Literature DB >> 21583344

Aqua-(2,2'-bipyridine)bis-(4-hydroxy-benzoato)zinc(II).

Bing-Yu Zhang1, Jing-Jing Nie, Duan-Jun Xu.   

Abstract

In the title complex, [Zn(C(7)H(5)O(3))(2)(C(10)H(8)N(2))(H(2)O)], the Zn(II) ion is coordinated by two 4-hydroxy-benzoate anions, one 2,2'-bipyridine mol-ecule and one water mol-ecule and displays a distorted octa-hedral geometry. One Zn-O bond [2.5300 (15) Å] is much longer than the others in the mol-ecule. In the crystal structure, the face-to-face separation of 3.547 (9) Å suggests no π-π stacking between parallel bipyridine ring systems, and an extensive O-H⋯O hydrogen-bonding network between the coordinated water molecule, the phenol group and carboxylate O atoms is present.

Entities:  

Year:  2009        PMID: 21583344      PMCID: PMC2977467          DOI: 10.1107/S1600536809025525

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Xu et al. (2007a ▶,b ▶); Li et al. (2005 ▶). For a related structure, see: Kong et al. (2008 ▶). For the smaller metal—O—C bond angle corresponding to the longer coordination bond, see: Li et al. (2005 ▶).

Experimental

Crystal data

[Zn(C7H5O3)2(C10H8N2)(H2O)] M = 513.79 Monoclinic, a = 10.3549 (12) Å b = 19.524 (3) Å c = 11.5544 (18) Å β = 107.97 (2)° V = 2221.9 (6) Å3 Z = 4 Mo Kα radiation μ = 1.16 mm−1 T = 294 K 0.40 × 0.32 × 0.28 mm

Data collection

Rigaku R-AXIS RAPID IP diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.659, T max = 0.724 13723 measured reflections 5092 independent reflections 3794 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.084 S = 1.07 5092 reflections 307 parameters H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.31 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809025525/hk2727sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809025525/hk2727Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C7H5O3)2(C10H8N2)(H2O)]F(000) = 1056
Mr = 513.79Dx = 1.536 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 8786 reflections
a = 10.3549 (12) Åθ = 2.8–25.0°
b = 19.524 (3) ŵ = 1.16 mm1
c = 11.5544 (18) ÅT = 294 K
β = 107.97 (2)°Prism, colorless
V = 2221.9 (6) Å30.40 × 0.32 × 0.28 mm
Z = 4
Rigaku R-AXIS RAPID IP diffractometer5092 independent reflections
Radiation source: fine-focus sealed tube3794 reflections with I > 2σ(I)
graphiteRint = 0.028
Detector resolution: 10.00 pixels mm-1θmax = 27.5°, θmin = 2.1°
ω scansh = −13→12
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −16→25
Tmin = 0.659, Tmax = 0.724l = −15→14
13723 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.084H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0381P)2 + 0.2291P] where P = (Fo2 + 2Fc2)/3
5092 reflections(Δ/σ)max = 0.001
307 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = −0.30 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn0.72142 (2)0.523813 (12)0.76441 (2)0.03203 (9)
N10.71413 (18)0.55972 (9)0.93348 (15)0.0364 (4)
N20.50939 (18)0.52685 (8)0.74053 (16)0.0326 (4)
O10.79866 (17)0.40502 (8)0.84339 (14)0.0472 (4)
O20.72447 (15)0.44341 (7)0.65740 (13)0.0390 (4)
O30.90448 (17)0.14372 (8)0.55801 (14)0.0503 (4)
H3A0.86120.13140.47700.075*
O40.69289 (14)0.60029 (7)0.63604 (13)0.0349 (3)
O50.88734 (15)0.59867 (8)0.59074 (13)0.0419 (4)
O60.53361 (16)0.81021 (8)0.20163 (14)0.0473 (4)
H6A0.59400.83480.18160.071*
O70.93531 (15)0.53817 (7)0.80380 (14)0.0418 (4)
H7A0.97550.57460.84750.063*
H7B0.92810.55020.72270.063*
C10.7783 (2)0.39661 (10)0.73229 (19)0.0329 (5)
C20.8162 (2)0.33111 (10)0.68419 (18)0.0293 (4)
C30.8999 (2)0.28391 (10)0.76110 (18)0.0329 (5)
H30.93670.29420.84340.039*
C40.9297 (2)0.22205 (11)0.71799 (18)0.0359 (5)
H40.98710.19110.77060.043*
C50.8738 (2)0.20608 (10)0.59584 (19)0.0342 (5)
C60.7894 (2)0.25250 (11)0.51718 (19)0.0359 (5)
H60.75080.24170.43540.043*
C70.7633 (2)0.31490 (10)0.56143 (18)0.0329 (5)
H70.70930.34670.50810.040*
C80.7700 (2)0.61981 (10)0.57269 (18)0.0315 (5)
C90.7101 (2)0.67051 (10)0.47486 (18)0.0323 (5)
C100.5709 (2)0.67839 (12)0.4277 (2)0.0418 (5)
H100.51430.65160.45790.050*
C110.5143 (2)0.72511 (12)0.3370 (2)0.0442 (6)
H110.42050.72920.30590.053*
C120.5968 (2)0.76610 (11)0.29181 (19)0.0360 (5)
C130.7366 (2)0.75963 (11)0.3390 (2)0.0402 (5)
H130.79280.78750.31030.048*
C140.7924 (2)0.71194 (11)0.42857 (19)0.0386 (5)
H140.88630.70730.45850.046*
C150.8215 (3)0.56939 (13)1.0329 (2)0.0484 (6)
H150.90750.55841.02900.058*
C160.8100 (3)0.59469 (14)1.1398 (2)0.0607 (7)
H160.88660.60091.20690.073*
C170.6831 (3)0.61079 (14)1.1463 (2)0.0614 (8)
H170.67270.62861.21760.074*
C180.5722 (3)0.60022 (13)1.0462 (2)0.0532 (7)
H180.48550.61051.04920.064*
C190.5899 (2)0.57419 (10)0.9407 (2)0.0367 (5)
C200.4749 (2)0.55895 (11)0.82961 (19)0.0359 (5)
C210.3423 (3)0.57615 (13)0.8165 (2)0.0528 (6)
H210.31990.59840.87880.063*
C220.2426 (3)0.55975 (15)0.7089 (3)0.0590 (7)
H220.15260.57150.69810.071*
C230.2768 (3)0.52628 (13)0.6190 (2)0.0512 (6)
H230.21110.51420.54680.061*
C240.4112 (2)0.51086 (12)0.6382 (2)0.0424 (5)
H240.43510.48820.57700.051*
U11U22U33U12U13U23
Zn0.03499 (15)0.02836 (14)0.03540 (15)0.00098 (10)0.01475 (11)−0.00214 (10)
N10.0381 (11)0.0359 (10)0.0350 (10)−0.0019 (8)0.0111 (8)−0.0014 (8)
N20.0357 (10)0.0325 (10)0.0333 (9)−0.0021 (7)0.0159 (8)−0.0029 (8)
O10.0717 (12)0.0333 (9)0.0397 (9)0.0048 (8)0.0215 (8)−0.0022 (7)
O20.0454 (9)0.0282 (8)0.0428 (9)0.0082 (7)0.0128 (7)0.0003 (7)
O30.0730 (12)0.0339 (9)0.0415 (9)0.0193 (8)0.0141 (8)−0.0036 (7)
O40.0375 (8)0.0302 (8)0.0424 (8)0.0048 (6)0.0204 (7)0.0063 (6)
O50.0306 (9)0.0527 (10)0.0440 (9)0.0025 (7)0.0140 (7)0.0054 (7)
O60.0439 (10)0.0430 (9)0.0572 (10)−0.0002 (7)0.0186 (8)0.0184 (8)
O70.0359 (9)0.0431 (9)0.0450 (9)−0.0054 (7)0.0103 (7)0.0000 (7)
C10.0329 (11)0.0263 (11)0.0414 (12)−0.0033 (9)0.0142 (10)−0.0021 (9)
C20.0296 (11)0.0252 (10)0.0364 (11)−0.0009 (8)0.0149 (9)0.0000 (8)
C30.0352 (12)0.0324 (11)0.0311 (11)0.0012 (9)0.0102 (9)−0.0009 (9)
C40.0408 (13)0.0321 (12)0.0341 (11)0.0101 (9)0.0105 (9)0.0062 (9)
C50.0407 (13)0.0275 (11)0.0387 (12)0.0044 (9)0.0187 (10)−0.0004 (9)
C60.0410 (13)0.0375 (12)0.0293 (11)0.0051 (9)0.0109 (9)−0.0023 (9)
C70.0339 (12)0.0301 (11)0.0357 (12)0.0064 (9)0.0121 (9)0.0054 (9)
C80.0338 (12)0.0277 (11)0.0337 (11)−0.0056 (9)0.0115 (9)−0.0065 (9)
C90.0339 (12)0.0300 (11)0.0345 (11)−0.0029 (9)0.0126 (9)0.0000 (9)
C100.0355 (13)0.0440 (13)0.0496 (14)−0.0061 (10)0.0186 (11)0.0098 (11)
C110.0295 (12)0.0501 (14)0.0534 (14)−0.0022 (10)0.0133 (10)0.0146 (11)
C120.0407 (13)0.0311 (11)0.0381 (12)−0.0024 (9)0.0151 (10)0.0023 (9)
C130.0374 (13)0.0403 (13)0.0460 (14)−0.0113 (10)0.0172 (10)0.0052 (10)
C140.0305 (12)0.0433 (13)0.0426 (13)−0.0080 (9)0.0121 (10)0.0016 (10)
C150.0475 (15)0.0535 (16)0.0415 (14)−0.0066 (11)0.0099 (11)0.0007 (12)
C160.069 (2)0.0658 (19)0.0397 (15)−0.0206 (15)0.0060 (13)−0.0063 (13)
C170.087 (2)0.0605 (18)0.0409 (15)−0.0099 (15)0.0252 (15)−0.0159 (13)
C180.0646 (18)0.0538 (16)0.0480 (15)0.0030 (13)0.0274 (13)−0.0110 (12)
C190.0453 (13)0.0275 (11)0.0409 (12)0.0003 (9)0.0186 (10)−0.0009 (9)
C200.0392 (13)0.0331 (12)0.0399 (12)0.0009 (9)0.0187 (10)0.0001 (10)
C210.0457 (15)0.0651 (17)0.0541 (16)0.0074 (12)0.0249 (13)−0.0058 (13)
C220.0365 (14)0.075 (2)0.0681 (19)0.0054 (13)0.0194 (13)0.0037 (15)
C230.0399 (14)0.0640 (18)0.0464 (14)−0.0067 (12)0.0082 (11)0.0046 (13)
C240.0448 (14)0.0463 (14)0.0377 (12)−0.0075 (11)0.0151 (11)−0.0042 (10)
Zn—O12.5300 (15)C7—H70.9300
Zn—O22.0045 (14)C8—C91.486 (3)
Zn—O42.0607 (14)C9—C101.383 (3)
Zn—O72.1375 (15)C9—C141.396 (3)
Zn—N12.0986 (18)C10—C111.377 (3)
Zn—N22.1275 (17)C10—H100.9300
N1—C151.343 (3)C11—C121.384 (3)
N1—C191.344 (3)C11—H110.9300
N2—C241.337 (3)C12—C131.386 (3)
N2—C201.344 (3)C13—C141.379 (3)
O1—C11.246 (2)C13—H130.9300
O2—C11.264 (2)C14—H140.9300
O3—C51.364 (2)C15—C161.369 (3)
O3—H3A0.9362C15—H150.9300
O4—C81.295 (2)C16—C171.375 (4)
O5—C81.239 (2)C16—H160.9300
O6—C121.355 (2)C17—C181.371 (4)
O6—H6A0.8744C17—H170.9300
O7—H7A0.8971C18—C191.384 (3)
O7—H7B0.9465C18—H180.9300
C1—C21.494 (3)C19—C201.487 (3)
C2—C31.384 (3)C20—C211.376 (3)
C2—C71.390 (3)C21—C221.386 (4)
C3—C41.377 (3)C21—H210.9300
C3—H30.9300C22—C231.364 (4)
C4—C51.386 (3)C22—H220.9300
C4—H40.9300C23—C241.373 (3)
C5—C61.386 (3)C23—H230.9300
C6—C71.380 (3)C24—H240.9300
C6—H60.9300
O1—Zn—O256.03 (5)O5—C8—C9120.47 (18)
O1—Zn—O4152.01 (5)O4—C8—C9116.13 (18)
O1—Zn—O781.49 (6)C10—C9—C14118.02 (19)
O1—Zn—N193.94 (6)C10—C9—C8120.87 (18)
O1—Zn—N2105.73 (6)C14—C9—C8121.11 (19)
O2—Zn—O498.60 (6)C11—C10—C9121.4 (2)
O2—Zn—O791.23 (6)C11—C10—H10119.3
O2—Zn—N1147.97 (7)C9—C10—H10119.3
O2—Zn—N298.85 (6)C10—C11—C12120.2 (2)
O4—Zn—O788.12 (6)C10—C11—H11119.9
O4—Zn—N1112.93 (6)C12—C11—H11119.9
O4—Zn—N288.48 (6)O6—C12—C11116.7 (2)
N1—Zn—O795.19 (7)O6—C12—C13123.98 (19)
N1—Zn—N277.25 (7)C11—C12—C13119.3 (2)
N2—Zn—O7169.74 (6)C14—C13—C12120.1 (2)
Zn—O1—C179.34 (12)C14—C13—H13119.9
Zn—O2—C1103.38 (13)C12—C13—H13119.9
Zn—O4—C8130.04 (13)C13—C14—C9121.0 (2)
C15—N1—C19118.2 (2)C13—C14—H14119.5
C15—N1—Zn125.83 (16)C9—C14—H14119.5
C19—N1—Zn115.97 (14)N1—C15—C16122.9 (2)
C24—N2—C20118.50 (19)N1—C15—H15118.6
C24—N2—Zn125.52 (15)C16—C15—H15118.6
C20—N2—Zn114.88 (14)C15—C16—C17118.8 (2)
C5—O3—H3A117.6C15—C16—H16120.6
C12—O6—H6A109.7C17—C16—H16120.6
Zn—O7—H7A119.6C18—C17—C16119.0 (2)
Zn—O7—H7B93.5C18—C17—H17120.5
H7A—O7—H7B104.0C16—C17—H17120.5
O1—C1—O2120.60 (19)C17—C18—C19119.6 (2)
O1—C1—C2121.04 (19)C17—C18—H18120.2
O2—C1—C2118.36 (18)C19—C18—H18120.2
C3—C2—C7118.38 (18)N1—C19—C18121.4 (2)
C3—C2—C1121.02 (18)N1—C19—C20115.53 (19)
C7—C2—C1120.54 (18)C18—C19—C20123.0 (2)
C4—C3—C2121.16 (19)N2—C20—C21121.4 (2)
C4—C3—H3119.4N2—C20—C19115.06 (19)
C2—C3—H3119.4C21—C20—C19123.5 (2)
C3—C4—C5119.73 (19)C20—C21—C22119.0 (2)
C3—C4—H4120.1C20—C21—H21120.5
C5—C4—H4120.1C22—C21—H21120.5
O3—C5—C4117.50 (18)C23—C22—C21119.8 (2)
O3—C5—C6122.40 (19)C23—C22—H22120.1
C4—C5—C6120.10 (19)C21—C22—H22120.1
C7—C6—C5119.36 (19)C22—C23—C24118.1 (2)
C7—C6—H6120.3C22—C23—H23120.9
C5—C6—H6120.3C24—C23—H23120.9
C6—C7—C2121.23 (19)N2—C24—C23123.2 (2)
C6—C7—H7119.4N2—C24—H24118.4
C2—C7—H7119.4C23—C24—H24118.4
O5—C8—O4123.39 (19)
D—H···AD—HH···AD···AD—H···A
O3—H3A···O1i0.941.642.565 (2)169
O6—H6A···O4ii0.871.812.668 (2)168
O7—H7A···O3iii0.901.932.813 (2)168
O7—H7B···O50.951.732.636 (2)158
Table 1

Selected bond lengths (Å)

Zn—O12.5300 (15)
Zn—O22.0045 (14)
Zn—O42.0607 (14)
Zn—O72.1375 (15)
Zn—N12.0986 (18)
Zn—N22.1275 (17)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3A⋯O1i0.941.642.565 (2)169
O6—H6A⋯O4ii0.871.812.668 (2)168
O7—H7A⋯O3iii0.901.932.813 (2)168
O7—H7B⋯O50.951.732.636 (2)158

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  catena-Poly[[bis(1H-benzimidazole-kappaN3)(salicylato-kappaO)copper(II)]-mu-salicylato-O,O':O''].

Authors:  Hong Li; Kai-Liang Yin; Duan-Jun Xu
Journal:  Acta Crystallogr C       Date:  2004-12-11       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Diaquabis(2,5-dihydroxybenzoato-kappaO)bis(1,10-phenanthroline-kappa2N,N')strontium(II) bis(1,10-phenanthroline) tetrahydrate.

Authors:  Duan Jun Xu; Qian Yang; Li Jie Ma; Jing Jing Nie
Journal:  Acta Crystallogr C       Date:  2007-10-13       Impact factor: 1.172

4.  Aqua(4-hydroxy-benzoato-κO)(4-hydroxy-benzoato-κO,O')(1,10-phenanthroline-κN,N')zinc(II) monohydrate.

Authors:  Li-Li Kong; Shan Gao; Li-Hua Huo; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-25

5.  Intramolecular pi-pi stacking in diaquabis(2-hydroxybenzoato-kappaO)bis(1,10-phenanthroline-kappa2N,N')strontium(II).

Authors:  Duan-Jun Xu; Bing-Yu Zhang; Jian-Rong Su; Jing-Jing Nie
Journal:  Acta Crystallogr C       Date:  2007-11-30       Impact factor: 1.172

  5 in total
  2 in total

1.  Dibenzoato-κO;κO,O'-(6,6'-dimethyl-2,2'-bipyridine-κN,N')zinc(II)-benzoic acid (1/1).

Authors:  Li Yao; Wen-Juan Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-23

2.  (2,2'-Bipyridine-κN,N')bis-(4-chloro-benzoato-κO)zinc.

Authors:  Bi-Song Zhang; Hong-Line Zhu; Jun Li; Dong-Dong Dai; Yi-Bao Peng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-24
  2 in total

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