Literature DB >> 21583337

Bis[μ-5-(2-pyrid-yl)tetra-zolato]-κN,N:N;κN:N,N-bis-[triaqua-zinc(II)] bis-(trifluoro-acetate) monohydrate.

Li Zhang1.   

Abstract

The title compound, [Zn(2)(C(6)H(4)N(5))(2)(H(2)O)(6)](CF(3)CO(2))(2)·H(2)O, was synthesized by hydro-thermal reaction of ZnBr(2), CF(3)COOH and 2-(2H-tetra-zol-5-yl)pyridine. The Zn(II) cation is coordinated by one N atom from the 5-(2-pyrid-yl)tetra-zolate anion, two N atoms from another 5-(2-pyrid-yl)tetra-zolate anion and three O atoms from three water mol-ecules in a distorted octa-hedral geometry. The tetra-zole ligands bridge the metal ions of the dimeric structure, and the dimers are located on crystallographic inversion centers. An inter-stitial solvent water mol-ecule is located on a crystallographic mirror plane, and the CF(3)COO(-) counter-anions are also not coordinated to the metal complex. The F atoms of the anions are disordered with the F atoms statistically distributed over two positions in a 0.56 (3)/0.44 (3) ratio. All the water H atoms are involved in O-H⋯N and O-H⋯O hydrogen bonds with uncoordinated water O atoms, carboxyl-ate O atoms and tetra-zole N atoms. The inter-actions link the mol-ecules into a three-dimensional network.

Entities:  

Year:  2009        PMID: 21583337      PMCID: PMC2977136          DOI: 10.1107/S1600536809025112

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to metal-organic coordination compounds, see: Fu et al. (2007 ▶); Georgiev & MacGillivray (2007 ▶). For the crystal structures of related compounds, see: Zhao et al. (2008 ▶); Fu et al. (2008 ▶).

Experimental

Crystal data

[Zn2(C6H4N5)2(H2O)6](C2F3O2)2·H2O M = 775.18 Orthorhombic, a = 9.1750 (18) Å b = 14.722 (3) Å c = 20.657 (4) Å V = 2790.3 (10) Å3 Z = 4 Mo Kα radiation μ = 1.83 mm−1 T = 298 K 0.13 × 0.10 × 0.10 mm

Data collection

Rigaku Mercury2 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.708, T max = 0.833 27226 measured reflections 3197 independent reflections 2470 reflections with I > 2σ(I) R int = 0.074

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.089 S = 1.12 3197 reflections 253 parameters 251 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.35 e Å−3 Δρmin = −0.49 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809025112/zl2226sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809025112/zl2226Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn2(C6H4N5)2(H2O)6](C2F3O2)2·H2OF(000) = 1560
Mr = 775.18Dx = 1.845 Mg m3
Orthorhombic, PbcnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2n 2abCell parameters from 2470 reflections
a = 9.1750 (18) Åθ = 3.3–27.5°
b = 14.722 (3) ŵ = 1.83 mm1
c = 20.657 (4) ÅT = 298 K
V = 2790.3 (10) Å3Block, colorless
Z = 40.13 × 0.10 × 0.10 mm
Rigaku Mercury2 diffractometer3197 independent reflections
Radiation source: fine-focus sealed tube2470 reflections with I > 2σ(I)
graphiteRint = 0.074
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 3.3°
CCD profile fitting scansh = −11→11
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −18→19
Tmin = 0.708, Tmax = 0.833l = −26→26
27226 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.089H atoms treated by a mixture of independent and constrained refinement
S = 1.12w = 1/[σ2(Fo2) + (0.0331P)2 + 2.0898P] where P = (Fo2 + 2Fc2)/3
3197 reflections(Δ/σ)max < 0.001
253 parametersΔρmax = 0.35 e Å3
251 restraintsΔρmin = −0.49 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Zn10.56081 (3)0.12025 (2)0.447600 (15)0.02154 (11)
N10.7732 (3)0.12660 (15)0.40077 (12)0.0269 (5)
N50.6601 (2)−0.00968 (15)0.47213 (11)0.0227 (5)
C10.8615 (3)0.05501 (18)0.41119 (13)0.0242 (6)
C31.0585 (4)0.1271 (2)0.35717 (17)0.0431 (8)
H31.15470.12780.34300.052*
C21.0043 (3)0.0530 (2)0.39017 (15)0.0328 (7)
H21.06280.00260.39810.039*
C40.9684 (4)0.1997 (2)0.34563 (17)0.0439 (9)
H41.00230.25000.32280.053*
C50.8276 (4)0.1973 (2)0.36817 (16)0.0359 (7)
H50.76750.24700.36040.043*
N20.8487 (3)−0.10045 (16)0.46066 (12)0.0308 (6)
C60.7937 (3)−0.01880 (18)0.44738 (13)0.0232 (6)
N30.7445 (3)−0.14277 (16)0.49503 (13)0.0306 (6)
N40.6325 (2)−0.08873 (15)0.50152 (11)0.0234 (5)
O1W0.50000.1758 (2)0.25000.0401 (8)
H1W0.563 (3)0.212 (2)0.241 (2)0.060*
O40.3097 (2)0.29375 (15)0.31366 (11)0.0390 (5)
O50.1974 (3)0.41373 (15)0.35629 (11)0.0439 (6)
C70.2553 (3)0.3704 (2)0.31174 (15)0.0285 (6)
O10.4894 (3)0.24792 (13)0.41823 (11)0.0339 (5)
H1WA0.428 (3)0.260 (2)0.3893 (14)0.051*
H1WB0.522 (4)0.2972 (16)0.4296 (18)0.051*
O20.6523 (3)0.18073 (14)0.52952 (11)0.0394 (6)
H2WA0.670 (4)0.151 (2)0.5621 (13)0.059*
H2WB0.697 (4)0.2292 (18)0.5291 (19)0.059*
O30.4655 (3)0.07205 (15)0.36187 (11)0.0382 (6)
H3WA0.420 (4)0.0246 (17)0.3576 (18)0.057*
H3WB0.490 (4)0.089 (2)0.3263 (12)0.057*
C80.2574 (4)0.4177 (2)0.24534 (16)0.0383 (8)
F10.3505 (12)0.3818 (7)0.2048 (5)0.067 (2)0.56 (3)
F20.286 (2)0.5036 (5)0.2486 (8)0.099 (4)0.56 (3)
F30.1294 (9)0.4106 (11)0.2175 (6)0.101 (4)0.56 (3)
F1'0.3771 (14)0.4040 (15)0.2124 (8)0.114 (5)0.44 (3)
F2'0.241 (2)0.5056 (6)0.2495 (9)0.081 (4)0.44 (3)
F3'0.1517 (15)0.3909 (10)0.2077 (8)0.081 (4)0.44 (3)
U11U22U33U12U13U23
Zn10.02240 (17)0.01646 (16)0.02576 (18)−0.00013 (13)0.00141 (14)0.00342 (13)
N10.0262 (12)0.0216 (12)0.0329 (13)−0.0012 (10)0.0054 (10)0.0065 (10)
N50.0239 (12)0.0162 (11)0.0281 (12)0.0025 (9)0.0040 (10)0.0033 (9)
C10.0240 (15)0.0228 (14)0.0258 (15)−0.0029 (12)0.0039 (12)−0.0014 (11)
C30.0308 (17)0.046 (2)0.052 (2)−0.0089 (16)0.0140 (16)−0.0024 (16)
C20.0266 (15)0.0314 (16)0.0406 (19)0.0002 (14)0.0058 (14)−0.0002 (14)
C40.041 (2)0.0367 (18)0.054 (2)−0.0119 (15)0.0144 (17)0.0106 (16)
C50.0365 (17)0.0273 (16)0.0438 (19)−0.0011 (14)0.0071 (15)0.0111 (14)
N20.0278 (13)0.0239 (13)0.0406 (15)0.0073 (10)0.0087 (11)0.0063 (10)
C60.0227 (14)0.0217 (13)0.0251 (14)0.0026 (11)0.0024 (12)−0.0013 (11)
N30.0323 (14)0.0203 (12)0.0394 (15)0.0073 (11)0.0085 (12)0.0063 (11)
N40.0236 (12)0.0166 (11)0.0301 (13)0.0023 (10)0.0024 (10)0.0026 (9)
O1W0.054 (2)0.0308 (18)0.0356 (19)0.0000.0115 (17)0.000
O40.0455 (14)0.0298 (11)0.0418 (13)0.0104 (10)0.0031 (11)0.0040 (10)
O50.0642 (16)0.0362 (12)0.0314 (12)0.0172 (12)0.0148 (11)0.0070 (10)
C70.0260 (15)0.0286 (16)0.0311 (15)−0.0017 (12)−0.0020 (13)0.0027 (13)
O10.0426 (13)0.0163 (10)0.0428 (14)−0.0028 (10)−0.0170 (11)0.0042 (9)
O20.0622 (16)0.0264 (12)0.0296 (12)−0.0194 (11)−0.0146 (12)0.0060 (9)
O30.0556 (16)0.0317 (12)0.0272 (12)−0.0181 (11)−0.0036 (11)−0.0010 (10)
C80.046 (2)0.0387 (18)0.0302 (18)0.0042 (16)0.0016 (15)0.0037 (15)
F10.114 (6)0.055 (4)0.032 (3)0.011 (3)0.026 (3)−0.003 (3)
F20.204 (11)0.037 (4)0.055 (6)−0.035 (5)0.039 (6)0.006 (4)
F30.061 (4)0.169 (10)0.073 (6)0.012 (5)−0.030 (3)0.057 (6)
F1'0.072 (6)0.177 (13)0.093 (10)0.055 (7)0.056 (6)0.088 (8)
F2'0.175 (11)0.033 (4)0.035 (6)0.015 (5)−0.010 (7)0.011 (4)
F3'0.129 (8)0.066 (5)0.048 (5)−0.017 (6)−0.038 (6)−0.018 (4)
Zn1—O12.081 (2)N2—N31.344 (3)
Zn1—O22.088 (2)N3—N41.307 (3)
Zn1—O32.098 (2)N4—Zn1i2.113 (2)
Zn1—N4i2.113 (2)O1W—H1W0.809 (18)
Zn1—N12.177 (2)O4—C71.235 (3)
Zn1—N52.179 (2)O5—C71.239 (4)
N1—C51.336 (4)C7—C81.538 (4)
N1—C11.347 (3)O1—H1WA0.842 (18)
N5—C61.335 (3)O1—H1WB0.818 (18)
N5—N41.337 (3)O2—H2WA0.815 (18)
C1—C21.380 (4)O2—H2WB0.825 (18)
C1—C61.459 (4)O3—H3WA0.818 (18)
C3—C41.373 (5)O3—H3WB0.809 (18)
C3—C21.379 (4)C8—F21.294 (8)
C3—H30.9300C8—F3'1.304 (9)
C2—H20.9300C8—F2'1.306 (9)
C4—C51.374 (4)C8—F1'1.307 (9)
C4—H40.9300C8—F11.308 (7)
C5—H50.9300C8—F31.312 (7)
N2—C61.332 (4)
O1—Zn1—O288.72 (9)N2—C6—N5111.1 (2)
O1—Zn1—O385.89 (9)N2—C6—C1128.0 (2)
O2—Zn1—O3174.52 (9)N5—C6—C1120.9 (2)
O1—Zn1—N4i94.53 (9)N4—N3—N2109.4 (2)
O2—Zn1—N4i91.59 (9)N3—N4—N5109.5 (2)
O3—Zn1—N4i89.76 (9)N3—N4—Zn1i125.28 (17)
O1—Zn1—N196.52 (9)N5—N4—Zn1i125.18 (17)
O2—Zn1—N188.98 (10)O4—C7—O5128.3 (3)
O3—Zn1—N190.71 (10)O4—C7—C8115.9 (3)
N4i—Zn1—N1168.94 (9)O5—C7—C8115.8 (3)
O1—Zn1—N5173.03 (9)Zn1—O1—H1WA128 (3)
O2—Zn1—N591.03 (9)Zn1—O1—H1WB127 (3)
O3—Zn1—N594.22 (9)H1WA—O1—H1WB105 (4)
N4i—Zn1—N592.44 (8)Zn1—O2—H2WA121 (3)
N1—Zn1—N576.51 (8)Zn1—O2—H2WB124 (3)
C5—N1—C1117.7 (2)H2WA—O2—H2WB112 (4)
C5—N1—Zn1126.3 (2)Zn1—O3—H3WA126 (3)
C1—N1—Zn1115.72 (17)Zn1—O3—H3WB123 (3)
C6—N5—N4105.1 (2)H3WA—O3—H3WB108 (4)
C6—N5—Zn1112.54 (17)F2—C8—F3'118.4 (11)
N4—N5—Zn1142.25 (17)F3'—C8—F2'104.6 (8)
N1—C1—C2122.5 (3)F2—C8—F1'90.5 (13)
N1—C1—C6114.1 (2)F3'—C8—F1'105.5 (8)
C2—C1—C6123.4 (3)F2'—C8—F1'106.5 (9)
C4—C3—C2119.0 (3)F2—C8—F1107.3 (8)
C4—C3—H3120.5F3'—C8—F188.9 (9)
C2—C3—H3120.5F2'—C8—F1121.2 (12)
C3—C2—C1118.7 (3)F2—C8—F3106.3 (8)
C3—C2—H2120.6F2'—C8—F390.2 (11)
C1—C2—H2120.6F1'—C8—F3120.8 (10)
C3—C4—C5119.1 (3)F1—C8—F3105.8 (6)
C3—C4—H4120.4F2—C8—C7113.5 (8)
C5—C4—H4120.4F3'—C8—C7112.7 (9)
N1—C5—C4122.8 (3)F2'—C8—C7112.8 (8)
N1—C5—H5118.6F1'—C8—C7113.9 (8)
C4—C5—H5118.6F1—C8—C7113.4 (6)
C6—N2—N3104.9 (2)F3—C8—C7110.1 (6)
D—H···AD—HH···AD···AD—H···A
O3—H3WB···O1W0.81 (2)2.03 (2)2.788 (3)156 (4)
O1—H1WA···O40.84 (2)1.97 (2)2.800 (3)171 (4)
O3—H3WA···O5ii0.82 (2)1.96 (2)2.771 (3)174 (4)
O2—H2WB···N3iii0.83 (2)2.08 (2)2.856 (3)156 (4)
O2—H2WA···O5iv0.82 (2)1.96 (2)2.769 (3)175 (4)
O1—H1WB···N2iii0.82 (2)2.02 (2)2.821 (3)165 (4)
O1W—H1W···O4v0.81 (2)2.02 (2)2.791 (3)158 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3WB⋯O1W0.809 (18)2.03 (2)2.788 (3)156 (4)
O1—H1WA⋯O40.842 (18)1.965 (19)2.800 (3)171 (4)
O3—H3WA⋯O5i0.818 (18)1.956 (19)2.771 (3)174 (4)
O2—H2WB⋯N3ii0.825 (18)2.08 (2)2.856 (3)156 (4)
O2—H2WA⋯O5iii0.815 (18)1.956 (19)2.769 (3)175 (4)
O1—H1WB⋯N2ii0.818 (18)2.02 (2)2.821 (3)165 (4)
O1W—H1W⋯O4iv0.809 (18)2.02 (2)2.791 (3)158 (4)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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