Literature DB >> 21583307

Diaqua-bis(5-carb-oxy-1H-pyrazole-3-carboxyl-ato-κN,O)cobalt(II) dihydrate.

Hui-Dong Xie, Li Jin, Cheng-Zhi Xie.   

Abstract

In the title complex, [Co(C(5)H(3)N(2)O(4))(2)(H(2)O)(2)]·2H(2)O, the Co(II) ion lies on an inversion center and is coordinated in a distorted octa-hedral environment. In the crystal structure, complex and water mol-ecules are linked into a three-dimensional network by O-H⋯O and N-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21583307      PMCID: PMC2977339          DOI: 10.1107/S1600536809029456

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a mononuclear zinc(II) complex with a pyrazole-3,5-dicarboxyl­ato ligand, see: Xie et al. (2006 ▶) and for a cobalt(III) complex with a 5-carb­oxy-1H-pyrazole-3-carboxyl­ato ligand, see: Xie et al. (2007 ▶). The 3,5-pyrazole­dicarboxylic acid ligand is asymmetric and has six potential coordination sites which can act to link together metal centers through a number of bridging modes, see: King et al. (2004 ▶). A variety of complexes containing this ligand have been reported, see: Frisch & Cahill (2005 ▶); King et al. (2003 ▶, 2004 ▶); Li et al. (2005 ▶); Pan, Ching et al. (2001 ▶); Pan, Frydel et al. (2001 ▶).

Experimental

Crystal data

[Co(C5H3N2O4)2(H2O)2]·2H2O M = 441.18 Monoclinic, a = 10.030 (3) Å b = 12.483 (4) Å c = 6.827 (2) Å β = 108.641 (4)° V = 809.9 (5) Å3 Z = 2 Mo Kα radiation μ = 1.14 mm−1 T = 291 K 0.32 × 0.27 × 0.14 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.713, T max = 0.854 5748 measured reflections 1502 independent reflections 1331 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.142 S = 1.12 1502 reflections 129 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.84 e Å−3 Δρmin = −0.44 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809029456/lh2869sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809029456/lh2869Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C5H3N2O4)2(H2O)2]·2H2OF(000) = 450
Mr = 441.18Dx = 1.809 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2747 reflections
a = 10.030 (3) Åθ = 2.7–27.9°
b = 12.483 (4) ŵ = 1.14 mm1
c = 6.827 (2) ÅT = 291 K
β = 108.641 (4)°Block, orange
V = 809.9 (5) Å30.32 × 0.27 × 0.14 mm
Z = 2
Bruker SMART CCD diffractometer1502 independent reflections
Radiation source: fine-focus sealed tube1331 reflections with I > 2σ(I)
graphiteRint = 0.036
φ and ω scansθmax = 25.5°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −12→12
Tmin = 0.713, Tmax = 0.854k = −15→15
5748 measured reflectionsl = −8→8
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.142H atoms treated by a mixture of independent and constrained refinement
S = 1.12w = 1/[σ2(Fo2) + (0.0775P)2 + 1.4115P] where P = (Fo2 + 2Fc2)/3
1502 reflections(Δ/σ)max < 0.001
129 parametersΔρmax = 0.84 e Å3
0 restraintsΔρmin = −0.44 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.50001.00000.00000.0227 (3)
O10.5183 (3)0.8358 (2)−0.0667 (5)0.0308 (6)
O20.6657 (3)0.6977 (2)−0.0142 (5)0.0337 (7)
O31.1998 (3)0.9569 (3)0.3134 (5)0.0408 (8)
O41.0960 (3)1.1105 (2)0.3529 (5)0.0366 (7)
H41.17721.13240.39770.055*
O50.4797 (3)0.9554 (3)0.2803 (5)0.0378 (7)
H1W0.40310.95940.30200.045*
H2W0.52960.90690.34840.045*
O60.7621 (4)0.2301 (3)0.2670 (8)0.0684 (13)
H3W0.76170.29260.31160.082*
N10.7187 (3)0.9727 (3)0.1137 (5)0.0238 (7)
N20.8371 (3)1.0290 (2)0.1925 (5)0.0237 (7)
H20.84021.09580.22510.028*
C10.6402 (4)0.7957 (3)−0.0049 (6)0.0239 (8)
C20.7586 (4)0.8723 (3)0.0850 (6)0.0232 (7)
C30.9054 (4)0.8646 (3)0.1462 (6)0.0255 (8)
H30.95950.80470.14220.031*
C40.9519 (4)0.9668 (3)0.2143 (6)0.0246 (8)
C51.0964 (4)1.0103 (3)0.2981 (6)0.0264 (8)
H4W0.678 (12)0.232 (9)0.182 (18)0.19 (4)*
U11U22U33U12U13U23
Co10.0135 (4)0.0169 (4)0.0356 (4)0.0024 (2)0.0049 (3)0.0001 (3)
O10.0156 (13)0.0203 (13)0.0522 (17)0.0011 (10)0.0046 (11)−0.0035 (12)
O20.0203 (14)0.0210 (14)0.0535 (18)0.0006 (10)0.0031 (12)−0.0062 (12)
O30.0198 (15)0.0342 (16)0.066 (2)0.0006 (12)0.0106 (14)−0.0041 (15)
O40.0207 (14)0.0269 (15)0.0568 (19)−0.0042 (11)0.0048 (13)−0.0063 (13)
O50.0292 (16)0.0418 (17)0.0443 (16)0.0129 (13)0.0143 (13)0.0130 (14)
O60.041 (2)0.0318 (19)0.124 (4)0.0026 (15)0.014 (2)−0.010 (2)
N10.0136 (15)0.0210 (15)0.0344 (17)0.0010 (12)0.0041 (12)−0.0024 (12)
N20.0159 (15)0.0154 (14)0.0379 (17)−0.0022 (12)0.0059 (13)−0.0025 (13)
C10.0170 (17)0.0197 (18)0.0327 (19)−0.0005 (14)0.0047 (15)−0.0014 (14)
C20.0167 (17)0.0185 (17)0.0329 (19)−0.0012 (14)0.0056 (15)−0.0014 (14)
C30.0171 (17)0.0183 (18)0.039 (2)0.0018 (13)0.0066 (15)−0.0005 (15)
C40.0154 (17)0.0236 (18)0.0336 (19)0.0010 (14)0.0064 (14)0.0008 (15)
C50.0205 (19)0.0238 (19)0.033 (2)−0.0021 (14)0.0065 (16)0.0010 (15)
Co1—O5i2.065 (3)O5—H2W0.8277
Co1—O52.065 (3)O6—H3W0.8380
Co1—N12.108 (3)O6—H4W0.85 (11)
Co1—N1i2.108 (3)N1—N21.336 (4)
Co1—O1i2.120 (3)N1—C21.349 (5)
Co1—O12.120 (3)N2—C41.358 (5)
O1—C11.262 (5)N2—H20.8600
O2—C11.256 (5)C1—C21.495 (5)
O3—C51.209 (5)C2—C31.400 (5)
O4—C51.306 (5)C3—C41.386 (5)
O4—H40.8200C3—H30.9300
O5—H1W0.8288C4—C51.481 (5)
O5i—Co1—O5180N2—N1—C2106.3 (3)
O5i—Co1—N189.16 (12)N2—N1—Co1138.6 (3)
O5—Co1—N190.84 (12)C2—N1—Co1114.8 (2)
O5i—Co1—N1i90.84 (12)N1—N2—C4110.9 (3)
O5—Co1—N1i89.16 (12)N1—N2—H2124.6
N1—Co1—N1i180C4—N2—H2124.6
O5i—Co1—O1i88.82 (12)O2—C1—O1124.1 (3)
O5—Co1—O1i91.18 (12)O2—C1—C2119.7 (3)
N1—Co1—O1i103.22 (11)O1—C1—C2116.2 (3)
N1i—Co1—O1i76.78 (11)N1—C2—C3110.7 (3)
O5i—Co1—O191.18 (12)N1—C2—C1114.8 (3)
O5—Co1—O188.82 (12)C3—C2—C1134.5 (3)
N1—Co1—O176.78 (11)C4—C3—C2104.3 (3)
N1i—Co1—O1103.22 (11)C4—C3—H3127.9
O1i—Co1—O1180C2—C3—H3127.9
C1—O1—Co1116.9 (2)N2—C4—C3107.9 (3)
C5—O4—H4109.5N2—C4—C5121.6 (3)
Co1—O5—H1W121.4C3—C4—C5130.6 (3)
Co1—O5—H2W119.8O3—C5—O4125.8 (4)
H1W—O5—H2W111.9O3—C5—C4122.5 (3)
H3W—O6—H4W95.7O4—C5—C4111.7 (3)
O5i—Co1—O1—C192.3 (3)Co1—N1—C2—C3174.1 (3)
O5—Co1—O1—C1−87.7 (3)N2—N1—C2—C1−179.5 (3)
N1—Co1—O1—C13.4 (3)Co1—N1—C2—C1−5.3 (4)
N1i—Co1—O1—C1−176.6 (3)O2—C1—C2—N1−171.3 (4)
O5i—Co1—N1—N281.6 (4)O1—C1—C2—N18.3 (5)
O5—Co1—N1—N2−98.4 (4)O2—C1—C2—C39.5 (7)
O1i—Co1—N1—N2−6.9 (4)O1—C1—C2—C3−170.8 (4)
O1—Co1—N1—N2173.1 (4)N1—C2—C3—C40.1 (4)
O5i—Co1—N1—C2−90.0 (3)C1—C2—C3—C4179.3 (4)
O5—Co1—N1—C290.0 (3)N1—N2—C4—C3−0.1 (4)
O1i—Co1—N1—C2−178.6 (3)N1—N2—C4—C5179.8 (3)
O1—Co1—N1—C21.4 (3)C2—C3—C4—N20.0 (4)
C2—N1—N2—C40.2 (4)C2—C3—C4—C5−179.9 (4)
Co1—N1—N2—C4−171.9 (3)N2—C4—C5—O3−178.0 (4)
Co1—O1—C1—O2172.5 (3)C3—C4—C5—O31.9 (7)
Co1—O1—C1—C2−7.2 (4)N2—C4—C5—O42.7 (5)
N2—N1—C2—C3−0.2 (4)C3—C4—C5—O4−177.4 (4)
D—H···AD—HH···AD···AD—H···A
O4—H4···O2ii0.821.732.535 (4)169
O5—H1W···O3iii0.832.072.887 (4)171
O5—H2W···O2iv0.831.912.726 (4)171
O6—H4W···O1v0.85 (11)2.06 (11)2.828 (5)149 (10)
O6—H3W···O3vi0.842.302.932 (5)132
N2—H2···O6vii0.861.912.714 (5)155
Co1—O52.065 (3)
Co1—N12.108 (3)
Co1—O12.120 (3)
O1—C11.262 (5)
O2—C11.256 (5)
O5i—Co1—O5180
O5—Co1—N190.84 (12)
O5—Co1—N1i89.16 (12)
N1—Co1—N1i180
O5—Co1—O1i91.18 (12)
N1—Co1—O1i103.22 (11)
O5—Co1—O188.82 (12)
N1—Co1—O176.78 (11)
O1i—Co1—O1180

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4⋯O2ii0.821.732.535 (4)169
O5—H1W⋯O3iii0.832.072.887 (4)171
O5—H2W⋯O2iv0.831.912.726 (4)171
O6—H4W⋯O1v0.85 (11)2.06 (11)2.828 (5)149 (10)
O6—H3W⋯O3vi0.842.302.932 (5)132
N2—H2⋯O6vii0.861.912.714 (5)155

Symmetry codes: (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  The effect of pH on the dimensionality of coordination polymers.

Authors:  L Pan; T Frydel; M B Sander; X Huang; J Li
Journal:  Inorg Chem       Date:  2001-03-12       Impact factor: 5.165

3.  A reversible structural interconversion involving [M(H2pdc)2(H2O)2] . 2H2O (M = Mn, Fe, Co, Ni, Zn, H3pdc = 3,5-pyrazoledicarboxylic acid) and the role of a reactive intermediate [Co(H2pdc)2].

Authors:  L Pan; N Ching; X Huang; J Li
Journal:  Chemistry       Date:  2001-10-15       Impact factor: 5.236

4.  Syntheses, structures and fluorescent properties of two novel coordination polymers in the U-Cu-H3pdc system.

Authors:  Mark Frisch; Christopher L Cahill
Journal:  Dalton Trans       Date:  2005-03-14       Impact factor: 4.390

5.  The building block approach to extended solids: 3,5-pyrazoledicarboxylate coordination compounds of increasing dimensionality.

Authors:  Philippa King; Rodolphe Clérac; Christopher E Anson; Annie K Powell
Journal:  Dalton Trans       Date:  2004-02-24       Impact factor: 4.390

6.  Antiferromagnetic three-dimensional order induced by carboxylate bridges in a two-dimensional network of [Cu3(dcp)2(H2O)4] trimers.

Authors:  Philippa King; Rodolphe Clérac; Christopher E Anson; Claude Coulon; Annie K Powell
Journal:  Inorg Chem       Date:  2003-06-02       Impact factor: 5.165

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.