ni1—N1i | 90.99 (7) |
| N1—C5—C4 | 123.5 (2) | O2i—Ni1—N1i | 89.01 (7) |
| N1—C5—H5A | 118.2 | O2—Ni1—N1 | 89.01 (7) |
| C4—C5—H5A | 118.2 | O2i—Ni1—N1 | 90.99 (7) |
| N2—C6—N4 | 113.30 (19) | N1i—Ni1—N1 | 180.0 |
| N2—C6—C3 | 121.29 (19) | O2—Ni1—O1 | 90.36 (8) |
| N4—C6—C3 | 125.27 (19) | O2i—Ni1—O1 | 89.64 (8) |
| N3—C7—N4 | 113.45 (19) | N1i—Ni1—O1 | 88.45 (7) |
| N3—C7—C8 | 121.77 (19) | N1—Ni1—O1 | 91.55 (7) |
| N4—C7—C8 | 124.7 (2) | O2—Ni1—O1i | 89.64 (8) |
| C12—C8—C9 | 116.5 (2) | O2i—Ni1—O1i | 90.36 (8) |
| C12—C8—C7 | 122.2 (2) | N1i—Ni1—O1i | 91.55 (7) |
| C9—C8—C7 | 121.3 (2) | N1—Ni1—O1i | 88.45 (7) |
| C10—C9—C8 | 119.6 (2) | O1—Ni1—O1i | 180.0 |
| C10—C9—H9A | 120.2 | Ni1—O1—H1A | 117 (2) |
| C8—C9—H9A | 120.2 | Ni1—O1—H1B | 115 (2) |
| N5—C10—C9 | 124.3 (2) | H1A—O1—H1B | 104 (3) |
| N5—C10—H10A | 117.8 | Ni1—O2—H2A | 128 (2) |
| C9—C10—H10A | 117.8 | Ni1—O2—H2B | 119 (2) |
| N5—C11—C12 | 124.1 (2) | H2A—O2—H2B | 103 (3) |
| N5—C11—H11A | 118.0 | H3A—O3—H3B | 106 (3) |
| C12—C11—H11A | 118.0 | ||
| N1—C1—C2—C3 | −0.5 (4) | C4—C5—N1—Ni1 | 178.32 (19) |
| C1—C2—C3—C4 | 1.7 (3) | N4—C6—N2—N3 | −0.5 (3) |
| C1—C2—C3—C6 | −175.6 (2) | C3—C6—N2—N3 | 175.4 (2) |
| C2—C3—C4—C5 | −1.7 (4) | N4—C7—N3—N2 | −0.2 (3) |
| C6—C3—C4—C5 | 175.6 (2) | C8—C7—N3—N2 | 177.4 (2) |
| C3—C4—C5—N1 | 0.5 (4) | C6—N2—N3—C7 | 0.4 (2) |
| C4—C3—C6—N2 | 179.4 (2) | N2—C6—N4—C7 | 0.4 (3) |
| C2—C3—C6—N2 | −3.4 (3) | C3—C6—N4—C7 | −175.3 (2) |
| C4—C3—C6—N4 | −5.2 (4) | N3—C7—N4—C6 | −0.2 (3) |
| C2—C3—C6—N4 | 172.1 (2) | C8—C7—N4—C6 | −177.6 (2) |
| N3—C7—C8—C12 | −172.1 (2) | C9—C10—N5—C11 | 1.0 (4) |
| N4—C7—C8—C12 | 5.1 (4) | C12—C11—N5—C10 | −0.2 (4) |
| N3—C7—C8—C9 | 4.9 (4) | C1—N1—Ni1—O2 | −142.48 (19) |
| N4—C7—C8—C9 | −177.8 (2) | C5—N1—Ni1—O2 | 40.10 (19) |
| C12—C8—C9—C10 | 0.6 (4) | C1—N1—Ni1—O2i | 37.52 (19) |
| C7—C8—C9—C10 | −176.6 (2) | C5—N1—Ni1—O2i | −139.90 (19) |
| C8—C9—C10—N5 | −1.2 (5) | C1—N1—Ni1—N1i | 139 (100) |
| N5—C11—C12—C8 | −0.4 (4) | C5—N1—Ni1—N1i | −39 (100) |
| C9—C8—C12—C11 | 0.2 (4) | C1—N1—Ni1—O1 | −52.15 (19) |
| C7—C8—C12—C11 | 177.3 (2) | C5—N1—Ni1—O1 | 130.43 (19) |
| C2—C1—N1—C5 | −0.7 (4) | C1—N1—Ni1—O1i | 127.85 (19) |
| C2—C1—N1—Ni1 | −178.26 (18) | C5—N1—Ni1—O1i | −49.57 (19) |
| C4—C5—N1—C1 | 0.8 (4) |
| H··· | ||||
| O2—H2A···O3ii | 0.82 (3) | 2.03 (3) | 2.818 (3) | 160 (3) |
| O3—H3A···N4iii | 0.85 (3) | 2.09 (3) | 2.939 (3) | 172 (3) |
| O3—H3B···N5iv | 0.86 (4) | 1.94 (4) | 2.789 (3) | 173 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2—H2 | 0.82 (3) | 2.03 (3) | 2.818 (3) | 160 (3) |
| O3—H3 | 0.85 (3) | 2.09 (3) | 2.939 (3) | 172 (3) |
| O3—H3 | 0.86 (4) | 1.94 (4) | 2.789 (3) | 173 (3) |
Symmetry codes: (i) ; (ii) ; (iii) .