| Literature DB >> 21583337 |
Li Zhang1.
Abstract
The title compound, [Zn(2)(C(6)H(4)N(5))(2)(H(2)O)(6)](CF(3)CO(2))(2)·H(2)O, was synthesized by hydro-thermal reaction of ZnBr(2), CF(3)COOH and 2-(2H-tetra-zol-5-yl)pyridine. The Zn(II) cation is coordinated by one N atom from the 5-(2-pyrid-yl)tetra-zolate anion, two N atoms from another 5-(2-pyrid-yl)tetra-zolate anion and three O atoms from three water mol-ecules in a distorted octa-hedral geometry. The tetra-zole ligands bridge the metal ions of the dimeric structure, and the dimers are located on crystallographic inversion centers. An inter-stitial solvent water mol-ecule is located on a crystallographic mirror plane, and the CF(3)COO(-) counter-anions are also not coordinated to the metal complex. The F atoms of the anions are disordered with the F atoms statistically distributed over two positions in a 0.56 (3)/0.44 (3) ratio. All the water H atoms are involved in O-H⋯N and O-H⋯O hydrogen bonds with uncoordinated water O atoms, carboxyl-ate O atoms and tetra-zole N atoms. The inter-actions link the mol-ecules into a three-dimensional network.Entities:
Year: 2009 PMID: 21583337 PMCID: PMC2977136 DOI: 10.1107/S1600536809025112
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Zn2(C6H4N5)2(H2O)6](C2F3O2)2·H2O | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2n 2ab | Cell parameters from 2470 reflections |
| θ = 3.3–27.5° | |
| µ = 1.83 mm−1 | |
| Block, colorless | |
| 0.13 × 0.10 × 0.10 mm |
| Rigaku Mercury2 diffractometer | 3197 independent reflections |
| Radiation source: fine-focus sealed tube | 2470 reflections with |
| graphite | |
| Detector resolution: 13.6612 pixels mm-1 | θmax = 27.5°, θmin = 3.3° |
| CCD profile fitting scans | |
| Absorption correction: multi-scan ( | |
| 27226 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3197 reflections | (Δ/σ)max < 0.001 |
| 253 parameters | Δρmax = 0.35 e Å−3 |
| 251 restraints | Δρmin = −0.49 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Occ. (<1) | |||||
| Zn1 | 0.56081 (3) | 0.12025 (2) | 0.447600 (15) | 0.02154 (11) | |
| N1 | 0.7732 (3) | 0.12660 (15) | 0.40077 (12) | 0.0269 (5) | |
| N5 | 0.6601 (2) | −0.00968 (15) | 0.47213 (11) | 0.0227 (5) | |
| C1 | 0.8615 (3) | 0.05501 (18) | 0.41119 (13) | 0.0242 (6) | |
| C3 | 1.0585 (4) | 0.1271 (2) | 0.35717 (17) | 0.0431 (8) | |
| H3 | 1.1547 | 0.1278 | 0.3430 | 0.052* | |
| C2 | 1.0043 (3) | 0.0530 (2) | 0.39017 (15) | 0.0328 (7) | |
| H2 | 1.0628 | 0.0026 | 0.3981 | 0.039* | |
| C4 | 0.9684 (4) | 0.1997 (2) | 0.34563 (17) | 0.0439 (9) | |
| H4 | 1.0023 | 0.2500 | 0.3228 | 0.053* | |
| C5 | 0.8276 (4) | 0.1973 (2) | 0.36817 (16) | 0.0359 (7) | |
| H5 | 0.7675 | 0.2470 | 0.3604 | 0.043* | |
| N2 | 0.8487 (3) | −0.10045 (16) | 0.46066 (12) | 0.0308 (6) | |
| C6 | 0.7937 (3) | −0.01880 (18) | 0.44738 (13) | 0.0232 (6) | |
| N3 | 0.7445 (3) | −0.14277 (16) | 0.49503 (13) | 0.0306 (6) | |
| N4 | 0.6325 (2) | −0.08873 (15) | 0.50152 (11) | 0.0234 (5) | |
| O1W | 0.5000 | 0.1758 (2) | 0.2500 | 0.0401 (8) | |
| H1W | 0.563 (3) | 0.212 (2) | 0.241 (2) | 0.060* | |
| O4 | 0.3097 (2) | 0.29375 (15) | 0.31366 (11) | 0.0390 (5) | |
| O5 | 0.1974 (3) | 0.41373 (15) | 0.35629 (11) | 0.0439 (6) | |
| C7 | 0.2553 (3) | 0.3704 (2) | 0.31174 (15) | 0.0285 (6) | |
| O1 | 0.4894 (3) | 0.24792 (13) | 0.41823 (11) | 0.0339 (5) | |
| H1WA | 0.428 (3) | 0.260 (2) | 0.3893 (14) | 0.051* | |
| H1WB | 0.522 (4) | 0.2972 (16) | 0.4296 (18) | 0.051* | |
| O2 | 0.6523 (3) | 0.18073 (14) | 0.52952 (11) | 0.0394 (6) | |
| H2WA | 0.670 (4) | 0.151 (2) | 0.5621 (13) | 0.059* | |
| H2WB | 0.697 (4) | 0.2292 (18) | 0.5291 (19) | 0.059* | |
| O3 | 0.4655 (3) | 0.07205 (15) | 0.36187 (11) | 0.0382 (6) | |
| H3WA | 0.420 (4) | 0.0246 (17) | 0.3576 (18) | 0.057* | |
| H3WB | 0.490 (4) | 0.089 (2) | 0.3263 (12) | 0.057* | |
| C8 | 0.2574 (4) | 0.4177 (2) | 0.24534 (16) | 0.0383 (8) | |
| F1 | 0.3505 (12) | 0.3818 (7) | 0.2048 (5) | 0.067 (2) | 0.56 (3) |
| F2 | 0.286 (2) | 0.5036 (5) | 0.2486 (8) | 0.099 (4) | 0.56 (3) |
| F3 | 0.1294 (9) | 0.4106 (11) | 0.2175 (6) | 0.101 (4) | 0.56 (3) |
| F1' | 0.3771 (14) | 0.4040 (15) | 0.2124 (8) | 0.114 (5) | 0.44 (3) |
| F2' | 0.241 (2) | 0.5056 (6) | 0.2495 (9) | 0.081 (4) | 0.44 (3) |
| F3' | 0.1517 (15) | 0.3909 (10) | 0.2077 (8) | 0.081 (4) | 0.44 (3) |
| Zn1 | 0.02240 (17) | 0.01646 (16) | 0.02576 (18) | −0.00013 (13) | 0.00141 (14) | 0.00342 (13) |
| N1 | 0.0262 (12) | 0.0216 (12) | 0.0329 (13) | −0.0012 (10) | 0.0054 (10) | 0.0065 (10) |
| N5 | 0.0239 (12) | 0.0162 (11) | 0.0281 (12) | 0.0025 (9) | 0.0040 (10) | 0.0033 (9) |
| C1 | 0.0240 (15) | 0.0228 (14) | 0.0258 (15) | −0.0029 (12) | 0.0039 (12) | −0.0014 (11) |
| C3 | 0.0308 (17) | 0.046 (2) | 0.052 (2) | −0.0089 (16) | 0.0140 (16) | −0.0024 (16) |
| C2 | 0.0266 (15) | 0.0314 (16) | 0.0406 (19) | 0.0002 (14) | 0.0058 (14) | −0.0002 (14) |
| C4 | 0.041 (2) | 0.0367 (18) | 0.054 (2) | −0.0119 (15) | 0.0144 (17) | 0.0106 (16) |
| C5 | 0.0365 (17) | 0.0273 (16) | 0.0438 (19) | −0.0011 (14) | 0.0071 (15) | 0.0111 (14) |
| N2 | 0.0278 (13) | 0.0239 (13) | 0.0406 (15) | 0.0073 (10) | 0.0087 (11) | 0.0063 (10) |
| C6 | 0.0227 (14) | 0.0217 (13) | 0.0251 (14) | 0.0026 (11) | 0.0024 (12) | −0.0013 (11) |
| N3 | 0.0323 (14) | 0.0203 (12) | 0.0394 (15) | 0.0073 (11) | 0.0085 (12) | 0.0063 (11) |
| N4 | 0.0236 (12) | 0.0166 (11) | 0.0301 (13) | 0.0023 (10) | 0.0024 (10) | 0.0026 (9) |
| O1W | 0.054 (2) | 0.0308 (18) | 0.0356 (19) | 0.000 | 0.0115 (17) | 0.000 |
| O4 | 0.0455 (14) | 0.0298 (11) | 0.0418 (13) | 0.0104 (10) | 0.0031 (11) | 0.0040 (10) |
| O5 | 0.0642 (16) | 0.0362 (12) | 0.0314 (12) | 0.0172 (12) | 0.0148 (11) | 0.0070 (10) |
| C7 | 0.0260 (15) | 0.0286 (16) | 0.0311 (15) | −0.0017 (12) | −0.0020 (13) | 0.0027 (13) |
| O1 | 0.0426 (13) | 0.0163 (10) | 0.0428 (14) | −0.0028 (10) | −0.0170 (11) | 0.0042 (9) |
| O2 | 0.0622 (16) | 0.0264 (12) | 0.0296 (12) | −0.0194 (11) | −0.0146 (12) | 0.0060 (9) |
| O3 | 0.0556 (16) | 0.0317 (12) | 0.0272 (12) | −0.0181 (11) | −0.0036 (11) | −0.0010 (10) |
| C8 | 0.046 (2) | 0.0387 (18) | 0.0302 (18) | 0.0042 (16) | 0.0016 (15) | 0.0037 (15) |
| F1 | 0.114 (6) | 0.055 (4) | 0.032 (3) | 0.011 (3) | 0.026 (3) | −0.003 (3) |
| F2 | 0.204 (11) | 0.037 (4) | 0.055 (6) | −0.035 (5) | 0.039 (6) | 0.006 (4) |
| F3 | 0.061 (4) | 0.169 (10) | 0.073 (6) | 0.012 (5) | −0.030 (3) | 0.057 (6) |
| F1' | 0.072 (6) | 0.177 (13) | 0.093 (10) | 0.055 (7) | 0.056 (6) | 0.088 (8) |
| F2' | 0.175 (11) | 0.033 (4) | 0.035 (6) | 0.015 (5) | −0.010 (7) | 0.011 (4) |
| F3' | 0.129 (8) | 0.066 (5) | 0.048 (5) | −0.017 (6) | −0.038 (6) | −0.018 (4) |
| Zn1—O1 | 2.081 (2) | N2—N3 | 1.344 (3) |
| Zn1—O2 | 2.088 (2) | N3—N4 | 1.307 (3) |
| Zn1—O3 | 2.098 (2) | N4—Zn1i | 2.113 (2) |
| Zn1—N4i | 2.113 (2) | O1W—H1W | 0.809 (18) |
| Zn1—N1 | 2.177 (2) | O4—C7 | 1.235 (3) |
| Zn1—N5 | 2.179 (2) | O5—C7 | 1.239 (4) |
| N1—C5 | 1.336 (4) | C7—C8 | 1.538 (4) |
| N1—C1 | 1.347 (3) | O1—H1WA | 0.842 (18) |
| N5—C6 | 1.335 (3) | O1—H1WB | 0.818 (18) |
| N5—N4 | 1.337 (3) | O2—H2WA | 0.815 (18) |
| C1—C2 | 1.380 (4) | O2—H2WB | 0.825 (18) |
| C1—C6 | 1.459 (4) | O3—H3WA | 0.818 (18) |
| C3—C4 | 1.373 (5) | O3—H3WB | 0.809 (18) |
| C3—C2 | 1.379 (4) | C8—F2 | 1.294 (8) |
| C3—H3 | 0.9300 | C8—F3' | 1.304 (9) |
| C2—H2 | 0.9300 | C8—F2' | 1.306 (9) |
| C4—C5 | 1.374 (4) | C8—F1' | 1.307 (9) |
| C4—H4 | 0.9300 | C8—F1 | 1.308 (7) |
| C5—H5 | 0.9300 | C8—F3 | 1.312 (7) |
| N2—C6 | 1.332 (4) | ||
| O1—Zn1—O2 | 88.72 (9) | N2—C6—N5 | 111.1 (2) |
| O1—Zn1—O3 | 85.89 (9) | N2—C6—C1 | 128.0 (2) |
| O2—Zn1—O3 | 174.52 (9) | N5—C6—C1 | 120.9 (2) |
| O1—Zn1—N4i | 94.53 (9) | N4—N3—N2 | 109.4 (2) |
| O2—Zn1—N4i | 91.59 (9) | N3—N4—N5 | 109.5 (2) |
| O3—Zn1—N4i | 89.76 (9) | N3—N4—Zn1i | 125.28 (17) |
| O1—Zn1—N1 | 96.52 (9) | N5—N4—Zn1i | 125.18 (17) |
| O2—Zn1—N1 | 88.98 (10) | O4—C7—O5 | 128.3 (3) |
| O3—Zn1—N1 | 90.71 (10) | O4—C7—C8 | 115.9 (3) |
| N4i—Zn1—N1 | 168.94 (9) | O5—C7—C8 | 115.8 (3) |
| O1—Zn1—N5 | 173.03 (9) | Zn1—O1—H1WA | 128 (3) |
| O2—Zn1—N5 | 91.03 (9) | Zn1—O1—H1WB | 127 (3) |
| O3—Zn1—N5 | 94.22 (9) | H1WA—O1—H1WB | 105 (4) |
| N4i—Zn1—N5 | 92.44 (8) | Zn1—O2—H2WA | 121 (3) |
| N1—Zn1—N5 | 76.51 (8) | Zn1—O2—H2WB | 124 (3) |
| C5—N1—C1 | 117.7 (2) | H2WA—O2—H2WB | 112 (4) |
| C5—N1—Zn1 | 126.3 (2) | Zn1—O3—H3WA | 126 (3) |
| C1—N1—Zn1 | 115.72 (17) | Zn1—O3—H3WB | 123 (3) |
| C6—N5—N4 | 105.1 (2) | H3WA—O3—H3WB | 108 (4) |
| C6—N5—Zn1 | 112.54 (17) | F2—C8—F3' | 118.4 (11) |
| N4—N5—Zn1 | 142.25 (17) | F3'—C8—F2' | 104.6 (8) |
| N1—C1—C2 | 122.5 (3) | F2—C8—F1' | 90.5 (13) |
| N1—C1—C6 | 114.1 (2) | F3'—C8—F1' | 105.5 (8) |
| C2—C1—C6 | 123.4 (3) | F2'—C8—F1' | 106.5 (9) |
| C4—C3—C2 | 119.0 (3) | F2—C8—F1 | 107.3 (8) |
| C4—C3—H3 | 120.5 | F3'—C8—F1 | 88.9 (9) |
| C2—C3—H3 | 120.5 | F2'—C8—F1 | 121.2 (12) |
| C3—C2—C1 | 118.7 (3) | F2—C8—F3 | 106.3 (8) |
| C3—C2—H2 | 120.6 | F2'—C8—F3 | 90.2 (11) |
| C1—C2—H2 | 120.6 | F1'—C8—F3 | 120.8 (10) |
| C3—C4—C5 | 119.1 (3) | F1—C8—F3 | 105.8 (6) |
| C3—C4—H4 | 120.4 | F2—C8—C7 | 113.5 (8) |
| C5—C4—H4 | 120.4 | F3'—C8—C7 | 112.7 (9) |
| N1—C5—C4 | 122.8 (3) | F2'—C8—C7 | 112.8 (8) |
| N1—C5—H5 | 118.6 | F1'—C8—C7 | 113.9 (8) |
| C4—C5—H5 | 118.6 | F1—C8—C7 | 113.4 (6) |
| C6—N2—N3 | 104.9 (2) | F3—C8—C7 | 110.1 (6) |
| H··· | ||||
| O3—H3WB···O1W | 0.81 (2) | 2.03 (2) | 2.788 (3) | 156 (4) |
| O1—H1WA···O4 | 0.84 (2) | 1.97 (2) | 2.800 (3) | 171 (4) |
| O3—H3WA···O5ii | 0.82 (2) | 1.96 (2) | 2.771 (3) | 174 (4) |
| O2—H2WB···N3iii | 0.83 (2) | 2.08 (2) | 2.856 (3) | 156 (4) |
| O2—H2WA···O5iv | 0.82 (2) | 1.96 (2) | 2.769 (3) | 175 (4) |
| O1—H1WB···N2iii | 0.82 (2) | 2.02 (2) | 2.821 (3) | 165 (4) |
| O1W—H1W···O4v | 0.81 (2) | 2.02 (2) | 2.791 (3) | 158 (4) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O3—H3 | 0.809 (18) | 2.03 (2) | 2.788 (3) | 156 (4) |
| O1—H1 | 0.842 (18) | 1.965 (19) | 2.800 (3) | 171 (4) |
| O3—H3 | 0.818 (18) | 1.956 (19) | 2.771 (3) | 174 (4) |
| O2—H2 | 0.825 (18) | 2.08 (2) | 2.856 (3) | 156 (4) |
| O2—H2 | 0.815 (18) | 1.956 (19) | 2.769 (3) | 175 (4) |
| O1—H1 | 0.818 (18) | 2.02 (2) | 2.821 (3) | 165 (4) |
| O1 | 0.809 (18) | 2.02 (2) | 2.791 (3) | 158 (4) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .