Literature DB >> 21583297

Two-dimensional dysprosium(III) triiodate(V) dihydrate, Dy(IO(3))(3)(H(2)O)·H(2)O.

Wenxiang Chai, Li Song, Hongsheng Shi, Laishun Qin, Kangying Shu.   

Abstract

During our research into novel nonlinear optical materials using 1,10-phenanthroline as an appending ligand on lanthanide iodates, crystals of an infinite layered Dy(III) iodate compound, Dy(IO(3))(3)(H(2)O)·H(2)O, were obtained under hydro-thermal conditions. The Dy(III) cation has a dicapped trigonal prismatic coordination environment consisting of one water O atom and seven other O atoms from seven iodate anions. These iodate anions bridge the Dy(III) cations into a two-dimensional structure. Through O-H⋯O hydrogen bonds, all of these layers stack along [111], giving a supra-molecular channel, with the solvent water mol-ecules filling the voids.

Entities:  

Year:  2009        PMID: 21583297      PMCID: PMC2977138          DOI: 10.1107/S1600536809027068

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related materials with non-linear optical propertie, see: Rosenzweig & Morosin (1966 ▶); Liminga et al. (1977 ▶); Ok & Halasyamani (2005 ▶). The method of preparation was based on HIO3, which is different to the previous method of obtaining periodates (Douglas et al., 2004 ▶; Assefa et al., 2006 ▶). For noncentrosymmetric inorganic–organic framework structures synthesized from organic ligands, see: Sun et al. (2009 ▶). For related structrues, see: Sun et al. (2009 ▶); Assefa et al. (2006 ▶); Douglas et al. (2004 ▶); Ok & Halasyamani (2005 ▶); Chen et al. (2005 ▶).

Experimental

Crystal data

Dy(IO3)3H2O·H2O M = 723.23 Triclinic, a = 7.15990 (10) Å b = 7.4292 (1) Å c = 10.64430 (10) Å α = 95.161 (12)° β = 104.858 (7)° γ = 110.081 (8)° V = 504.00 (5) Å3 Z = 2 Mo Kα radiation μ = 16.65 mm−1 T = 293 K 0.16 × 0.12 × 0.06 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.136, T max = 0.435 (expected range = 0.115–0.368) 3819 measured reflections 2260 independent reflections 2067 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.109 S = 1.06 2260 reflections 141 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 2.79 e Å−3 Δρmin = −3.20 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) and PLATON (Spek, 2009 ▶; van der Sluis & Spek, 1990 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809027068/br2111sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809027068/br2111Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Dy(IO3)3H2O·H2OZ = 2
Mr = 723.23F(000) = 634
Triclinic, P1Dx = 4.766 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71075 Å
a = 7.1599 (1) ÅCell parameters from 1561 reflections
b = 7.4292 (1) Åθ = 2.0–27.5°
c = 10.6443 (1) ŵ = 16.65 mm1
α = 95.161 (12)°T = 293 K
β = 104.858 (7)°Block, colourless
γ = 110.081 (8)°0.16 × 0.12 × 0.06 mm
V = 504.00 (5) Å3
Rigaku R-AXIS RAPID diffractometer2260 independent reflections
Radiation source: fine-focus sealed tube2067 reflections with I > 2σ(I)
graphiteRint = 0.027
Detector resolution: 14.6306 pixels mm-1θmax = 27.5°, θmin = 3.2°
CCD profile fitting scansh = −9→9
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −7→9
Tmin = 0.136, Tmax = 0.435l = −13→13
3819 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.109w = 1/[σ2(Fo2) + (0.0647P)2 + 5.3292P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
2260 reflectionsΔρmax = 2.79 e Å3
141 parametersΔρmin = −3.20 e Å3
2 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0126 (8)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Dy10.11491 (7)−0.58338 (7)−0.21096 (4)0.01105 (18)
I10.30890 (8)−0.14149 (8)0.07303 (5)0.00659 (18)
I20.28110 (8)−0.63445 (8)0.16834 (5)0.00652 (18)
I30.27848 (9)−0.26870 (9)−0.45631 (6)0.00862 (19)
O10.1496 (11)−0.2711 (12)−0.0929 (7)0.0178 (15)
O20.0966 (11)−0.1450 (11)0.1365 (7)0.0144 (14)
O30.3778 (11)0.1033 (10)0.0380 (7)0.0134 (14)
O40.2940 (11)−0.5350 (11)0.0209 (7)0.0155 (15)
O50.2291 (10)−0.4405 (11)0.2502 (7)0.0131 (14)
O60.5556 (10)−0.5510 (11)0.2555 (7)0.0121 (14)
O70.0908 (11)−0.3710 (11)−0.3699 (7)0.0130 (14)
O80.1065 (11)−0.1986 (11)−0.5813 (7)0.0125 (14)
O90.4335 (11)−0.0352 (12)−0.3515 (8)0.0187 (16)
O100.2235 (12)−0.8611 (12)−0.2319 (8)0.0185 (16)
H10A0.198 (15)−0.928 (9)−0.179 (7)0.028*
H10B0.346 (4)−0.8277 (13)−0.221 (10)0.028*
O110.2419 (13)−0.7837 (13)0.3943 (9)0.0257 (18)
H11A0.225 (3)−0.897 (15)0.3811 (19)0.039*
H11B0.144 (13)−0.7725 (18)0.412 (2)0.039*
U11U22U33U12U13U23
Dy10.0094 (3)0.0136 (3)0.0131 (3)0.00658 (19)0.00455 (18)0.00444 (19)
I10.0048 (3)0.0061 (3)0.0105 (3)0.0031 (2)0.0028 (2)0.0041 (2)
I20.0040 (3)0.0067 (3)0.0111 (3)0.0040 (2)0.0027 (2)0.0039 (2)
I30.0076 (3)0.0109 (3)0.0101 (3)0.0063 (2)0.0032 (2)0.0026 (2)
O10.014 (3)0.023 (4)0.012 (3)0.010 (3)−0.004 (3)−0.002 (3)
O20.011 (3)0.014 (4)0.022 (4)0.006 (3)0.009 (3)0.007 (3)
O30.020 (3)0.006 (3)0.020 (4)0.007 (3)0.011 (3)0.006 (3)
O40.019 (4)0.013 (4)0.014 (3)0.006 (3)0.005 (3)0.006 (3)
O50.006 (3)0.014 (4)0.021 (4)0.005 (3)0.007 (3)0.002 (3)
O60.001 (3)0.016 (4)0.018 (3)0.002 (3)0.003 (3)0.007 (3)
O70.014 (3)0.020 (4)0.013 (3)0.012 (3)0.007 (3)0.013 (3)
O80.014 (3)0.013 (4)0.013 (3)0.005 (3)0.007 (3)0.006 (3)
O90.011 (3)0.018 (4)0.022 (4)0.005 (3)0.000 (3)−0.002 (3)
O100.022 (4)0.023 (4)0.025 (4)0.019 (3)0.013 (3)0.011 (3)
O110.022 (4)0.022 (4)0.034 (5)0.007 (4)0.012 (4)0.005 (4)
Dy1—O42.401 (7)I2—O61.798 (6)
Dy1—O2i2.408 (7)I2—O41.804 (7)
Dy1—O8ii2.412 (7)I2—O51.812 (7)
Dy1—O6iii2.415 (6)I3—O91.783 (8)
Dy1—O72.429 (6)I3—O81.812 (7)
Dy1—O12.438 (8)I3—O71.813 (7)
Dy1—O102.453 (7)O2—Dy1i2.408 (7)
Dy1—O5i2.461 (6)O5—Dy1i2.461 (6)
I1—O11.804 (7)O6—Dy1iii2.415 (6)
I1—O21.809 (7)O8—Dy1ii2.412 (7)
I1—O31.814 (7)
O4—Dy1—O2i75.1 (2)O7—Dy1—O10126.1 (2)
O4—Dy1—O8ii149.7 (2)O1—Dy1—O10151.9 (2)
O2i—Dy1—O8ii78.5 (2)O4—Dy1—O5i112.2 (2)
O4—Dy1—O6iii90.6 (2)O2i—Dy1—O5i73.6 (2)
O2i—Dy1—O6iii142.8 (2)O8ii—Dy1—O5i73.6 (2)
O8ii—Dy1—O6iii101.7 (2)O6iii—Dy1—O5i142.8 (2)
O4—Dy1—O7135.1 (3)O7—Dy1—O5i72.9 (2)
O2i—Dy1—O7141.9 (2)O1—Dy1—O5i69.4 (2)
O8ii—Dy1—O775.1 (2)O10—Dy1—O5i132.9 (3)
O6iii—Dy1—O770.3 (2)O1—I1—O296.8 (3)
O4—Dy1—O169.2 (2)O1—I1—O397.2 (3)
O2i—Dy1—O1111.8 (3)O2—I1—O397.7 (3)
O8ii—Dy1—O1136.0 (2)O6—I2—O499.6 (3)
O6iii—Dy1—O193.9 (3)O6—I2—O597.8 (3)
O7—Dy1—O172.0 (2)O4—I2—O595.5 (3)
O4—Dy1—O1084.5 (3)O9—I3—O899.4 (3)
O2i—Dy1—O1068.8 (3)O9—I3—O7101.4 (3)
O8ii—Dy1—O1072.1 (2)O8—I3—O796.1 (3)
O6iii—Dy1—O1075.9 (3)
D—H···AD—HH···AD···AD—H···A
O10—H10A···O3iv0.802.292.873 (10)131
O10—H10B···O9iv0.802.332.753 (11)114
O11—H11A···O8v0.802.222.954 (11)153
O11—H11B···O7i0.802.262.946 (11)145
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O10—H10A⋯O3i0.802.292.873 (10)131
O10—H10B⋯O9i0.802.332.753 (11)114
O11—H11A⋯O8ii0.802.222.954 (11)153
O11—H11B⋯O7iii0.802.262.946 (11)145

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  New metal iodates: syntheses, structures, and characterizations of noncentrosymmetric La(IO3)3 and NaYI4O12 and Centrosymmetric beta-Cs2I4O11 and Rb2I6O15(OH)2.H2O.

Authors:  Kang Min Ok; P Shiv Halasyamani
Journal:  Inorg Chem       Date:  2005-12-12       Impact factor: 5.165

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Potassium aqua-terbium(III) oxalate sulfate.

Authors:  Ya-Guang Sun; Mei-Yan Guo; Gang Xiong; Bing Jiang; Lei Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-06

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.