Literature DB >> 21583321

2-(3-Pyridinio)benzimidazolium penta-chloridobismuthate(III) monohydrate.

Li-Jing Cui1, Hai-Jun Xu, Yi-Jie Pang.   

Abstract

In the title compound, (C(12)H(11)N(3))[BiCl(5)]·H(2)O, the Bi(III) atom is coordinated by five chloride anions in a distorted square-pyramidal geometry. The planar imidazole ring system [maximum deviation = 0.012 (3) Å] is oriented at a dihedral angle of 6.08 (5)° with respect to the protonated pyridine ring. An O-H⋯Cl inter-action links the water mol-ecule to the dianion. In the crystal structure, inter-molecular O-H⋯Cl, N-H⋯O and N-H⋯Cl inter-actions link the mol-ecules into a three-dimensional network.

Entities:  

Year:  2009        PMID: 21583321      PMCID: PMC2977254          DOI: 10.1107/S1600536809024568

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the properties of bis­muthate(III) compounds, see: Turel et al. (1998 ▶); Goforth et al. (2004 ▶).

Experimental

Crystal data

(C12H11N3)[BiCl5]·H2O M = 601.48 Monoclinic, a = 9.3297 (19) Å b = 13.391 (3) Å c = 14.476 (3) Å β = 101.78 (3)° V = 1770.6 (6) Å3 Z = 4 Mo Kα radiation μ = 10.72 mm−1 T = 294 K 0.25 × 0.20 × 0.16 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.090, T max = 0.180 17812 measured reflections 4049 independent reflections 2822 reflections with I > 2σ(I) R int = 0.115

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.116 S = 1.15 4049 reflections 199 parameters H-atom parameters constrained Δρmax = 1.28 e Å−3 Δρmin = −2.37 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809024568/hk2717sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809024568/hk2717Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C12H11N3)[BiCl5]·H2OF(000) = 1128
Mr = 601.48Dx = 2.256 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1647 reflections
a = 9.3297 (19) Åθ = 3.0–27.6°
b = 13.391 (3) ŵ = 10.72 mm1
c = 14.476 (3) ÅT = 294 K
β = 101.78 (3)°Prism, colorless
V = 1770.6 (6) Å30.25 × 0.20 × 0.16 mm
Z = 4
Rigaku SCXmini diffractometer4049 independent reflections
Radiation source: fine-focus sealed tube2822 reflections with I > 2σ(I)
graphiteRint = 0.115
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 3.0°
ω scansh = −12→12
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −17→17
Tmin = 0.090, Tmax = 0.180l = −18→18
17812 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116H-atom parameters constrained
S = 1.15w = 1/[σ2(Fo2) + (0.0236P)2] where P = (Fo2 + 2Fc2)/3
4049 reflections(Δ/σ)max < 0.001
199 parametersΔρmax = 1.28 e Å3
0 restraintsΔρmin = −2.37 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Bi10.50077 (4)0.91031 (3)0.12159 (2)0.03242 (14)
Cl10.4928 (3)0.7336 (2)0.1799 (2)0.0538 (8)
Cl20.7784 (3)0.8830 (2)0.1188 (2)0.0516 (8)
Cl30.4576 (3)0.8682 (2)−0.07062 (17)0.0432 (6)
Cl40.1991 (3)0.8994 (2)0.09655 (18)0.0461 (7)
Cl50.5648 (3)0.9799 (2)0.29758 (18)0.0474 (7)
O1W0.6526 (7)0.8372 (5)0.4766 (5)0.060 (2)
H1WA0.64700.77470.48540.072*
H1WB0.65940.82340.42040.072*
N10.1677 (8)0.8703 (6)0.6102 (6)0.041 (2)
H1A0.24660.87200.65290.049*
N2−0.0597 (8)0.8600 (6)0.5442 (5)0.0296 (18)
H2A−0.15320.85410.53710.036*
N30.0630 (10)0.8739 (7)0.8836 (6)0.046 (2)
H3B0.13050.88130.93330.055*
C10.0159 (10)0.8685 (8)0.4712 (7)0.034 (2)
C20.1627 (10)0.8756 (8)0.5147 (7)0.039 (3)
C30.2710 (12)0.8833 (10)0.4600 (8)0.066 (4)
H3A0.37000.88580.48800.079*
C40.2242 (12)0.8869 (9)0.3637 (9)0.061 (4)
H4A0.29240.89380.32530.073*
C50.0769 (12)0.8804 (8)0.3231 (7)0.049 (3)
H5A0.04940.88270.25770.058*
C6−0.0300 (11)0.8709 (8)0.3738 (7)0.041 (3)
H6A−0.12840.86620.34480.049*
C70.0345 (9)0.8625 (7)0.6271 (7)0.030 (2)
C8−0.0055 (10)0.8596 (7)0.7183 (7)0.030 (2)
C90.1021 (11)0.8701 (8)0.8005 (7)0.042 (3)
H9A0.20030.87450.79700.051*
C10−0.0742 (12)0.8670 (8)0.8940 (7)0.041 (3)
H10A−0.09560.87020.95390.050*
C11−0.1834 (11)0.8552 (8)0.8174 (7)0.041 (3)
H11A−0.28000.84910.82430.049*
C12−0.1504 (10)0.8524 (7)0.7299 (7)0.032 (2)
H12A−0.22550.84570.67710.039*
U11U22U33U12U13U23
Bi10.0332 (2)0.0371 (2)0.0254 (2)−0.00200 (18)0.00251 (15)0.00118 (18)
Cl10.0385 (15)0.0486 (19)0.068 (2)−0.0013 (13)−0.0025 (14)0.0145 (15)
Cl20.0353 (15)0.071 (2)0.0482 (18)−0.0031 (13)0.0091 (13)0.0045 (15)
Cl30.0503 (16)0.0478 (17)0.0285 (14)0.0024 (13)0.0014 (12)−0.0016 (12)
Cl40.0344 (14)0.072 (2)0.0317 (14)0.0069 (13)0.0062 (11)−0.0009 (14)
Cl50.0567 (17)0.0524 (19)0.0308 (15)−0.0069 (14)0.0031 (12)−0.0090 (13)
O1W0.057 (5)0.044 (5)0.074 (6)−0.010 (4)−0.001 (4)0.022 (4)
N10.033 (5)0.051 (6)0.034 (5)0.001 (4)−0.004 (4)0.002 (4)
N20.022 (4)0.036 (5)0.029 (5)0.005 (3)0.001 (4)−0.001 (4)
N30.050 (6)0.053 (6)0.031 (5)−0.002 (5)−0.003 (4)0.001 (4)
C10.032 (6)0.035 (6)0.033 (6)−0.001 (4)0.002 (5)0.002 (5)
C20.033 (6)0.049 (7)0.035 (6)0.001 (5)0.007 (5)−0.002 (5)
C30.031 (7)0.114 (12)0.052 (8)−0.002 (6)0.008 (6)0.020 (8)
C40.043 (7)0.097 (11)0.050 (8)0.005 (6)0.023 (6)0.020 (7)
C50.052 (7)0.070 (9)0.024 (6)0.003 (6)0.007 (5)0.009 (5)
C60.039 (6)0.047 (7)0.037 (6)−0.001 (5)0.009 (5)0.011 (5)
C70.024 (5)0.028 (6)0.037 (6)−0.001 (4)0.001 (5)−0.004 (5)
C80.043 (6)0.016 (5)0.026 (5)−0.006 (4)0.000 (4)0.000 (4)
C90.044 (6)0.048 (7)0.028 (6)−0.002 (5)−0.009 (5)−0.002 (5)
C100.063 (7)0.032 (6)0.029 (6)−0.001 (6)0.008 (5)−0.006 (5)
C110.050 (7)0.029 (7)0.045 (7)0.001 (5)0.010 (5)−0.008 (5)
C120.032 (6)0.024 (6)0.037 (6)0.000 (4)−0.001 (5)0.003 (5)
Bi1—Cl12.519 (3)C4—H4A0.9300
Bi1—Cl22.624 (3)C5—C61.359 (13)
Bi1—Cl32.787 (3)C5—H5A0.9300
Bi1—Cl42.767 (3)C6—H6A0.9300
Bi1—Cl52.664 (3)C7—N11.319 (11)
O1W—H1WA0.8500C7—N21.335 (10)
O1W—H1WB0.8500C7—C81.443 (12)
N1—H1A0.8600C8—C91.399 (12)
N2—H2A0.8600C8—C121.400 (12)
N3—H3B0.8600C9—N31.327 (12)
C1—C61.389 (13)C9—H9A0.9300
C1—C21.389 (12)C10—N31.322 (13)
C1—N21.390 (11)C10—C111.354 (13)
C2—N11.376 (12)C10—H10A0.9300
C2—C31.409 (14)C11—C121.363 (13)
C3—C41.375 (15)C11—H11A0.9300
C3—H3A0.9300C12—H12A0.9300
C4—C51.383 (14)
Cl1—Bi1—Cl288.33 (9)C2—C3—H3A121.4
Cl1—Bi1—Cl397.85 (9)C3—C4—C5120.7 (10)
Cl1—Bi1—Cl483.99 (8)C3—C4—H4A119.6
Cl1—Bi1—Cl591.41 (10)C5—C4—H4A119.6
Cl2—Bi1—Cl384.18 (9)C6—C5—C4123.5 (10)
Cl2—Bi1—Cl4166.23 (9)C6—C5—H5A118.2
Cl2—Bi1—Cl591.96 (9)C4—C5—H5A118.2
Cl4—Bi1—Cl385.56 (8)C5—C6—C1116.2 (10)
Cl5—Bi1—Cl3169.84 (8)C5—C6—H6A121.9
Cl5—Bi1—Cl499.63 (8)C1—C6—H6A121.9
H1WA—O1W—H1WB87.0N1—C7—N2107.9 (8)
C2—N1—H1A124.7N1—C7—C8126.9 (9)
C7—N1—C2110.5 (8)N2—C7—C8125.1 (8)
C7—N1—H1A124.7C9—C8—C12116.6 (9)
C1—N2—H2A125.1C9—C8—C7120.1 (9)
C7—N2—C1109.7 (8)C12—C8—C7123.3 (8)
C7—N2—H2A125.1N3—C9—C8119.5 (10)
C9—N3—H3B118.2N3—C9—H9A120.2
C10—N3—C9123.5 (10)C8—C9—H9A120.2
C10—N3—H3B118.2N3—C10—C11120.0 (10)
C6—C1—C2122.0 (9)N3—C10—H10A120.0
C6—C1—N2132.4 (9)C11—C10—H10A120.0
C2—C1—N2105.5 (8)C10—C11—C12119.3 (10)
N1—C2—C1106.2 (9)C10—C11—H11A120.4
N1—C2—C3133.4 (10)C12—C11—H11A120.4
C1—C2—C3120.3 (10)C11—C12—C8121.1 (9)
C4—C3—C2117.2 (10)C11—C12—H12A119.4
C4—C3—H3A121.4C8—C12—H12A119.4
D—H···AD—HH···AD···AD—H···A
N1—H1A···Cl5i0.862.653.267 (8)130
N1—H1A···Cl1ii0.862.663.302 (8)133
N2—H2A···O1Wiii0.861.862.680 (9)159
N3—H3B···Cl4iv0.862.333.104 (9)150
O1W—H1WA···Cl3ii0.852.623.292 (7)137
O1W—H1WB···Cl50.852.773.190 (7)112
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯Cl5i0.862.653.267 (8)130
N1—H1A⋯Cl1ii0.862.663.302 (8)133
N2—H2A⋯O1Wiii0.861.862.680 (9)159
N3—H3B⋯Cl4iv0.862.333.104 (9)150
O1W—H1WA⋯Cl3ii0.852.623.292 (7)137
O1W—H1WB⋯Cl50.852.773.190 (7)112

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Preparation and characterization of novel inorganic-organic hybrid materials containing rare, mixed-halide anions of bismuth(III).

Authors:  Andrea M Goforth; Mark D Smith; Leroy Peterson; Hans-Conrad Zur Loye
Journal:  Inorg Chem       Date:  2004-11-01       Impact factor: 5.165

3.  Antibacterial tests of bismuth(III)-quinolone (ciprofloxacin, cf) compounds against Helicobacter pylori and some other bacteria. Crystal structure of (cfH2)2[Bi2Cl10].4H2O.

Authors:  I Turel; L Golic; P Bukovec; M Gubina
Journal:  J Inorg Biochem       Date:  1998-08       Impact factor: 4.155

  3 in total

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