Literature DB >> 21583384

Bis(creatininium) tetra-chlorido-cadmate(II).

Sihem Boufas, Toma-Nardjes Mouas, Patricia Bénard-Rocherullé.   

Abstract

In the title compound, (C(4)H(8)N(3)O)(2)[CdCl(4)], the asymmetric unit comprises two creatininium cations and one tetra-chloridocadmate anion. Cd⋯O secondary bonding links one of the two imidazole rings and the anion into ion pairs. The free and bound cations form layers between which the [CdCl(4)](2-) anions are sandwiched. The Cd(II) atom adopts a distorted trigonal-bipyramidal geometry in which the Cd⋯O bond is axial. Inter-molecular N-H⋯Cl hydrogen bonds form a two-dimensional network parallel to (001) which ensures the junction between creatininium cations and [CdCl(4)](2-) anions.

Entities:  

Year:  2009        PMID: 21583384      PMCID: PMC2977141          DOI: 10.1107/S1600536809026944

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

An abnormal level of creatinine in biological fluids is an indicator of various medical conditions, see: Narayanan & Appleton (1980 ▶). For inter­actions between creatinine and biologically important metal ions, see: Canty et al. (1979 ▶). Different complex species are formed depending on the reaction conditions, see: Nishida & Kida (1985 ▶). For bond lengths in the neutral creatinine mol­ecule, see: Smith & White (2001 ▶) and in creatinium compounds, see: Wilkinson & Harrison (2005 ▶). For Cd—Cl bond distances in dichlorido­bis(creatinine)cadmium(II), see: Okabe et al. (1995 ▶). For Cl—Cd—Cl bond angles in bis­(2,3,5-triphenyl­tetra­zolium)tetra­chloridocadmate(II), see: Zhang et al. (2007 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶); Etter et al. (1990 ▶).

Experimental

Crystal data

(C4H8N3O)2[CdCl4] M = 482.48 Triclinic, a = 7.5203 (4) Å b = 7.6761 (3) Å c = 15.0757 (7) Å α = 79.476 (2)° β = 85.438 (5)° γ = 83.214 (3)° V = 848.14 (7) Å3 Z = 2 Mo Kα radiation μ = 1.93 mm−1 T = 100 K 0.25 × 0.15 × 0.1 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick,1996 ▶) T min = 0.644, T max = 0.831 10950 measured reflections 3843 independent reflections 3711 reflections with I > 2σ(I) R int = 0.064

Refinement

R[F 2 > 2σ(F 2)] = 0.019 wR(F 2) = 0.048 S = 1.11 3843 reflections 216 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.77 e Å−3 Δρmin = −0.54 e Å−3 Data collection: COLLECT (Nonius, 2002 ▶); cell refinement: DENZO and SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO and SCALEPACK; program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PARST (Nardelli, 1995 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809026944/bt2978sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809026944/bt2978Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C4H8N3O)2[CdCl4]Z = 2
Mr = 482.48F(000) = 476
Triclinic, P1Dx = 1.889 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.5203 (4) ÅCell parameters from 8132 reflections
b = 7.6761 (3) Åθ = 2.7–27.4°
c = 15.0757 (7) ŵ = 1.93 mm1
α = 79.476 (2)°T = 100 K
β = 85.438 (5)°Plates, colourless
γ = 83.214 (3)°0.25 × 0.15 × 0.1 mm
V = 848.14 (7) Å3
Nonius KappaCCD diffractometer3843 independent reflections
Radiation source: fine-focus sealed X-ray tube3711 reflections with I > 2σ(I)
graphiteRint = 0.064
φ scans, and ω scans with κ offsetsθmax = 27.4°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Sheldrick,1996)h = −9→9
Tmin = 0.644, Tmax = 0.831k = −9→9
10950 measured reflectionsl = −19→19
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.019H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.048w = 1/[σ2(Fo2) + (0.0154P)2 + 0.4426P] where P = (Fo2 + 2Fc2)/3
S = 1.11(Δ/σ)max = 0.002
3843 reflectionsΔρmax = 0.77 e Å3
216 parametersΔρmin = −0.54 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.08 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Cd10.066723 (15)0.225860 (16)0.280951 (8)0.01066 (5)
Cl1−0.04670 (6)0.54257 (6)0.24433 (3)0.01616 (9)
Cl20.36325 (5)0.13754 (7)0.34349 (3)0.01814 (10)
Cl30.14704 (6)0.17937 (6)0.11755 (3)0.01524 (9)
Cl4−0.15980 (5)0.01360 (6)0.32005 (3)0.01418 (9)
O1−0.01715 (17)0.28215 (19)0.45064 (9)0.0176 (3)
N4−0.3242 (2)0.2622 (2)0.47014 (11)0.0130 (3)
N5−0.38183 (19)0.3218 (2)0.60861 (10)0.0134 (3)
N6−0.6224 (2)0.2535 (2)0.53371 (12)0.0179 (3)
C5−0.1579 (2)0.2895 (2)0.49571 (12)0.0127 (3)
C6−0.4526 (2)0.2762 (2)0.53994 (12)0.0126 (3)
C7−0.1888 (2)0.3305 (3)0.59036 (12)0.0144 (4)
H7A−0.12080.24270.6330.017*
H7B−0.15650.44810.59290.017*
C8−0.4703 (3)0.3343 (3)0.69777 (13)0.0213 (4)
H8A−0.42730.42920.72080.026*
H8B−0.4440.22390.73830.026*
H8C−0.59760.3580.69260.026*
O20.40943 (18)0.36919 (18)−0.10195 (9)0.0191 (3)
N10.2474 (2)0.5415 (2)−0.00578 (11)0.0139 (3)
C10.3552 (2)0.5126 (2)−0.08243 (12)0.0138 (3)
C20.3922 (2)0.6952 (2)−0.13185 (12)0.0127 (3)
H2A0.520.7038−0.14230.015*
H2B0.33640.7239−0.18930.015*
N20.1430 (2)0.7800 (2)0.07081 (11)0.0176 (3)
N30.3113 (2)0.8115 (2)−0.06971 (10)0.0129 (3)
C30.2295 (2)0.7185 (2)0.00098 (12)0.0130 (3)
C40.3227 (3)1.0033 (2)−0.08903 (13)0.0166 (4)
H4A0.25741.0553−0.14130.02*
H4B0.44611.0256−0.10040.02*
H4C0.27221.0551−0.03810.02*
H4−0.340 (3)0.224 (3)0.4298 (17)0.017 (6)*
H66−0.689 (4)0.238 (3)0.5785 (19)0.032 (7)*
H6−0.653 (4)0.215 (4)0.486 (2)0.038 (8)*
H10.212 (3)0.462 (3)0.0292 (17)0.024 (6)*
H220.092 (3)0.704 (3)0.1156 (17)0.024 (6)*
H20.142 (3)0.884 (4)0.0753 (18)0.030 (7)*
U11U22U33U12U13U23
Cd10.00992 (7)0.01213 (8)0.01001 (7)−0.00125 (5)−0.00016 (5)−0.00229 (5)
Cl10.0200 (2)0.0126 (2)0.0151 (2)0.00070 (16)−0.00008 (16)−0.00248 (16)
Cl20.01099 (18)0.0271 (3)0.0158 (2)0.00115 (16)−0.00235 (15)−0.00372 (18)
Cl30.0220 (2)0.0142 (2)0.0106 (2)−0.00484 (16)0.00282 (16)−0.00459 (16)
Cl40.01278 (18)0.0140 (2)0.0155 (2)−0.00334 (15)0.00140 (15)−0.00161 (16)
O10.0146 (6)0.0226 (7)0.0159 (7)−0.0034 (5)0.0043 (5)−0.0055 (5)
N40.0150 (7)0.0162 (8)0.0090 (8)−0.0040 (6)0.0002 (6)−0.0044 (6)
N50.0122 (7)0.0171 (8)0.0110 (7)−0.0009 (6)0.0017 (5)−0.0042 (6)
N60.0132 (7)0.0249 (9)0.0151 (8)−0.0055 (6)−0.0003 (6)−0.0005 (7)
C50.0147 (8)0.0111 (9)0.0121 (9)−0.0020 (6)0.0001 (6)−0.0013 (7)
C60.0144 (8)0.0101 (8)0.0120 (8)−0.0014 (6)0.0008 (6)0.0009 (7)
C70.0130 (8)0.0181 (9)0.0129 (9)−0.0014 (6)0.0001 (6)−0.0052 (7)
C80.0223 (9)0.0278 (11)0.0132 (9)−0.0003 (8)0.0066 (7)−0.0072 (8)
O20.0242 (7)0.0130 (7)0.0206 (7)0.0005 (5)−0.0015 (5)−0.0059 (5)
N10.0178 (7)0.0111 (8)0.0125 (8)−0.0033 (6)0.0006 (6)−0.0009 (6)
C10.0137 (8)0.0155 (9)0.0130 (9)−0.0013 (6)−0.0040 (7)−0.0032 (7)
C20.0148 (8)0.0135 (9)0.0102 (8)−0.0009 (6)0.0008 (6)−0.0039 (7)
N20.0241 (8)0.0143 (9)0.0143 (8)−0.0038 (6)0.0052 (6)−0.0039 (7)
N30.0170 (7)0.0105 (8)0.0116 (7)−0.0018 (6)0.0014 (6)−0.0034 (6)
C30.0140 (8)0.0125 (9)0.0129 (9)−0.0022 (6)−0.0019 (6)−0.0021 (7)
C40.0226 (9)0.0115 (9)0.0158 (9)−0.0026 (7)0.0017 (7)−0.0031 (7)
Cd1—Cl12.4571 (5)C8—H8B0.96
Cd1—Cl42.4596 (4)C8—H8C0.96
Cd1—Cl22.4627 (4)O2—C11.208 (2)
Cd1—Cl32.5678 (4)N1—C31.371 (2)
Cd1—O12.6854 (13)N1—C11.394 (2)
O1—C51.213 (2)N1—H10.79 (3)
N4—C61.380 (2)C1—C21.508 (3)
N4—C51.387 (2)C2—N31.460 (2)
N4—H40.75 (2)C2—H2A0.97
N5—C61.319 (2)C2—H2B0.97
N5—C71.463 (2)N2—C31.325 (2)
N5—C81.466 (2)N2—H220.90 (3)
N6—C61.322 (2)N2—H20.81 (3)
N6—H660.81 (3)N3—C31.321 (2)
N6—H60.87 (3)N3—C41.459 (2)
C5—C71.511 (2)C4—H4A0.96
C7—H7A0.97C4—H4B0.96
C7—H7B0.97C4—H4C0.96
C8—H8A0.96
Cl1—Cd1—Cl4116.512 (15)N5—C8—H8B109.5
Cl1—Cd1—Cl2120.122 (17)H8A—C8—H8B109.5
Cl4—Cd1—Cl2117.621 (16)N5—C8—H8C109.5
Cl1—Cd1—Cl396.649 (15)H8A—C8—H8C109.5
Cl4—Cd1—Cl398.074 (15)H8B—C8—H8C109.5
Cl2—Cd1—Cl399.319 (15)C3—N1—C1110.39 (15)
Cl1—Cd1—O182.18 (3)C3—N1—H1127.6 (18)
Cl4—Cd1—O182.85 (3)C1—N1—H1121.8 (18)
Cl2—Cd1—O180.95 (3)O2—C1—N1125.86 (18)
Cl3—Cd1—O1178.75 (3)O2—C1—C2128.57 (17)
C5—O1—Cd1132.55 (13)N1—C1—C2105.55 (15)
C6—N4—C5110.28 (15)N3—C2—C1102.80 (14)
C6—N4—H4122.8 (18)N3—C2—H2A111.2
C5—N4—H4125.3 (18)C1—C2—H2A111.2
C6—N5—C7110.56 (14)N3—C2—H2B111.2
C6—N5—C8126.70 (15)C1—C2—H2B111.2
C7—N5—C8122.02 (15)H2A—C2—H2B109.1
C6—N6—H66120.4 (19)C3—N2—H22119.4 (15)
C6—N6—H6119.0 (19)C3—N2—H2120.6 (19)
H66—N6—H6117 (3)H22—N2—H2120 (2)
O1—C5—N4126.58 (18)C3—N3—C4127.85 (15)
O1—C5—C7127.43 (17)C3—N3—C2110.50 (15)
N4—C5—C7105.99 (14)C4—N3—C2121.64 (15)
N5—C6—N6126.98 (17)N3—C3—N2127.02 (17)
N5—C6—N4110.34 (15)N3—C3—N1110.42 (15)
N6—C6—N4122.61 (17)N2—C3—N1122.56 (17)
N5—C7—C5102.69 (14)N3—C4—H4A109.5
N5—C7—H7A111.2N3—C4—H4B109.5
C5—C7—H7A111.2H4A—C4—H4B109.5
N5—C7—H7B111.2N3—C4—H4C109.5
C5—C7—H7B111.2H4A—C4—H4C109.5
H7A—C7—H7B109.1H4B—C4—H4C109.5
N5—C8—H8A109.5
Cl1—Cd1—O1—C579.99 (16)O1—C5—C7—N5179.62 (18)
Cl4—Cd1—O1—C5−38.13 (16)N4—C5—C7—N5−0.20 (19)
Cl2—Cd1—O1—C5−157.67 (17)C3—N1—C1—O2172.47 (17)
Cd1—O1—C5—N42.7 (3)C3—N1—C1—C2−5.74 (19)
Cd1—O1—C5—C7−177.09 (13)O2—C1—C2—N3−172.51 (18)
C6—N4—C5—O1178.19 (18)N1—C1—C2—N35.63 (18)
C6—N4—C5—C7−2.0 (2)C1—C2—N3—C3−3.83 (19)
C7—N5—C6—N6179.08 (18)C1—C2—N3—C4177.23 (15)
C8—N5—C6—N68.7 (3)C4—N3—C3—N2−1.6 (3)
C7—N5—C6—N4−3.8 (2)C2—N3—C3—N2179.59 (18)
C8—N5—C6—N4−174.16 (17)C4—N3—C3—N1179.35 (16)
C5—N4—C6—N53.7 (2)C2—N3—C3—N10.5 (2)
C5—N4—C6—N6−179.05 (17)C1—N1—C3—N33.5 (2)
C6—N5—C7—C52.43 (19)C1—N1—C3—N2−175.66 (17)
C8—N5—C7—C5173.30 (16)
D—H···AD—HH···AD···AD—H···A
N1—H1···Cl30.79 (2)2.41 (2)3.1840 (16)168 (2)
N2—H2···Cl3i0.80 (3)2.48 (3)3.273 (2)170 (3)
N4—H4···Cl40.75 (2)2.70 (2)3.2967 (17)139 (2)
N6—H6···Cl2ii0.88 (3)2.32 (3)3.1673 (18)161 (3)
N2—H22···Cl10.90 (2)2.34 (2)3.2368 (18)171 (2)
N6—H66···Cl4iii0.81 (3)2.55 (3)3.2117 (17)140 (2)
Cd1—Cl12.4571 (5)
Cd1—Cl42.4596 (4)
Cd1—Cl22.4627 (4)
Cd1—Cl32.5678 (4)
Cd1—O12.6854 (13)
Cl1—Cd1—Cl4116.512 (15)
Cl1—Cd1—Cl2120.122 (17)
Cl4—Cd1—Cl2117.621 (16)
Cl1—Cd1—Cl396.649 (15)
Cl4—Cd1—Cl398.074 (15)
Cl2—Cd1—Cl399.319 (15)
Cl1—Cd1—O182.18 (3)
Cl4—Cd1—O182.85 (3)
Cl2—Cd1—O180.95 (3)
Cl3—Cd1—O1178.75 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯Cl30.79 (2)2.41 (2)3.1840 (16)168 (2)
N2—H2⋯Cl3i0.80 (3)2.48 (3)3.273 (2)170 (3)
N4—H4⋯Cl40.75 (2)2.70 (2)3.2967 (17)139 (2)
N6—H6⋯Cl2ii0.88 (3)2.32 (3)3.1673 (18)161 (3)
N2—H22⋯Cl10.90 (2)2.34 (2)3.2368 (18)171 (2)
N6—H66⋯Cl4iii0.81 (3)2.55 (3)3.2117 (17)140 (2)

Symmetry codes: (i) ; (ii) ; (iii) .

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