Literature DB >> 21583408

Tetra-aqua-bis(3,5-di-4-pyridyl-1,2,4-triazolato-κN)nickel(II) dihydrate.

Lin Yi Dong1.   

Abstract

The Ni(II) atom in the title compound, [Ni(C(12)H(8)N(5))(2)(H(2)O)(4)]·2H(2)O, lies on a center of inversion and is coordinated by the N atoms of two 3,5-di-4-pyridine-1,2,4-triazolate ligands and by four water O atoms in a slightly distorted octa-hedral geometry. The coordinated and uncoordinated water mol-ecules inter-act with the N-heterocycles through O-H⋯N and O-H⋯O hydrogen bonds, generating a three-dimensional supra-molecular architecture.

Entities:  

Year:  2009        PMID: 21583408      PMCID: PMC2977209          DOI: 10.1107/S1600536809027688

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For magnetic studies of transition metal complexes with 1,2,4- triazole derivatives, see: Haasnoot (2000 ▶). For 3,5-di-4-pyridine-1,2,4-triazole, see: Zhang et al. (2005 ▶, 2006 ▶). For the synthesis, see: Basu & Dutta (1964 ▶).

Experimental

Crystal data

[Ni(C12H8N5)2(H2O)4]·2H2O M = 611.27 Monoclinic, a = 7.3390 (15) Å b = 15.653 (3) Å c = 11.829 (2) Å β = 107.20 (3)° V = 1298.1 (5) Å3 Z = 2 Mo Kα radiation μ = 0.81 mm−1 T = 293 K 0.43 × 0.27 × 0.21 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.722, T max = 0.848 10883 measured reflections 2344 independent reflections 2131 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.078 S = 1.14 2344 reflections 211 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.34 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1999 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809027688/hg2531sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809027688/hg2531Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C12H8N5)2(H2O)4]·2H2OF(000) = 636
Mr = 611.27Dx = 1.564 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 467 reflections
a = 7.3390 (15) Åθ = 1.5–25.3°
b = 15.653 (3) ŵ = 0.81 mm1
c = 11.829 (2) ÅT = 293 K
β = 107.20 (3)°Block, green
V = 1298.1 (5) Å30.43 × 0.27 × 0.21 mm
Z = 2
Bruker SMART CCD area-detector diffractometer2344 independent reflections
Radiation source: fine-focus sealed tube2131 reflections with I > 2σ(I)
graphiteRint = 0.034
φ and ω scansθmax = 25.2°, θmin = 3.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −8→8
Tmin = 0.722, Tmax = 0.848k = −18→18
10883 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.078H atoms treated by a mixture of independent and constrained refinement
S = 1.14w = 1/[σ2(Fo2) + (0.0259P)2 + 1.0454P] where P = (Fo2 + 2Fc2)/3
2344 reflections(Δ/σ)max < 0.001
211 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.34 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.4927 (3)0.33129 (14)0.6238 (2)0.0265 (5)
H1C0.54020.36450.69140.032*
C20.4672 (3)0.24522 (14)0.6376 (2)0.0272 (5)
H2C0.49830.22160.71310.033*
C30.3951 (3)0.19348 (13)0.53900 (19)0.0218 (5)
C40.3570 (4)0.23293 (14)0.4292 (2)0.0287 (5)
H4A0.31170.20100.36030.034*
C50.3864 (4)0.31953 (14)0.4228 (2)0.0283 (5)
H5A0.35900.34460.34830.034*
C60.3545 (3)0.10302 (13)0.55253 (19)0.0217 (5)
C70.2505 (3)−0.02231 (13)0.52360 (19)0.0224 (5)
C80.1688 (3)−0.10334 (14)0.46845 (19)0.0232 (5)
C90.1536 (4)−0.17397 (16)0.5368 (2)0.0370 (6)
H9A0.1892−0.16970.61890.044*
C100.0858 (4)−0.24977 (16)0.4823 (2)0.0411 (7)
H10A0.0794−0.29620.53010.049*
C110.0428 (4)−0.19348 (16)0.3005 (2)0.0359 (6)
H11A0.0042−0.19950.21860.043*
C120.1111 (4)−0.11487 (15)0.3471 (2)0.0312 (6)
H12A0.1184−0.06990.29710.037*
H1A0.413 (5)0.550 (2)0.686 (3)0.051 (9)*
H2A0.149 (5)0.527 (2)0.358 (3)0.051 (10)*
H3A0.163 (5)0.426 (2)0.782 (3)0.054 (10)*
H1B0.283 (5)0.493 (2)0.633 (3)0.055 (10)*
H2B0.257 (4)0.5122 (18)0.292 (3)0.048 (9)*
H3B0.077 (5)0.372 (2)0.691 (3)0.062 (10)*
N10.4525 (3)0.36961 (11)0.51811 (16)0.0237 (4)
N20.3943 (3)0.06670 (12)0.65942 (16)0.0279 (5)
N30.3259 (3)−0.01470 (12)0.64046 (17)0.0290 (5)
N40.2645 (3)0.04985 (11)0.46332 (16)0.0226 (4)
N50.0286 (3)−0.26126 (13)0.3656 (2)0.0360 (5)
Ni10.50000.50000.50000.01983 (13)
O10.3476 (3)0.53202 (12)0.61834 (15)0.0275 (4)
O20.2507 (3)0.50476 (11)0.35989 (15)0.0287 (4)
O30.1179 (3)0.42339 (11)0.70636 (17)0.0314 (4)
U11U22U33U12U13U23
C10.0368 (14)0.0208 (12)0.0204 (12)−0.0048 (10)0.0062 (10)−0.0025 (9)
C20.0390 (14)0.0215 (12)0.0197 (12)−0.0036 (10)0.0066 (10)0.0023 (9)
C30.0249 (12)0.0178 (11)0.0234 (12)−0.0009 (9)0.0083 (9)−0.0001 (9)
C40.0434 (15)0.0199 (12)0.0204 (12)−0.0063 (11)0.0057 (10)−0.0029 (9)
C50.0416 (15)0.0216 (12)0.0199 (12)−0.0021 (10)0.0062 (10)0.0026 (9)
C60.0269 (12)0.0174 (11)0.0209 (11)−0.0006 (9)0.0073 (9)0.0001 (9)
C70.0281 (12)0.0162 (11)0.0224 (11)−0.0009 (9)0.0068 (9)−0.0005 (8)
C80.0239 (12)0.0188 (11)0.0254 (12)−0.0003 (9)0.0051 (9)−0.0010 (9)
C90.0588 (18)0.0260 (13)0.0251 (13)−0.0116 (12)0.0108 (12)0.0001 (10)
C100.0624 (19)0.0225 (13)0.0392 (16)−0.0129 (13)0.0161 (13)0.0020 (11)
C110.0424 (15)0.0314 (14)0.0280 (13)−0.0042 (11)0.0014 (11)−0.0060 (11)
C120.0400 (15)0.0221 (12)0.0269 (13)−0.0029 (10)0.0031 (11)0.0039 (10)
N10.0310 (11)0.0168 (9)0.0223 (10)−0.0024 (8)0.0067 (8)−0.0006 (7)
N20.0413 (12)0.0175 (10)0.0232 (10)−0.0064 (9)0.0070 (9)0.0002 (8)
N30.0429 (12)0.0189 (10)0.0232 (10)−0.0071 (9)0.0067 (9)0.0009 (8)
N40.0281 (10)0.0161 (9)0.0222 (10)−0.0016 (8)0.0053 (8)0.0011 (7)
N50.0408 (13)0.0244 (11)0.0416 (13)−0.0077 (10)0.0102 (10)−0.0075 (9)
Ni10.0263 (2)0.0140 (2)0.0186 (2)−0.00180 (17)0.00564 (16)−0.00025 (16)
O10.0322 (10)0.0267 (9)0.0246 (9)−0.0036 (8)0.0101 (8)−0.0021 (7)
O20.0288 (10)0.0329 (10)0.0228 (9)0.0044 (8)0.0054 (7)−0.0001 (7)
O30.0420 (11)0.0222 (9)0.0288 (10)−0.0034 (8)0.0088 (8)−0.0015 (7)
C1—N11.339 (3)C10—N51.331 (3)
C1—C21.377 (3)C10—H10A0.9300
C1—H1C0.9300C11—N51.333 (3)
C2—C31.390 (3)C11—C121.380 (3)
C2—H2C0.9300C11—H11A0.9300
C3—C41.389 (3)C12—H12A0.9300
C3—C61.465 (3)N1—Ni12.0921 (18)
C4—C51.378 (3)N2—N31.364 (3)
C4—H4A0.9300Ni1—O22.0753 (19)
C5—N11.341 (3)Ni1—O2i2.0753 (19)
C5—H5A0.9300Ni1—N1i2.0921 (18)
C6—N21.337 (3)Ni1—O12.0945 (17)
C6—N41.353 (3)Ni1—O1i2.0945 (17)
C7—N31.334 (3)O1—H1A0.85 (3)
C7—N41.356 (3)O1—H1B0.82 (3)
C7—C81.471 (3)O2—H2A0.82 (3)
C8—C121.384 (3)O2—H2B0.82 (3)
C8—C91.393 (3)O3—H3A0.85 (3)
C9—C101.372 (3)O3—H3B0.86 (4)
C9—H9A0.9300
N1—C1—C2123.3 (2)C11—C12—C8119.6 (2)
N1—C1—H1C118.3C11—C12—H12A120.2
C2—C1—H1C118.3C8—C12—H12A120.2
C1—C2—C3120.1 (2)C1—N1—C5116.65 (19)
C1—C2—H2C119.9C1—N1—Ni1122.37 (14)
C3—C2—H2C119.9C5—N1—Ni1120.94 (15)
C4—C3—C2116.5 (2)C6—N2—N3105.95 (17)
C4—C3—C6122.7 (2)C7—N3—N2105.88 (17)
C2—C3—C6120.7 (2)C6—N4—C7101.41 (18)
C5—C4—C3119.8 (2)C10—N5—C11115.9 (2)
C5—C4—H4A120.1O2—Ni1—O2i180.0
C3—C4—H4A120.1O2—Ni1—N1i90.99 (7)
N1—C5—C4123.5 (2)O2i—Ni1—N1i89.01 (7)
N1—C5—H5A118.2O2—Ni1—N189.01 (7)
C4—C5—H5A118.2O2i—Ni1—N190.99 (7)
N2—C6—N4113.30 (19)N1i—Ni1—N1180.0
N2—C6—C3121.29 (19)O2—Ni1—O190.36 (8)
N4—C6—C3125.27 (19)O2i—Ni1—O189.64 (8)
N3—C7—N4113.45 (19)N1i—Ni1—O188.45 (7)
N3—C7—C8121.77 (19)N1—Ni1—O191.55 (7)
N4—C7—C8124.7 (2)O2—Ni1—O1i89.64 (8)
C12—C8—C9116.5 (2)O2i—Ni1—O1i90.36 (8)
C12—C8—C7122.2 (2)N1i—Ni1—O1i91.55 (7)
C9—C8—C7121.3 (2)N1—Ni1—O1i88.45 (7)
C10—C9—C8119.6 (2)O1—Ni1—O1i180.0
C10—C9—H9A120.2Ni1—O1—H1A117 (2)
C8—C9—H9A120.2Ni1—O1—H1B115 (2)
N5—C10—C9124.3 (2)H1A—O1—H1B104 (3)
N5—C10—H10A117.8Ni1—O2—H2A128 (2)
C9—C10—H10A117.8Ni1—O2—H2B119 (2)
N5—C11—C12124.1 (2)H2A—O2—H2B103 (3)
N5—C11—H11A118.0H3A—O3—H3B106 (3)
C12—C11—H11A118.0
N1—C1—C2—C3−0.5 (4)C4—C5—N1—Ni1178.32 (19)
C1—C2—C3—C41.7 (3)N4—C6—N2—N3−0.5 (3)
C1—C2—C3—C6−175.6 (2)C3—C6—N2—N3175.4 (2)
C2—C3—C4—C5−1.7 (4)N4—C7—N3—N2−0.2 (3)
C6—C3—C4—C5175.6 (2)C8—C7—N3—N2177.4 (2)
C3—C4—C5—N10.5 (4)C6—N2—N3—C70.4 (2)
C4—C3—C6—N2179.4 (2)N2—C6—N4—C70.4 (3)
C2—C3—C6—N2−3.4 (3)C3—C6—N4—C7−175.3 (2)
C4—C3—C6—N4−5.2 (4)N3—C7—N4—C6−0.2 (3)
C2—C3—C6—N4172.1 (2)C8—C7—N4—C6−177.6 (2)
N3—C7—C8—C12−172.1 (2)C9—C10—N5—C111.0 (4)
N4—C7—C8—C125.1 (4)C12—C11—N5—C10−0.2 (4)
N3—C7—C8—C94.9 (4)C1—N1—Ni1—O2−142.48 (19)
N4—C7—C8—C9−177.8 (2)C5—N1—Ni1—O240.10 (19)
C12—C8—C9—C100.6 (4)C1—N1—Ni1—O2i37.52 (19)
C7—C8—C9—C10−176.6 (2)C5—N1—Ni1—O2i−139.90 (19)
C8—C9—C10—N5−1.2 (5)C1—N1—Ni1—N1i139 (100)
N5—C11—C12—C8−0.4 (4)C5—N1—Ni1—N1i−39 (100)
C9—C8—C12—C110.2 (4)C1—N1—Ni1—O1−52.15 (19)
C7—C8—C12—C11177.3 (2)C5—N1—Ni1—O1130.43 (19)
C2—C1—N1—C5−0.7 (4)C1—N1—Ni1—O1i127.85 (19)
C2—C1—N1—Ni1−178.26 (18)C5—N1—Ni1—O1i−49.57 (19)
C4—C5—N1—C10.8 (4)
D—H···AD—HH···AD···AD—H···A
O2—H2A···O3ii0.82 (3)2.03 (3)2.818 (3)160 (3)
O3—H3A···N4iii0.85 (3)2.09 (3)2.939 (3)172 (3)
O3—H3B···N5iv0.86 (4)1.94 (4)2.789 (3)173 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2A⋯O3i0.82 (3)2.03 (3)2.818 (3)160 (3)
O3—H3A⋯N4ii0.85 (3)2.09 (3)2.939 (3)172 (3)
O3—H3B⋯N5iii0.86 (4)1.94 (4)2.789 (3)173 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

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Journal:  J Org Chem       Date:  1965-10       Impact factor: 4.354

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