Literature DB >> 21583277

6-(1-Adamant-yl)-3-(2-fluoro-phen-yl)-1,2,4-triazolo[3,4-b][1,3,4]thia-diazole.

Mahmood-Ul-Hassan Khan, Shahid Hameed, M Nawaz Tahir, Tanveer Hussain Bokhari, Islam Ullah Khan.   

Abstract

In the title compound, C(19)H(19)FN(4)S, the planes of the 2-fluoro-phenyl and 1,2,4-triazolo[3,4-b][1,3,4]thia-diazole ring systems are oriented at a dihedral angle of 48.98 (6)°. In the crystal, weak C-H⋯S and C-H⋯π inter-actions may help to establish the packing and π-π inter-actions between the centroids of the benzene rings at a distance of 3.8792 (13) Å occur.

Entities:  

Year:  2009        PMID: 21583277      PMCID: PMC2969597          DOI: 10.1107/S1600536809019692

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Holm et al. (2008 ▶). For our previous studies on related compounds, see: Akhtar et al. (2007 ▶, 2008a ▶,b ▶). For background to the biological activity of related compounds, see: El-Emam et al. (2004 ▶); Kadi et al. (2007 ▶); Zhang et al. (2002 ▶).

Experimental

Crystal data

C19H19FN4S M = 354.44 Orthorhombic, a = 13.2684 (9) Å b = 12.4293 (9) Å c = 20.2231 (15) Å V = 3335.1 (4) Å3 Z = 8 Mo Kα radiation μ = 0.21 mm−1 T = 296 K 0.25 × 0.22 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.945, T max = 0.956 22695 measured reflections 4486 independent reflections 3116 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.136 S = 1.04 4486 reflections 235 parameters H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809019692/hb2984sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809019692/hb2984Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H19FN4SF(000) = 1488
Mr = 354.44Dx = 1.412 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 3116 reflections
a = 13.2684 (9) Åθ = 2.5–29.1°
b = 12.4293 (9) ŵ = 0.21 mm1
c = 20.2231 (15) ÅT = 296 K
V = 3335.1 (4) Å3Prism, colourless
Z = 80.25 × 0.22 × 0.20 mm
Bruker Kappa APEXII CCD diffractometer4486 independent reflections
Radiation source: fine-focus sealed tube3116 reflections with I > 2σ(I)
graphiteRint = 0.031
Detector resolution: 7.40 pixels mm-1θmax = 29.1°, θmin = 2.5°
ω scansh = −12→18
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −17→14
Tmin = 0.945, Tmax = 0.956l = −26→27
22695 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.136H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0579P)2 + 1.3259P] where P = (Fo2 + 2Fc2)/3
4486 reflections(Δ/σ)max < 0.001
235 parametersΔρmax = 0.35 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.25232 (4)−0.15058 (4)0.23126 (2)0.0517 (2)
F10.35571 (14)−0.27396 (11)0.52074 (7)0.0839 (6)
N10.20243 (13)−0.22822 (13)0.41446 (9)0.0543 (6)
N20.17459 (14)−0.24778 (14)0.34844 (9)0.0591 (6)
N30.29443 (10)−0.12526 (11)0.35182 (7)0.0360 (4)
N40.36117 (10)−0.05549 (11)0.32199 (7)0.0343 (4)
C10.32252 (13)−0.10525 (14)0.47314 (9)0.0392 (5)
C20.36251 (16)−0.16551 (17)0.52410 (10)0.0517 (6)
C30.41073 (19)−0.1200 (2)0.57717 (10)0.0639 (8)
C40.41784 (17)−0.0094 (2)0.58048 (10)0.0611 (8)
C50.37749 (16)0.05301 (18)0.53119 (10)0.0549 (7)
C60.33120 (14)0.00584 (15)0.47758 (9)0.0463 (6)
C70.27374 (13)−0.15494 (14)0.41576 (9)0.0403 (5)
C80.23167 (13)−0.18403 (14)0.31343 (10)0.0437 (5)
C90.34740 (12)−0.06062 (13)0.25887 (8)0.0348 (5)
C100.40431 (12)0.00535 (13)0.20943 (8)0.0337 (4)
C110.48759 (15)0.07039 (18)0.24376 (9)0.0504 (6)
C120.54359 (15)0.13979 (18)0.19241 (10)0.0543 (7)
C130.47109 (16)0.21626 (17)0.15982 (11)0.0581 (7)
C140.38813 (17)0.15387 (18)0.12638 (12)0.0626 (8)
C150.33138 (15)0.08502 (16)0.17677 (11)0.0527 (6)
C160.4512 (2)−0.06639 (17)0.15637 (11)0.0657 (8)
C170.5082 (3)0.0039 (2)0.10590 (12)0.0802 (9)
C180.59042 (18)0.0674 (2)0.14102 (13)0.0730 (9)
C190.4329 (3)0.0822 (2)0.07399 (11)0.0855 (10)
H30.43812−0.162930.610280.0767*
H40.450040.022860.616190.0733*
H50.381430.127570.534000.0658*
H60.305450.048880.443970.0555*
H11A0.458180.116290.277420.0604*
H11B0.534680.021850.265120.0604*
H120.596730.180970.214600.0651*
H13A0.442450.264090.192730.0697*
H13B0.506520.259660.127440.0697*
H140.340990.204330.105640.0751*
H15A0.301450.130910.210220.0633*
H15B0.277640.045950.154830.0633*
H16A0.49735−0.117050.176700.0789*
H16B0.39877−0.106920.134050.0789*
H170.53836−0.041910.071760.0963*
H18A0.627420.110320.109150.0876*
H18B0.637340.018260.162030.0876*
H19A0.379720.042080.052160.1027*
H19B0.466940.125700.041030.1027*
U11U22U33U12U13U23
S10.0578 (3)0.0481 (3)0.0492 (3)−0.0163 (2)−0.0141 (2)−0.0060 (2)
F10.1293 (14)0.0492 (8)0.0733 (9)0.0040 (8)−0.0198 (9)0.0189 (7)
N10.0552 (10)0.0455 (9)0.0623 (11)−0.0141 (8)−0.0018 (8)0.0070 (8)
N20.0611 (10)0.0483 (9)0.0678 (12)−0.0202 (8)−0.0068 (9)0.0020 (9)
N30.0342 (7)0.0312 (7)0.0427 (8)−0.0025 (5)−0.0031 (6)−0.0002 (6)
N40.0330 (7)0.0324 (7)0.0375 (7)−0.0016 (5)−0.0019 (6)−0.0014 (6)
C10.0351 (8)0.0425 (9)0.0401 (9)−0.0011 (7)0.0052 (7)0.0042 (7)
C20.0615 (12)0.0487 (11)0.0450 (10)0.0004 (9)0.0043 (9)0.0110 (9)
C30.0733 (15)0.0777 (16)0.0407 (10)0.0016 (12)−0.0069 (10)0.0148 (10)
C40.0616 (13)0.0810 (16)0.0406 (10)−0.0128 (12)0.0007 (9)−0.0047 (10)
C50.0585 (12)0.0528 (12)0.0533 (12)−0.0067 (10)0.0026 (10)−0.0077 (9)
C60.0470 (10)0.0432 (10)0.0487 (10)−0.0015 (8)−0.0022 (8)0.0024 (8)
C70.0390 (9)0.0342 (8)0.0478 (10)−0.0005 (7)0.0006 (7)0.0048 (7)
C80.0425 (9)0.0356 (9)0.0530 (10)−0.0064 (7)−0.0083 (8)−0.0036 (8)
C90.0338 (8)0.0313 (7)0.0394 (9)0.0013 (6)−0.0055 (7)−0.0054 (7)
C100.0355 (8)0.0340 (8)0.0315 (7)0.0043 (6)−0.0038 (6)−0.0048 (6)
C110.0423 (10)0.0682 (13)0.0406 (9)−0.0147 (9)−0.0045 (8)0.0014 (9)
C120.0401 (10)0.0728 (14)0.0499 (11)−0.0137 (9)−0.0001 (8)0.0052 (10)
C130.0550 (12)0.0478 (11)0.0716 (14)−0.0041 (9)0.0134 (11)0.0044 (10)
C140.0527 (12)0.0602 (13)0.0748 (15)0.0024 (10)−0.0127 (11)0.0291 (12)
C150.0402 (10)0.0453 (10)0.0727 (13)0.0009 (8)−0.0095 (9)0.0140 (10)
C160.0922 (18)0.0451 (11)0.0599 (13)0.0105 (11)0.0243 (12)−0.0122 (10)
C170.123 (2)0.0619 (15)0.0558 (13)0.0071 (15)0.0433 (15)−0.0135 (12)
C180.0537 (13)0.0819 (17)0.0834 (17)0.0217 (12)0.0285 (12)0.0241 (14)
C190.114 (2)0.105 (2)0.0374 (11)−0.0375 (19)−0.0114 (13)0.0115 (13)
S1—C81.735 (2)C14—C151.529 (3)
S1—C91.7758 (17)C14—C191.506 (4)
F1—C21.353 (3)C16—C171.542 (4)
N1—N21.407 (3)C17—C181.522 (4)
N1—C71.314 (2)C17—C191.537 (5)
N2—C81.305 (3)C3—H30.9300
N3—N41.3784 (19)C4—H40.9300
N3—C71.372 (2)C5—H50.9300
N3—C81.353 (2)C6—H60.9300
N4—C91.291 (2)C11—H11A0.9700
C1—C21.380 (3)C11—H11B0.9700
C1—C61.389 (3)C12—H120.9800
C1—C71.465 (3)C13—H13A0.9700
C2—C31.372 (3)C13—H13B0.9700
C3—C41.380 (4)C14—H140.9800
C4—C51.372 (3)C15—H15A0.9700
C5—C61.377 (3)C15—H15B0.9700
C9—C101.497 (2)C16—H16A0.9700
C10—C111.535 (3)C16—H16B0.9700
C10—C151.534 (3)C17—H170.9800
C10—C161.528 (3)C18—H18A0.9700
C11—C121.541 (3)C18—H18B0.9700
C12—C131.504 (3)C19—H19A0.9700
C12—C181.509 (3)C19—H19B0.9700
C13—C141.507 (3)
C8—S1—C987.82 (8)C2—C3—H3121.00
N2—N1—C7109.15 (16)C4—C3—H3121.00
N1—N2—C8104.93 (16)C3—C4—H4120.00
N4—N3—C7135.23 (14)C5—C4—H4120.00
N4—N3—C8118.95 (14)C4—C5—H5120.00
C7—N3—C8105.81 (14)C6—C5—H5120.00
N3—N4—C9108.10 (13)C1—C6—H6120.00
C2—C1—C6117.36 (17)C5—C6—H6120.00
C2—C1—C7122.17 (17)C10—C11—H11A110.00
C6—C1—C7120.47 (16)C10—C11—H11B110.00
F1—C2—C1118.53 (18)C12—C11—H11A110.00
F1—C2—C3118.78 (19)C12—C11—H11B110.00
C1—C2—C3122.7 (2)H11A—C11—H11B108.00
C2—C3—C4118.7 (2)C11—C12—H12109.00
C3—C4—C5120.1 (2)C13—C12—H12109.00
C4—C5—C6120.4 (2)C18—C12—H12109.00
C1—C6—C5120.75 (18)C12—C13—H13A110.00
N1—C7—N3108.16 (16)C12—C13—H13B110.00
N1—C7—C1128.78 (17)C14—C13—H13A110.00
N3—C7—C1122.99 (15)C14—C13—H13B110.00
S1—C8—N2139.20 (16)H13A—C13—H13B108.00
S1—C8—N3108.85 (13)C13—C14—H14109.00
N2—C8—N3111.95 (18)C15—C14—H14109.00
S1—C9—N4116.26 (12)C19—C14—H14109.00
S1—C9—C10119.54 (12)C10—C15—H15A110.00
N4—C9—C10124.18 (15)C10—C15—H15B110.00
C9—C10—C11110.45 (14)C14—C15—H15A110.00
C9—C10—C15108.84 (14)C14—C15—H15B110.00
C9—C10—C16110.78 (14)H15A—C15—H15B108.00
C11—C10—C15107.99 (15)C10—C16—H16A110.00
C11—C10—C16109.38 (16)C10—C16—H16B110.00
C15—C10—C16109.35 (15)C17—C16—H16A110.00
C10—C11—C12109.70 (15)C17—C16—H16B110.00
C11—C12—C13109.91 (17)H16A—C16—H16B108.00
C11—C12—C18109.21 (18)C16—C17—H17110.00
C13—C12—C18109.78 (18)C18—C17—H17110.00
C12—C13—C14109.79 (18)C19—C17—H17110.00
C13—C14—C15110.41 (19)C12—C18—H18A110.00
C13—C14—C19109.4 (2)C12—C18—H18B110.00
C15—C14—C19109.39 (19)C17—C18—H18A110.00
C10—C15—C14109.73 (16)C17—C18—H18B110.00
C10—C16—C17109.51 (17)H18A—C18—H18B108.00
C16—C17—C18109.7 (2)C14—C19—H19A110.00
C16—C17—C19108.5 (3)C14—C19—H19B110.00
C18—C17—C19109.5 (2)C17—C19—H19A110.00
C12—C18—C17109.6 (2)C17—C19—H19B110.00
C14—C19—C17109.61 (19)H19A—C19—H19B108.00
C9—S1—C8—N2−179.0 (2)C4—C5—C6—C11.5 (3)
C9—S1—C8—N31.05 (13)S1—C9—C10—C11−175.71 (12)
C8—S1—C9—N4−0.64 (14)S1—C9—C10—C1565.90 (17)
C8—S1—C9—C10−179.31 (14)S1—C9—C10—C16−54.36 (19)
C7—N1—N2—C8−0.1 (2)N4—C9—C10—C115.7 (2)
N2—N1—C7—N3−0.2 (2)N4—C9—C10—C15−112.66 (18)
N2—N1—C7—C1176.70 (17)N4—C9—C10—C16127.08 (18)
N1—N2—C8—S1−179.67 (17)C9—C10—C11—C12−178.63 (15)
N1—N2—C8—N30.3 (2)C15—C10—C11—C12−59.7 (2)
C7—N3—N4—C9179.60 (18)C16—C10—C11—C1259.2 (2)
C8—N3—N4—C90.9 (2)C9—C10—C15—C14179.60 (16)
N4—N3—C7—N1−178.48 (16)C11—C10—C15—C1459.7 (2)
N4—N3—C7—C14.4 (3)C16—C10—C15—C14−59.3 (2)
C8—N3—C7—N10.33 (19)C9—C10—C16—C17179.4 (2)
C8—N3—C7—C1−176.77 (16)C11—C10—C16—C17−58.6 (2)
N4—N3—C8—S1−1.38 (18)C15—C10—C16—C1759.5 (2)
N4—N3—C8—N2178.67 (15)C10—C11—C12—C1360.2 (2)
C7—N3—C8—S1179.58 (12)C10—C11—C12—C18−60.3 (2)
C7—N3—C8—N2−0.4 (2)C11—C12—C13—C14−59.2 (2)
N3—N4—C9—S10.02 (17)C18—C12—C13—C1461.0 (2)
N3—N4—C9—C10178.62 (14)C11—C12—C18—C1761.0 (2)
C6—C1—C2—F1−179.52 (18)C13—C12—C18—C17−59.6 (2)
C6—C1—C2—C3−1.0 (3)C12—C13—C14—C1559.4 (2)
C7—C1—C2—F1−0.3 (3)C12—C13—C14—C19−61.0 (2)
C7—C1—C2—C3178.2 (2)C13—C14—C15—C10−60.1 (2)
C2—C1—C6—C5−0.4 (3)C19—C14—C15—C1060.3 (2)
C7—C1—C6—C5−179.61 (18)C13—C14—C19—C1759.7 (3)
C2—C1—C7—N150.7 (3)C15—C14—C19—C17−61.4 (3)
C2—C1—C7—N3−132.83 (19)C10—C16—C17—C1859.5 (3)
C6—C1—C7—N1−130.1 (2)C10—C16—C17—C19−60.1 (2)
C6—C1—C7—N346.3 (3)C16—C17—C18—C12−60.8 (3)
F1—C2—C3—C4179.9 (2)C19—C17—C18—C1258.2 (3)
C1—C2—C3—C41.3 (3)C16—C17—C19—C1461.2 (3)
C2—C3—C4—C5−0.3 (3)C18—C17—C19—C14−58.5 (3)
C3—C4—C5—C6−1.1 (3)
D—H···AD—HH···AD···AD—H···A
C15—H15A···S1i0.972.843.640 (2)140
C12—H12···Cg1ii0.982.903.713 (2)140
C18—H18B···Cg1iii0.972.833.787 (3)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C15—H15A⋯S1i0.972.843.640 (2)140
C12—H12⋯Cg1ii0.982.903.713 (2)140
C18—H18BCg1iii0.972.833.787 (3)170

Symmetry codes: (i) ; (ii) ; (iii) . Cg1 is the centroid of the S1/C8/N3/N4/C9 ring.

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, antimicrobial, and anti-inflammatory activities of novel 2-(1-adamantyl)-5-substituted-1,3,4-oxadiazoles and 2-(1-adamantylamino)-5-substituted-1,3,4-thiadiazoles.

Authors:  Adnan A Kadi; Nasser R El-Brollosy; Omar A Al-Deeb; Elsayed E Habib; Tarek M Ibrahim; Ali A El-Emam
Journal:  Eur J Med Chem       Date:  2006-11-28       Impact factor: 6.514

3.  Syntheses, urease inhibition, and antimicrobial studies of some chiral 3-substituted-4-amino-5-thioxo-1H,4H-1,2,4-triazoles.

Authors:  Tashfeen Akhtar; Shahid Hameed; Khalid Mohammed Khan; Muhammad Iqbal Choudhary
Journal:  Med Chem       Date:  2008-11       Impact factor: 2.745

4.  3-(2-Fluoro-phen-yl)-6-(phenoxy-meth-yl)-1,2,4-triazolo[3,4-b][1,3,4]thia-diazole.

Authors:  Melanie Holm; Dieter Schollmeyer; Stefan Laufer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-03-12

5.  Synthesis, antimicrobial, and anti-HIV-1 activity of certain 5-(1-adamantyl)-2-substituted thio-1,3,4-oxadiazoles and 5-(1-adamantyl)-3-substituted aminomethyl-1,3,4-oxadiazoline-2-thiones.

Authors:  Ali A El-Emam; Omar A Al-Deeb; Mohamed Al-Omar; Jochen Lehmann
Journal:  Bioorg Med Chem       Date:  2004-10-01       Impact factor: 3.641

6.  In vitro antitumor and antiviral activities of new benzothiazole and 1,3,4-oxadiazole-2-thione derivatives.

Authors:  Tashfeen Akhtar; Shahid Hameed; Najim A Al-Masoudi; Roberta Loddo; Paolo La Colla
Journal:  Acta Pharm       Date:  2008-06       Impact factor: 2.230

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total
  5 in total

1.  3-(1-Adamant-yl)-1-{[4-(2-meth-oxy-phen-yl)piperazin-1-yl]meth-yl}-4-methyl-1H-1,2,4-triazole-5(4H)-thione.

Authors:  Abdul-Malek S Al-Tamimi; Ahmed Bari; Mohamed A Al-Omar; Khalid A Alrashood; Ali A El-Emam
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-23

2.  6-(1-Adamant-yl)-3-(2-chloro-phen-yl)-1,2,4-triazolo[3,4-b][1,3,4]thia-diazole.

Authors:  M Nawaz Tahir; Mahmood-Ul-Hassan Khan; Shahid Hammed; Tanveer Hussain Bokhari; Saira Hina
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-31

3.  6-(Adamantan-1-yl)-3-(3-fluoro-phen-yl)-1,2,4-triazolo[3,4-b][1,3,4]thia-diazole.

Authors:  Mahmood-Ul-Hassan Khan; Shahid Hameed; Tashfeen Akhtar; Helen Stoeckli-Evans
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-17

4.  3-Methyl-6-trichloro-methyl-1,2,4-triazolo[3,4-b][1,3,4]thia-diazole.

Authors:  Wei-Min Jia; Zhi-Jian Wang; Xiao-Yu Jia; Jing-Jing Zhang; Wei Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-13

5.  Structural and Energetic Properties of Weak Noncovalent Interactions in Two Closely Related 3,6-Disubstituted-[1,2,4]triazolo[3,4-b][1,3,4]thiadiazole Derivatives: In Vitro Cyclooxygenase Activity, Crystallography, and Computational Investigations.

Authors:  Lamya H Al-Wahaibi; Sekar Karthikeyan; Olivier Blacque; Amal A El-Masry; Hanan M Hassan; M Judith Percino; Ali A El-Emam; Subbiah Thamotharan
Journal:  ACS Omega       Date:  2022-09-16
  5 in total

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