Literature DB >> 21583280

(E)-Methyl 2-[(2S,3S,12bR)-3-ethyl-8-meth-oxy-1,2,3,4,6,7,12,12b-octa-hydro-indolo[2,3-a]quinolizin-2-yl]-3-methoxy-acrylate ethanol solvate.

Paulo Carvalho, Edward B Furr Iii, Christopher McCurdy.   

Abstract

In the title compound, C(23)H(30)N(2)O(4)·C(2)H(6)O, the indole derivative has four fused rings, forming an indolo[2-3a]quinolizine system, in which one six-membered ring is directly connected to the indole unit and has a distorted chair conformation. The fourth ring is also a six-membered ring, depicting a regular chair conformation. In the crystal, the mol-ecules are linked by N-H⋯O and O-H⋯N inter-actions, forming a C(7) chain.

Entities:  

Year:  2009        PMID: 21583280      PMCID: PMC2969786          DOI: 10.1107/S1600536809017309

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For previous crystallographic analysis of mitragynine salts (hydro­bromide and hydro­iodide), see: Zacharias et al. (1965 ▶). For the method of extraction, see: Ponglux et al. (1994 ▶). For synthetic studies, see: Ma et al. (2009 ▶). For medicinal properties, see: Boyer et al. (2008 ▶); Weibrecht et al. (2008 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C23H30N2O4·C2H6O M = 444.56 Orthorhombic, a = 7.60450 (10) Å b = 11.7534 (2) Å c = 26.5735 (4) Å V = 2375.11 (6) Å3 Z = 4 Cu Kα radiation μ = 0.70 mm−1 T = 100 K 0.12 × 0.09 × 0.06 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: none 34365 measured reflections 4158 independent reflections 3649 reflections with I > 2σ(I) R int = 0.083

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.089 S = 1.05 4158 reflections 295 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.18 e Å−3 Absolute structure: Flack (1983 ▶), 1758 Friedel pairs Flack parameter: 0.2 (2) Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and ORTEP-3 (Farrugia, 1997 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809017309/bx2206sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809017309/bx2206Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H30N2O4·C2H6OF(000) = 960
Mr = 444.56Dx = 1.243 Mg m3
Orthorhombic, P212121Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 2ac 2abCell parameters from 3152 reflections
a = 7.6045 (1) Åθ = 3.3–64.6°
b = 11.7534 (2) ŵ = 0.70 mm1
c = 26.5735 (4) ÅT = 100 K
V = 2375.11 (6) Å3Needle, colourless
Z = 40.12 × 0.09 × 0.06 mm
Bruker APEXII CCD diffractometer3649 reflections with I > 2σ(I)
Radiation source: Sealed TubeRint = 0.083
graphiteθmax = 66.4°, θmin = 3.3°
φ and ω scansh = −9→9
34365 measured reflectionsk = −13→13
4158 independent reflectionsl = −31→31
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H-atom parameters constrained
wR(F2) = 0.089w = 1/[σ2(Fo2) + (0.0469P)2 + 0.2771P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.001
4158 reflectionsΔρmax = 0.19 e Å3
295 parametersΔρmin = −0.18 e Å3
0 restraintsAbsolute structure: Flack (1983), 1758 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.2 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C30.3530 (3)0.08591 (16)0.79611 (7)0.0226 (4)
H30.29200.01270.79870.027*
C20.3100 (3)0.13687 (16)0.74583 (7)0.0224 (4)
C140.2990 (3)0.15900 (16)0.84110 (7)0.0224 (4)
H14A0.17500.17780.83880.027*
H14B0.36570.22930.84120.027*
C50.6061 (3)0.00338 (18)0.75273 (7)0.0269 (5)
H5A0.5360−0.06470.74790.032*
H5B0.7275−0.01970.75740.032*
C160.2800 (3)0.14709 (17)0.93877 (7)0.0237 (4)
C210.5794 (3)−0.00691 (16)0.84300 (7)0.0245 (4)
H21A0.7032−0.02670.84390.029*
H21B0.5124−0.07690.84050.029*
C200.5303 (3)0.05433 (16)0.89183 (7)0.0228 (4)
H200.5406−0.00140.91910.027*
C70.4161 (3)0.13592 (16)0.70469 (7)0.0234 (4)
C110.0631 (3)0.29780 (17)0.60685 (8)0.0301 (5)
H11−0.02150.33220.58670.036*
C170.2551 (3)0.25695 (16)0.94916 (7)0.0257 (4)
H170.21980.27640.98150.031*
C80.3190 (3)0.19029 (16)0.66512 (7)0.0231 (4)
C100.2287 (3)0.27195 (17)0.58613 (7)0.0281 (5)
H100.25230.29040.55280.034*
C60.5923 (3)0.07864 (19)0.70579 (8)0.0286 (5)
H6A0.68470.13550.70630.034*
H6B0.60700.03250.67580.034*
C150.3348 (3)0.09212 (16)0.88976 (7)0.0226 (4)
H150.26580.02200.88710.027*
C90.3566 (3)0.21944 (17)0.61479 (7)0.0246 (4)
C130.1537 (3)0.21960 (17)0.68469 (7)0.0241 (4)
C120.0231 (3)0.27357 (17)0.65616 (7)0.0281 (4)
H12−0.08560.29210.66990.034*
C190.6535 (3)0.15316 (18)0.90462 (8)0.0268 (4)
H19A0.65270.20680.87690.032*
H19B0.60810.19230.93400.032*
C180.8419 (3)0.1177 (2)0.91491 (9)0.0359 (5)
H18A0.89460.09050.88440.054*
H18B0.84320.05830.93970.054*
H18C0.90710.18190.92720.054*
C240.2472 (3)0.06448 (17)0.98062 (7)0.0245 (4)
C220.5687 (3)0.2261 (2)0.54835 (8)0.0362 (5)
H22A0.55350.30680.54500.054*
H22B0.49410.18750.52470.054*
H22C0.68920.20660.54180.054*
C250.2001 (4)0.0389 (2)1.06740 (8)0.0398 (6)
H25A0.2861−0.02081.06880.060*
H25B0.08560.00651.06230.060*
H25C0.20130.08081.09840.060*
C230.2173 (4)0.45082 (18)0.93323 (9)0.0393 (6)
H23A0.27950.47100.96340.059*
H23B0.09360.44680.94020.059*
H23C0.23840.50730.90790.059*
C270.7975 (3)0.33626 (19)0.79406 (9)0.0404 (6)
H27A0.69480.34920.81490.048*
H27B0.77130.36270.76030.048*
C260.9507 (4)0.4008 (2)0.81476 (12)0.0505 (7)
H26A1.05190.38810.79390.076*
H26B0.97500.37520.84840.076*
H26C0.92350.48060.81530.076*
N20.5446 (2)0.06406 (13)0.79818 (6)0.0223 (4)
N10.1505 (2)0.18655 (14)0.73471 (6)0.0237 (4)
H10.06420.19550.75520.028*
O50.83716 (18)0.21863 (12)0.79292 (5)0.0297 (3)
H50.74620.18180.79600.045*
O30.2266 (2)−0.03588 (11)0.97486 (5)0.0323 (3)
O20.2782 (2)0.34155 (11)0.91554 (5)0.0303 (3)
O10.52291 (19)0.19211 (12)0.59849 (5)0.0310 (3)
O40.2410 (2)0.11472 (11)1.02612 (5)0.0343 (4)
U11U22U33U12U13U23
C30.0226 (10)0.0251 (10)0.0201 (9)0.0001 (8)0.0008 (9)0.0000 (8)
C20.0197 (10)0.0247 (10)0.0226 (9)−0.0004 (8)−0.0025 (8)−0.0016 (8)
C140.0200 (10)0.0273 (10)0.0200 (9)0.0005 (8)−0.0001 (8)−0.0007 (8)
C50.0234 (11)0.0319 (11)0.0253 (10)0.0065 (9)−0.0002 (8)−0.0038 (8)
C160.0182 (10)0.0317 (10)0.0213 (9)−0.0008 (8)0.0002 (8)−0.0010 (8)
C210.0229 (10)0.0281 (10)0.0226 (10)0.0029 (8)−0.0003 (8)0.0007 (8)
C200.0224 (11)0.0282 (10)0.0177 (9)0.0038 (8)−0.0005 (8)0.0026 (8)
C70.0236 (10)0.0263 (10)0.0204 (9)−0.0017 (8)−0.0004 (8)−0.0023 (8)
C110.0329 (12)0.0302 (11)0.0273 (10)−0.0005 (9)−0.0086 (9)0.0016 (9)
C170.0236 (11)0.0309 (11)0.0227 (10)−0.0034 (9)0.0005 (9)0.0013 (8)
C80.0258 (11)0.0237 (9)0.0197 (9)−0.0041 (8)−0.0009 (8)−0.0026 (7)
C100.0363 (12)0.0287 (10)0.0193 (9)−0.0048 (10)−0.0024 (9)0.0007 (8)
C60.0255 (11)0.0397 (12)0.0207 (10)0.0034 (9)0.0019 (9)−0.0028 (9)
C150.0209 (10)0.0257 (10)0.0213 (10)−0.0012 (8)0.0009 (8)−0.0010 (8)
C90.0272 (11)0.0255 (10)0.0212 (9)−0.0043 (8)0.0018 (9)−0.0041 (8)
C130.0262 (11)0.0243 (9)0.0218 (9)−0.0031 (8)−0.0015 (8)−0.0015 (8)
C120.0260 (11)0.0293 (11)0.0291 (10)−0.0008 (9)−0.0026 (9)0.0009 (9)
C190.0235 (11)0.0340 (11)0.0229 (10)0.0016 (9)−0.0020 (9)−0.0024 (8)
C180.0241 (12)0.0469 (14)0.0366 (12)0.0017 (10)−0.0020 (10)−0.0038 (10)
C240.0181 (10)0.0314 (11)0.0240 (10)0.0005 (9)0.0029 (9)−0.0051 (8)
C220.0450 (14)0.0369 (12)0.0265 (11)−0.0045 (11)0.0109 (10)0.0016 (9)
C250.0561 (17)0.0359 (12)0.0275 (11)−0.0033 (11)0.0084 (11)0.0037 (9)
C230.0493 (15)0.0280 (11)0.0406 (13)0.0020 (11)0.0050 (11)0.0023 (9)
C270.0389 (14)0.0370 (12)0.0452 (13)0.0090 (10)0.0105 (12)0.0091 (10)
C260.0404 (15)0.0308 (13)0.0804 (19)0.0015 (11)0.0045 (14)−0.0067 (13)
N20.0185 (8)0.0288 (9)0.0196 (8)0.0024 (7)−0.0006 (7)−0.0012 (7)
N10.0217 (9)0.0294 (8)0.0201 (8)0.0026 (7)0.0026 (7)0.0002 (7)
O50.0237 (7)0.0330 (7)0.0326 (8)0.0005 (6)0.0038 (7)0.0013 (6)
O30.0413 (9)0.0279 (8)0.0276 (7)−0.0012 (7)0.0041 (7)0.0005 (6)
O20.0394 (9)0.0246 (7)0.0269 (7)0.0017 (7)0.0045 (6)−0.0020 (5)
O10.0348 (9)0.0368 (8)0.0215 (7)−0.0023 (7)0.0047 (6)0.0005 (6)
O40.0527 (10)0.0285 (7)0.0216 (7)−0.0041 (7)0.0050 (7)0.0012 (6)
C3—N21.481 (3)C6—H6B0.9700
C3—C21.500 (3)C15—H150.9800
C3—C141.528 (2)C9—O11.375 (2)
C3—H30.9800C13—N11.385 (2)
C2—C71.359 (3)C13—C121.401 (3)
C2—N11.378 (3)C12—H120.9300
C14—C151.538 (2)C19—C181.517 (3)
C14—H14A0.9700C19—H19A0.9700
C14—H14B0.9700C19—H19B0.9700
C5—N21.479 (2)C18—H18A0.9600
C5—C61.533 (3)C18—H18B0.9600
C5—H5A0.9700C18—H18C0.9600
C5—H5B0.9700C24—O31.200 (2)
C16—C171.334 (3)C24—O41.346 (2)
C16—C241.497 (3)C22—O11.434 (2)
C16—C151.512 (3)C22—H22A0.9600
C21—N21.478 (2)C22—H22B0.9600
C21—C201.530 (3)C22—H22C0.9600
C21—H21A0.9700C25—O41.447 (2)
C21—H21B0.9700C25—H25A0.9600
C20—C191.530 (3)C25—H25B0.9600
C20—C151.553 (3)C25—H25C0.9600
C20—H200.9800C23—O21.444 (3)
C7—C81.435 (3)C23—H23A0.9600
C7—C61.500 (3)C23—H23B0.9600
C11—C121.375 (3)C23—H23C0.9600
C11—C101.408 (3)C27—O51.415 (3)
C11—H110.9300C27—C261.495 (4)
C17—O21.348 (2)C27—H27A0.9700
C17—H170.9300C27—H27B0.9700
C8—C131.403 (3)C26—H26A0.9600
C8—C91.410 (3)C26—H26B0.9600
C10—C91.381 (3)C26—H26C0.9600
C10—H100.9300N1—H10.8600
C6—H6A0.9700O5—H50.8200
N2—C3—C2108.46 (15)O1—C9—C8115.38 (17)
N2—C3—C14109.44 (16)C10—C9—C8119.27 (18)
C2—C3—C14114.45 (16)N1—C13—C12129.34 (18)
N2—C3—H3108.1N1—C13—C8107.59 (17)
C2—C3—H3108.1C12—C13—C8123.07 (18)
C14—C3—H3108.1C11—C12—C13116.90 (19)
C7—C2—N1110.71 (16)C11—C12—H12121.5
C7—C2—C3125.74 (18)C13—C12—H12121.5
N1—C2—C3123.47 (17)C18—C19—C20114.17 (18)
C3—C14—C15108.83 (15)C18—C19—H19A108.7
C3—C14—H14A109.9C20—C19—H19A108.7
C15—C14—H14A109.9C18—C19—H19B108.7
C3—C14—H14B109.9C20—C19—H19B108.7
C15—C14—H14B109.9H19A—C19—H19B107.6
H14A—C14—H14B108.3C19—C18—H18A109.5
N2—C5—C6111.38 (16)C19—C18—H18B109.5
N2—C5—H5A109.4H18A—C18—H18B109.5
C6—C5—H5A109.4C19—C18—H18C109.5
N2—C5—H5B109.4H18A—C18—H18C109.5
C6—C5—H5B109.4H18B—C18—H18C109.5
H5A—C5—H5B108.0O3—C24—O4122.76 (18)
C17—C16—C24116.77 (17)O3—C24—C16124.37 (17)
C17—C16—C15129.11 (18)O4—C24—C16112.86 (16)
C24—C16—C15114.11 (16)O1—C22—H22A109.5
N2—C21—C20111.97 (15)O1—C22—H22B109.5
N2—C21—H21A109.2H22A—C22—H22B109.5
C20—C21—H21A109.2O1—C22—H22C109.5
N2—C21—H21B109.2H22A—C22—H22C109.5
C20—C21—H21B109.2H22B—C22—H22C109.5
H21A—C21—H21B107.9O4—C25—H25A109.5
C21—C20—C19113.32 (17)O4—C25—H25B109.5
C21—C20—C15109.77 (16)H25A—C25—H25B109.5
C19—C20—C15112.13 (16)O4—C25—H25C109.5
C21—C20—H20107.1H25A—C25—H25C109.5
C19—C20—H20107.1H25B—C25—H25C109.5
C15—C20—H20107.1O2—C23—H23A109.5
C2—C7—C8106.27 (17)O2—C23—H23B109.5
C2—C7—C6121.23 (18)H23A—C23—H23B109.5
C8—C7—C6132.39 (18)O2—C23—H23C109.5
C12—C11—C10121.73 (19)H23A—C23—H23C109.5
C12—C11—H11119.1H23B—C23—H23C109.5
C10—C11—H11119.1O5—C27—C26109.7 (2)
C16—C17—O2123.94 (18)O5—C27—H27A109.7
C16—C17—H17118.0C26—C27—H27A109.7
O2—C17—H17118.0O5—C27—H27B109.7
C13—C8—C9118.26 (18)C26—C27—H27B109.7
C13—C8—C7107.40 (16)H27A—C27—H27B108.2
C9—C8—C7134.32 (19)C27—C26—H26A109.5
C9—C10—C11120.73 (18)C27—C26—H26B109.5
C9—C10—H10119.6H26A—C26—H26B109.5
C11—C10—H10119.6C27—C26—H26C109.5
C7—C6—C5109.66 (16)H26A—C26—H26C109.5
C7—C6—H6A109.7H26B—C26—H26C109.5
C5—C6—H6A109.7C21—N2—C5109.23 (14)
C7—C6—H6B109.7C21—N2—C3107.72 (15)
C5—C6—H6B109.7C5—N2—C3111.39 (15)
H6A—C6—H6B108.2C2—N1—C13108.02 (16)
C16—C15—C14117.18 (16)C2—N1—H1126.0
C16—C15—C20110.83 (16)C13—N1—H1126.0
C14—C15—C20110.24 (15)C27—O5—H5109.5
C16—C15—H15105.9C17—O2—C23113.49 (15)
C14—C15—H15105.9C9—O1—C22116.81 (16)
C20—C15—H15105.9C24—O4—C25114.73 (16)
O1—C9—C10125.35 (17)
D—H···AD—HH···AD···AD—H···A
O5—H5···N20.822.072.876 (2)169
N1—H1···O5i0.862.012.866 (2)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H5⋯N20.822.072.876 (2)169
N1—H1⋯O5i0.862.012.866 (2)170

Symmetry code: (i) .

  4 in total

1.  A New Indole Alkaloid, 7 alpha-Hydroxy-7H-mitragynine, from Mitragyna speciosa in Thailand.

Authors:  D Ponglux; S Wongseripipatana; H Takayama; M Kikuchi; M Kurihara; M Kitajima; N Aimi; S Sakai
Journal:  Planta Med       Date:  1994-12       Impact factor: 3.352

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  General approach to the total synthesis of 9-methoxy-substituted indole alkaloids: synthesis of mitragynine, as well as 9-methoxygeissoschizol and 9-methoxy-N(b)-methylgeissoschizol.

Authors:  Jun Ma; Wenyuan Yin; Hao Zhou; Xuebin Liao; James M Cook
Journal:  J Org Chem       Date:  2009-01-02       Impact factor: 4.354

4.  Self-treatment of opioid withdrawal using kratom (Mitragynia speciosa korth).

Authors:  Edward W Boyer; Kavita M Babu; Jessica E Adkins; Christopher R McCurdy; John H Halpern
Journal:  Addiction       Date:  2008-06       Impact factor: 6.526

  4 in total
  1 in total

1.  Computational Study on the Conformations of Mitragynine and Mitragynaline.

Authors:  Haining Liu; Christopher R McCurdy; Robert J Doerksen
Journal:  Theochem       Date:  2010-04-15
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.